Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001065

Physical Location & Seq

Genomic Coordinates Forward (+)

23324893 .. 23334686

Gene Structure 9794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00349880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3804 bp

ATGTGGGAAATTGAACAAGAAAAAGAAGTGGAAGACCATAAACACCAAATGGAAATGCGTCTTGAACATCTCAAGAAATTACAGCTGGAAGCAGCAAGTAAGTTAAAGAAGAAGGAGGACACATGGGTAGAAGAATTGAAAAGATGGGCTCATGATGAATTCTTGTATAGGCCATCTTTAGATGCACCTGAGTCTGCACTCGGCATGATCGGGGGAGTGATGGAATTGTCTAAAACAGCTGATTATGTTACCGATAAAGCTGTAGCATGCAGTCGTCCCATTACAGCAACAACTCCAGCTTGGTCCATTAGCGCCAATTCTGCATTAGACACAATGACTTCTGAGGCTGGTTTATTTACTGATGTTATGGGGAAGAACAATTCTGGAAAGTCTTGTCATGATCAAGAGAATTTTGTATCTGTAAACTCTGGTGCCAAAAACTTTATTACTATTGGAGGCACTTCTGTCAATGCGGAGGTTCTGCTGGATGTTACTGAAATCTGCTCTACTGCTGCTCTAACTGAAGCTATAACCTCCAGTCTTCCTTCATTTGATGAATGCCTTCACAATACAAATCCATTACCCATTTCTGATGCAGTGGTCAGACTAGAAGTGGCTGAAACTGTCAATTCAGTTGATGGTCCACAGCGACCCCGTCTTTTGAATCTGACATCTCTAGAACAGAATCCTAATGGTGCCGCAGTAAGTGTTCCTGACAGTGAGGCTCCAGTGGGATTGCATGAGACCATCAGTACAGGTCATGATTTGTGTAATGTTGCGTCCGAGATCCCACCTTCATGTGAGGAACGAGCTCATGTAATCAGTCCAGTGACTATGCAAGATAAAGAGGCCGAAATGGGAGTGCATTGCATGTTAGATGATGACCTAGAGAATCTTGTTGCAATGGATTTACCTTCATCTGAAGAACAGATCTCCAAAAGTGCCACAGAAAAGGAGAACAGTCAAGTGCATGAGACTATCAGTTCAAGTCATGATTTGCATAATGTTGTATCCGTGATCCCACCTTCATCTGAAGGACGAAATCTTATGATGAGCATAGCAACTGTGCAAGATAAAGAGGCTGAAGCTGGAGTGCTTGATAAAGAGTCCAATGACTATGCAAGTTTGGGTGAGGACCAAGGGAATCTTGTCAATGTGCATTCATCTTCATCTGAAGAAAAAATCGCTGAAAGCACCTCAGGGAAACTGAATGGTGAAGCACAGATTTTGGCTTCTGATAGTGCAACTCAGGTCAATCAGCAGAACTTAGTTGATTCTGCAGTCAATGAAAACTCTAATCAGGAAATGCCCCTGGACAGTTCGGTACAGCCTCTGATAGCCTTGGTTCTTGGTGGTTCACTGACAGCACATCAGGCAGACCAAGACCATGGTACTGATATGTTAGCCACATCAAGTGCAGCACAAGATGGAGATGCACAAGCTTGCGTAAATCAGAATACTTGTCAACCTATGGACTCCCATTTCCATGATGGAATTGAATTTCAGCCAAGTAGTGAAGACTCTGACTTTAATCAAGTTACCCATGTTGCAATGCAATTTAATGCGAACCTCCCTGCTTTTTCAGAACAAACTGGTTTGCAACCTCTGACAAGTTTTTCCTTGAATCAGCCATCTTATGTACCTCCTAATGGCTTTGGTCTACCTTTCTCAGACACAAGATCTACATTTGTTGCATCGAATTTGCCTCTTCCTTTCAACTGTGATTTGCTTCAAAATGAATTGGAAAGATTGGGAAGAGAAAGAGAAGAAAACCTCAAGTCTCATGAAAATAAAAAGCTGCAATTGAAATCTGATATGGAGAAGGGGATAGAGGAATTGAAAGCTGAAATTTGTCGAGAGTATGAGACCGAACTCCAACAGATAGAGGCAGAATTTTTCCTTAAAAAGGAAGATTTGCATGCAGTTCACAAAAAAGTATCAATCCATATGATTTTGGCTCAGGCATGGGATCTGGCTTTCAAGTCCATTGGCAAGGATAATACAGGTTCAAGTTCATCTGGAGTGCATCATGATGGGAATTTTGCTGTTGACCGCCAACTGGTTCAGTCATGTATGCAGCAAAATGCACAAATGCCTTCTCTAGTTTCCAATTCATCTTTGGCCAACCCTCCTGCAGCTTGCGGACAGACAACCCCACTTGCACTGGCAACCAATCCACACTATGCAACTCCACTGATACACAATGTTGACCTTTTGCCTACTCCTTCTCCTGGCCTTTCTTCGACCAATGCAGCAAGTCACCCCCACATCGGTTCCTTCTCCTCTTCAACAGGAAGACCCCAAGGTAGAGTTGAGATTCGTTCGCCTCTCCCACATCTTCAACCTCGTAGACCTTCAACACCCTTTACTGGAGGTACCAGTCCTTTCTCTCATGAAGATGGGTCATCAAATCAGCAGTCACATAGAAGCTCACCTTCATTGTCTTTCCTGGAACTTTTTCTCACACAAACCCCGGCACCCACACAGATGTCTGTTCCCTATAATATGGTACATGATCATGAAACTGCAGGGGGACCTTCAATATCCGTTACTGGTACCAGTCCTGTCTATCCACAATGTGAAGTTATATCAAATCAGCAGCCACATAGGAATTTCAATCCACCTCCATCACTTTCATCTCATACGCAACAACCTTTGGCCTCCACACAACAATTTGATCTTTTGCCTACTTCTCTTCCTGGCCTTTCTTCAACCAATGCAGCAAGTCACCCCCACATCGGTTCCTTCTCCTCTTCGACAGGAAGACCCCAAGGTAGAGTTGAGATTCTTTCGCCTCCCCCACATCTTCAACCTCGTAGACCTTCAACACTCTTGACTGGAGGTACCGGTCCTTTCTCTCATAAAGATGGGTCATTGAATCAGCAGTCACATAGAAGCTCACCTTCGTCGTCTCGCCTGGAACTTTTTCTCACACAGCCCCTGGCGCCCACACAGATGTCTGTTCCCAATAATATGGAACATGATCATGAAACTGCTGGGCAACCTTCAATATCCGTTACTGGTACCGGTCTTGTCTATCCACATTGTGAAGTTATATCAAATCAGCAGCGACATAGGAATTCCCCTCCATCTCCTCCCTTGCTTTCATCTCATACTCAACGACATTTGGCCTCCACACGACAATTTGATCTTTTGCCTATTCCTTATCCTGGCCTTTCTTCGACCAATGCAGCAAGTCACCCCCACATCGGTTCCTTCTCCTCTTCAACAGGAAGACCCCAAGGTAGAGTAGAGATTCGTGCCCCTCTCCCACATCTTCAACCTCGTAGACTTTCAACACCTTTTACTGGAGGTACCAGTCCTTTCTCTCATGAAGATGGGTCATCAAATCAGCAGTCACATAGAAACTCACTTTCATCATCTCTCCTGGAACTTTTTCTCACACAGCCCCCAGCGCCCACACGGATGTCTGTTCCCTATAATATGGAACATGATCATGAAACTGCAGAGGAACCTTCAATATCCGTTACCAGTTGTGTCTATCAACAATGTGGGGTTATATCAAATCAGCAGCCAGATAGGAATTCCCCTCCAGCTCCTCCATCACTTTCTCCTCATACTCAACGACCCTTGGTCGCCACACAACAATTTGTTCCTGATAATATAGTCCATCACCGTGAAAGTGCCGGAGGATTGCCAGCTCTTCGTAGTGCATCTGCATTGGAGTTGCTTATCGACATGAGCAATCAATCTTCAGGTAGTTGGCGTTCAACACAGAATAGTTCAAGACTTGAACCGTCTGGTGGATCCACAGATGTAGTTTGTTTATCAGATGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006342 GO:0006344 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

1267

Amino Acids

136.93

Weight (kDa)

5.16

Isoelectric Point (pI)

58.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08060 AT1G08060 AT1G08060
fragaria_vesca	FvH4_3g31740 FvH4_3g31740 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540
malus_domestica	MD03G1121600.v1.1 MD11G1139900.v1.1 MD11G1140000.v1.1
prunus_persica	Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104700_v2.0.a1
pyrus_communis	pycom11g11560 pycom11g11580
rosa_chinensis	RchiOBHm_Chr4g0405411 RchiOBHm_Chr5g0058411
rosa_laevigata	RLG00000008844 RLG00000035218
rosa_multiflora	Rmu_sc0000367.1_g000115 Rmu_sc0000575.1_g000013
rosa_roxburghii	Rroxscaffold_1G00022120 Rroxscaffold_1G00022140 Rroxscaffold_5G00349880
rosa_rugosa	Rorug04G0059700 Rorug04G0059800 Rorug04G0059900 Rorug04G0060000 Rorug05G0313800 Rorug05G0313800 Rorug05G0313900 Rorug05G0314000 Rorug05G0314100
rosa_samantha	Rh4AG131700 Rh4BG126600 Rh4CG139100 Rh4DG125700 Rh5AG381300 Rh5BG392800 Rh5CG416900 Rh5DG408000
rosa_wichuraiana	Rw4G010660 Rw5G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	5 cut(s)	2375, 2555, 2843, 3023, 3314
AccB1I	GGYRCC	9 cut(s)	431, 695, 2375, 2476, 2555, 2843, 2944, 3023, 3314
AccI	GTMKAC	4 cut(s)	1660, 2350, 2818, 3289
AciI	CCGC	4 cut(s)	473, 699, 2053, 2142
AclWI	GGATC	5 cut(s)	781, 1012, 1977, 3762, 3775
AcoI	YGGCCR	1 cut(s)	2121
AcuI	CTGAAG	6 cut(s)	543, 942, 1053, 1104, 1194, 3699
AcyI	GRCGYC	1 cut(s)	2945
AdeI	CACNNNGTG	2 cut(s)	2579, 3047
AgeI	ACCGGT	2 cut(s)	2846, 3026
AhdI	GACNNNNNGTC	1 cut(s)	3593
AjnI	CCWGG	8 cut(s)	1311, 2230, 2448, 2698, 2916, 2940, 3169, 3387
Alw21I	GWGCWC	1 cut(s)	814
Alw26I	GTCTC	5 cut(s)	737, 968, 1785, 1859, 2916
AlwI	GGATC	5 cut(s)	781, 1012, 1977, 3762, 3775
AlwNI	CAGNNNCTG	2 cut(s)	1333, 2941
AoxI	GGCC	8 cut(s)	170, 849, 2121, 2233, 2658, 2701, 3129, 3172
ArsI	GACNNNNNNTTYG	4 cut(s)	2402, 2434, 3341, 3373
AsiGI	ACCGGT	2 cut(s)	2846, 3026
Asp700I	GAANNNNTTC	4 cut(s)	561, 2457, 2925, 3396
Asp718I	GGTACC	5 cut(s)	2375, 2555, 2843, 3023, 3314
AspLEI	GCGC	3 cut(s)	314, 2947, 3418
AspS9I	GGNCC	5 cut(s)	303, 641, 1135, 2534, 2849
AsuC2I	CCSGG	1 cut(s)	2474
AsuHPI	GGTGA	8 cut(s)	1142, 1226, 2252, 2424, 2720, 2892, 3191, 3626
AvaII	GGWCC	5 cut(s)	303, 641, 1135, 2534, 2849
AxyI	CCTNAGG	1 cut(s)	1198
BaeGI	GKGCMC	1 cut(s)	3265
BalI	TGGCCA	1 cut(s)	2123
BamHI	GGATCC	1 cut(s)	3767
BanI	GGYRCC	9 cut(s)	431, 695, 2375, 2476, 2555, 2843, 2944, 3023, 3314
BanII	GRGCYC	2 cut(s)	151, 814
BbsI	GAAGAC	6 cut(s)	39, 533, 1524, 2302, 2770, 3241
Bbv12I	GWGCWC	1 cut(s)	814
BciT130I	CCWGG	8 cut(s)	1313, 2232, 2450, 2700, 2918, 2942, 3171, 3389
BciVI	GTATCC	1 cut(s)	1021
BclI	TGATCA	4 cut(s)	400, 2515, 2983, 3454
BcnI	CCSGG	1 cut(s)	2474
BcoDI	GTCTC	5 cut(s)	737, 968, 1785, 1859, 2916
BfaI	CTAG	4 cut(s)	608, 677, 887, 2102
BfmI	CTRYAG	5 cut(s)	261, 1278, 2133, 2526, 3465
BfoI	RGCGCY	3 cut(s)	315, 2948, 3419
BfuI	GTATCC	1 cut(s)	1021
BglII	AGATCT	2 cut(s)	930, 1679
Bme1390I	CCNGG	9 cut(s)	1313, 2232, 2450, 2474, 2700, 2918, 2942, 3171, 3389
Bme18I	GGWCC	5 cut(s)	303, 641, 1135, 2534, 2849
BmeRI	GACNNNNNGTC	1 cut(s)	3593
BmgT120I	GGNCC	5 cut(s)	303, 641, 1135, 2534, 2849
BmrFI	CCNGG	9 cut(s)	1313, 2232, 2450, 2474, 2700, 2918, 2942, 3171, 3389
BmsI	GCATC	6 cut(s)	172, 583, 1423, 1703, 2035, 3683
BpiI	GAAGAC	6 cut(s)	39, 533, 1524, 2302, 2770, 3241
BpmI	CTGGAG	9 cut(s)	279, 520, 711, 1110, 2040, 2391, 2859, 3330, 3537
Bpu10I	CCTNAGC	1 cut(s)	1959
BpuEI	CTTGAG	2 cut(s)	56, 1760
BpuMI	CCSGG	1 cut(s)	2474
BsaHI	GRCGYC	1 cut(s)	2945
BsaI	GGTCTC	2 cut(s)	737, 1859
BsaWI	WCCGGW	2 cut(s)	2846, 3026
BsaXI	ACNNNNNCTCC	2 cut(s)	2212, 2242
Bse118I	RCCGGY	2 cut(s)	2846, 3026
Bse21I	CCTNAGG	1 cut(s)	1198
Bse3DI	GCAATG	3 cut(s)	865, 909, 1557
BseBI	CCWGG	8 cut(s)	1313, 2232, 2450, 2700, 2918, 2942, 3171, 3389
BseGI	GGATG	2 cut(s)	493, 3432
BseMI	GCAATG	3 cut(s)	865, 909, 1557
BseMII	CTCAG	6 cut(s)	180, 333, 1212, 1262, 1683, 1973
BseRI	GAGGAG	6 cut(s)	2272, 2740, 3084, 3211, 3549, 3564
BseSI	GKGCMC	1 cut(s)	3265
BseYI	CCCAGC	2 cut(s)	2996, 3412
BsgI	GTGCAG	2 cut(s)	180, 1437
BshFI	GGCC	8 cut(s)	172, 851, 2123, 2235, 2660, 2703, 3131, 3174
BshNI	GGYRCC	9 cut(s)	431, 695, 2375, 2476, 2555, 2843, 2944, 3023, 3314
BshTI	ACCGGT	2 cut(s)	2846, 3026
BsiHKAI	GWGCWC	1 cut(s)	814
BsiSI	CCGG	4 cut(s)	2474, 2847, 3027, 3648
BslFI	GGGAC	2 cut(s)	261, 2547
BsmAI	GTCTC	5 cut(s)	737, 968, 1785, 1859, 2916
BsmBI	CGTCTC	1 cut(s)	2916
BsmFI	GGGAC	2 cut(s)	261, 2547
BsmI	GAATGC	2 cut(s)	563, 1159
BsnI	GGCC	8 cut(s)	172, 851, 2123, 2235, 2660, 2703, 3131, 3174
Bso31I	GGTCTC	2 cut(s)	737, 1859
Bsp1286I	GDGCHC	3 cut(s)	151, 814, 3265
Bsp19I	CCATGG	1 cut(s)	1387
BspACI	CCGC	4 cut(s)	473, 699, 2053, 2142
BspANI	GGCC	8 cut(s)	172, 851, 2123, 2235, 2660, 2703, 3131, 3174
BspCNI	CTCAG	6 cut(s)	181, 334, 1211, 1261, 1682, 1972
BspMAI	CTGCAG	4 cut(s)	1282, 2137, 2530, 3469
BspPI	GGATC	5 cut(s)	781, 1012, 1977, 3762, 3775
BspQI	GCTCTTC	1 cut(s)	3669
BspT107I	GGYRCC	9 cut(s)	431, 695, 2375, 2476, 2555, 2843, 2944, 3023, 3314
BspTNI	GGTCTC	2 cut(s)	737, 1859
BsrDI	GCAATG	3 cut(s)	865, 909, 1557
BsrFI	RCCGGY	2 cut(s)	2846, 3026
BssAI	RCCGGY	2 cut(s)	2846, 3026
BssNI	GRCGYC	1 cut(s)	2945
BssT1I	CCWWGG	7 cut(s)	1138, 1341, 1387, 2302, 2770, 3241, 3591
Bst2UI	CCWGG	8 cut(s)	1313, 2232, 2450, 2700, 2918, 2942, 3171, 3389
Bst4CI	ACNGT	8 cut(s)	625, 719, 962, 1066, 1319, 1721, 3638, 3759
Bst6I	CTCTTC	7 cut(s)	1713, 1750, 2290, 2700, 2758, 3229, 3669
BstACI	GRCGYC	1 cut(s)	2945
BstC8I	GCNNGC	5 cut(s)	268, 1444, 1920, 2140, 3660
BstDEI	CTNAG	7 cut(s)	189, 342, 1198, 1248, 1267, 1669, 1959
BstDSI	CCRYGG	1 cut(s)	1387
BstENI	CCTNNNNNAGG	1 cut(s)	1904
BstF5I	GGATG	2 cut(s)	493, 3432
BstH2I	RGCGCY	3 cut(s)	315, 2948, 3419
BstHHI	GCGC	3 cut(s)	314, 2947, 3418
BstMAI	GTCTC	5 cut(s)	737, 968, 1785, 1859, 2916
BstMWI	GCNNNNNNNGC	4 cut(s)	320, 1373, 2944, 3415
BstNI	CCWGG	8 cut(s)	1313, 2232, 2450, 2700, 2918, 2942, 3171, 3389
BstNSI	RCATGY	3 cut(s)	270, 874, 1922
BstSCI	CCNGG	9 cut(s)	1311, 2230, 2448, 2472, 2698, 2916, 2940, 3169, 3387
BstSFI	CTRYAG	5 cut(s)	261, 1278, 2133, 2526, 3465
BstSLI	GKGCMC	1 cut(s)	3265
BstV2I	GAAGAC	6 cut(s)	39, 533, 1524, 2302, 2770, 3241
BstX2I	RGATCY	5 cut(s)	786, 930, 1679, 1969, 3767
BstXI	CCANNNNNNTGG	2 cut(s)	1388, 2974
BstYI	RGATCY	5 cut(s)	786, 930, 1679, 1969, 3767
Bsu36I	CCTNAGG	1 cut(s)	1198
BsuI	GTATCC	1 cut(s)	1021
BsuRI	GGCC	8 cut(s)	172, 851, 2123, 2235, 2660, 2703, 3131, 3174
BtgI	CCRYGG	1 cut(s)	1387
BtsCI	GGATG	2 cut(s)	493, 3432
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	7 cut(s)	603, 724, 735, 834, 1358, 2162, 2192
Cac8I	GCNNGC	5 cut(s)	268, 1444, 1920, 2140, 3660
CaiI	CAGNNNCTG	2 cut(s)	1333, 2941
CfoI	GCGC	3 cut(s)	314, 2947, 3418
Cfr10I	RCCGGY	2 cut(s)	2846, 3026
Cfr13I	GGNCC	5 cut(s)	303, 641, 1135, 2534, 2849
CseI	GACGC	2 cut(s)	47, 768
CspAI	ACCGGT	2 cut(s)	2846, 3026
DdeI	CTNAG	7 cut(s)	189, 342, 1198, 1248, 1267, 1669, 1959
DinI	GGCGCC	1 cut(s)	2946
DraIII	CACNNNGTG	2 cut(s)	2579, 3047
DriI	GACNNNNNGTC	1 cut(s)	3593
EaeI	YGGCCR	1 cut(s)	2121
Eam1104I	CTCTTC	7 cut(s)	1713, 1750, 2290, 2700, 2758, 3229, 3669
Eam1105I	GACNNNNNGTC	1 cut(s)	3593
EarI	CTCTTC	7 cut(s)	1713, 1750, 2290, 2700, 2758, 3229, 3669
Ecl136II	GAGCTC	1 cut(s)	812
Eco130I	CCWWGG	7 cut(s)	1138, 1341, 1387, 2302, 2770, 3241, 3591
Eco24I	GRGCYC	2 cut(s)	151, 814
Eco31I	GGTCTC	2 cut(s)	737, 1859
Eco47I	GGWCC	5 cut(s)	303, 641, 1135, 2534, 2849
Eco53kI	GAGCTC	1 cut(s)	812
Eco57I	CTGAAG	6 cut(s)	543, 942, 1053, 1104, 1194, 3699
Eco81I	CCTNAGG	1 cut(s)	1198
EcoICRI	GAGCTC	1 cut(s)	812
EcoNI	CCTNNNNNAGG	1 cut(s)	1904
EcoO109I	RGGNCCY	1 cut(s)	2534
EcoRI	GAATTC	3 cut(s)	158, 3079, 3544
EcoRII	CCWGG	8 cut(s)	1311, 2230, 2448, 2698, 2916, 2940, 3169, 3387
EcoT14I	CCWWGG	7 cut(s)	1138, 1341, 1387, 2302, 2770, 3241, 3591
EcoT38I	GRGCYC	2 cut(s)	151, 814
EgeI	GGCGCC	1 cut(s)	2946
EheI	GGCGCC	1 cut(s)	2946
ErhI	CCWWGG	7 cut(s)	1138, 1341, 1387, 2302, 2770, 3241, 3591
Esp3I	CGTCTC	1 cut(s)	2916
FalI	AAGNNNNNCTT	6 cut(s)	1131, 1163, 2419, 2451, 2887, 2919
FaqI	GGGAC	2 cut(s)	261, 2547
FauNDI	CATATG	1 cut(s)	1947
FbaI	TGATCA	4 cut(s)	400, 2515, 2983, 3454
FblI	GTMKAC	4 cut(s)	1660, 2350, 2818, 3289
FokI	GGATG	2 cut(s)	500, 3439
FriOI	GRGCYC	2 cut(s)	151, 814
FspBI	CTAG	4 cut(s)	608, 677, 887, 2102
GlaI	GCGC	3 cut(s)	313, 2946, 3417
GsaI	CCCAGC	2 cut(s)	3000, 3416
GsuI	CTGGAG	9 cut(s)	279, 520, 711, 1110, 2040, 2391, 2859, 3330, 3537
HaeII	RGCGCY	3 cut(s)	315, 2948, 3419
HaeIII	GGCC	8 cut(s)	172, 851, 2123, 2235, 2660, 2703, 3131, 3174
HapII	CCGG	4 cut(s)	2474, 2847, 3027, 3648
HgaI	GACGC	2 cut(s)	47, 768
HhaI	GCGC	3 cut(s)	314, 2947, 3418
Hin1I	GRCGYC	1 cut(s)	2945
Hin6I	GCGC	3 cut(s)	312, 2945, 3416
HinP1I	GCGC	3 cut(s)	312, 2945, 3416
HincII	GTYRAC	3 cut(s)	1466, 2050, 2209
HindII	GTYRAC	3 cut(s)	1466, 2050, 2209
HindIII	AAGCTT	1 cut(s)	1440
HpaII	CCGG	4 cut(s)	2474, 2847, 3027, 3648
HphI	GGTGA	8 cut(s)	1142, 1226, 2252, 2424, 2720, 2892, 3191, 3626
Hpy99I	CGWCG	1 cut(s)	2911
HpyCH4III	ACNGT	8 cut(s)	625, 719, 962, 1066, 1319, 1721, 3638, 3759
HpyF10VI	GCNNNNNNNGC	4 cut(s)	320, 1373, 2944, 3415
HpyF3I	CTNAG	7 cut(s)	189, 342, 1198, 1248, 1267, 1669, 1959
Hsp92I	GRCGYC	1 cut(s)	2945
HspAI	GCGC	3 cut(s)	312, 2945, 3416
KasI	GGCGCC	1 cut(s)	2944
KpnI	GGTACC	5 cut(s)	2379, 2559, 2847, 3027, 3318
Ksp22I	TGATCA	4 cut(s)	400, 2515, 2983, 3454
LguI	GCTCTTC	1 cut(s)	3669
LmnI	GCTCC	2 cut(s)	730, 3562
LweI	GCATC	6 cut(s)	172, 583, 1423, 1703, 2035, 3683
MaeI	CTAG	4 cut(s)	608, 677, 887, 2102
MfeI	CAATTG	1 cut(s)	1802
MflI	RGATCY	5 cut(s)	786, 930, 1679, 1969, 3767
MhlI	GDGCHC	3 cut(s)	151, 814, 3265
MlsI	TGGCCA	1 cut(s)	2123
MluNI	TGGCCA	1 cut(s)	2123
Mly113I	GGCGCC	1 cut(s)	2945
MlyI	GAGTC	4 cut(s)	200, 1115, 1469, 1514
MmeI	TCCRAC	1 cut(s)	1900
Mox20I	TGGCCA	1 cut(s)	2123
MroXI	GAANNNNTTC	4 cut(s)	561, 2457, 2925, 3396
MscI	TGGCCA	1 cut(s)	2123
MseI	TTAA	4 cut(s)	104, 1530, 1560, 1902
Msp20I	TGGCCA	1 cut(s)	2123
MspA1I	CMGCKG	2 cut(s)	85, 239
MspI	CCGG	4 cut(s)	2474, 2847, 3027, 3648
MspR9I	CCNGG	9 cut(s)	1313, 2232, 2450, 2474, 2700, 2918, 2942, 3171, 3389
MunI	CAATTG	1 cut(s)	1802
Mva1269I	GAATGC	2 cut(s)	563, 1159
MvaI	CCWGG	8 cut(s)	1313, 2232, 2450, 2700, 2918, 2942, 3171, 3389
MwoI	GCNNNNNNNGC	4 cut(s)	320, 1373, 2944, 3415
NarI	GGCGCC	1 cut(s)	2945
NciI	CCSGG	1 cut(s)	2474
NcoI	CCATGG	1 cut(s)	1387
NdeI	CATATG	1 cut(s)	1947
NmeAIII	GCCGAG	1 cut(s)	180
NmuCI	GTSAC	7 cut(s)	829, 2258, 2418, 2726, 2886, 3197, 3357
NspI	RCATGY	3 cut(s)	270, 874, 1922
PaeI	GCATGC	2 cut(s)	270, 1922
PciSI	GCTCTTC	1 cut(s)	3669
PctI	GAATGC	2 cut(s)	563, 1159
PdmI	GAANNNNTTC	4 cut(s)	561, 2457, 2925, 3396
PflFI	GACNNNGTC	1 cut(s)	654
PfoI	TCCNGGA	2 cut(s)	2448, 3387
PinAI	ACCGGT	2 cut(s)	2846, 3026
PleI	GAGTC	4 cut(s)	199, 1114, 1469, 1514
PluTI	GGCGCC	1 cut(s)	2948
PpsI	GAGTC	4 cut(s)	199, 1114, 1469, 1514
PpuMI	RGGWCCY	1 cut(s)	2534
Psp124BI	GAGCTC	1 cut(s)	814
Psp5II	RGGWCCY	1 cut(s)	2534
Psp6I	CCWGG	8 cut(s)	1311, 2230, 2448, 2698, 2916, 2940, 3169, 3387
PspFI	CCCAGC	2 cut(s)	2996, 3412
PspGI	CCWGG	8 cut(s)	1311, 2230, 2448, 2698, 2916, 2940, 3169, 3387
PspPI	GGNCC	5 cut(s)	303, 641, 1135, 2534, 2849
PspPPI	RGGWCCY	1 cut(s)	2534
PsrI	GAACNNNNNNTAC	2 cut(s)	3712, 3744
PstI	CTGCAG	4 cut(s)	1282, 2137, 2530, 3469
PstNI	CAGNNNCTG	2 cut(s)	1333, 2941
PsuI	RGATCY	5 cut(s)	786, 930, 1679, 1969, 3767
PsyI	GACNNNGTC	1 cut(s)	654
PvuII	CAGCTG	2 cut(s)	85, 239
SacI	GAGCTC	1 cut(s)	814
SapI	GCTCTTC	1 cut(s)	3669
SaqAI	TTAA	4 cut(s)	104, 1530, 1560, 1902
Sau96I	GGNCC	5 cut(s)	303, 641, 1135, 2534, 2849
SchI	GAGTC	4 cut(s)	200, 1115, 1469, 1514
ScrFI	CCNGG	9 cut(s)	1313, 2232, 2450, 2474, 2700, 2918, 2942, 3171, 3389
SduI	GDGCHC	3 cut(s)	151, 814, 3265
SfaNI	GCATC	6 cut(s)	172, 583, 1423, 1703, 2035, 3683
SfcI	CTRYAG	5 cut(s)	261, 1278, 2133, 2526, 3465
SfoI	GGCGCC	1 cut(s)	2946
SinI	GGWCC	5 cut(s)	303, 641, 1135, 2534, 2849
SmlI	CTYRAG	2 cut(s)	71, 1775
SmoI	CTYRAG	2 cut(s)	71, 1775
SphI	GCATGC	2 cut(s)	270, 1922
SsiI	CCGC	4 cut(s)	473, 699, 2053, 2142
SspDI	GGCGCC	1 cut(s)	2944
SspMI	CTAG	4 cut(s)	608, 677, 887, 2102
SstI	GAGCTC	1 cut(s)	814
StyD4I	CCNGG	9 cut(s)	1311, 2230, 2448, 2472, 2698, 2916, 2940, 3169, 3387
StyI	CCWWGG	7 cut(s)	1138, 1341, 1387, 2302, 2770, 3241, 3591
TaaI	ACNGT	8 cut(s)	625, 719, 962, 1066, 1319, 1721, 3638, 3759
TaqI	TCGA	6 cut(s)	1697, 1855, 2243, 2756, 3182, 3696
TaqII	GACCGA	1 cut(s)	1883
TatI	WGTACW	1 cut(s)	752
TauI	GCSGC	1 cut(s)	701
Tru1I	TTAA	4 cut(s)	104, 1530, 1560, 1902
Tru9I	TTAA	4 cut(s)	104, 1530, 1560, 1902
TscAI	CASTG	7 cut(s)	603, 724, 735, 834, 1365, 2169, 2199
TseFI	GTSAC	7 cut(s)	829, 2258, 2418, 2726, 2886, 3197, 3357
Tsp45I	GTSAC	7 cut(s)	829, 2258, 2418, 2726, 2886, 3197, 3357
TspGWI	ACGGA	5 cut(s)	1003, 2536, 3004, 3439, 3475
TspRI	CASTG	7 cut(s)	603, 724, 735, 834, 1365, 2169, 2199
Tth111I	GACNNNGTC	1 cut(s)	654
VpaK11BI	GGWCC	5 cut(s)	303, 641, 1135, 2534, 2849
XagI	CCTNNNNNAGG	1 cut(s)	1904
XbaI	TCTAGA	1 cut(s)	676
XceI	RCATGY	3 cut(s)	270, 874, 1922
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1487, 2116
XmiI	GTMKAC	4 cut(s)	1660, 2350, 2818, 3289
XmnI	GAANNNNTTC	4 cut(s)	561, 2457, 2925, 3396
XspI	CTAG	4 cut(s)	608, 677, 887, 2102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.