Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001065

Physical Location & Seq

Genomic Coordinates Reverse (-)

9330102 .. 9332777

Gene Structure 2676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0059700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCACAGTCGACATCAGAAACTCGTACACTGTTCCTCACAGCGAGAACTCCGAGCAGGGGTTTCTGGGTTATTGGCTTAACCTTGAGGTGGAGGTGTGTGAGAGCTGCTGAGGTTTCATATGCTACTGTTGTAAGAAATTGGTTTGCAAGGTCTGAAGAGAAGGAGAAGGTTGAATCTATTAGGACAAGGATGATTGAGATGGTATCTCAAGGCTCGGCTACCTTGGAGGTTTCACTTAAACACTCGGGGTCACTTTTTATGTACGCTGGTAATGAGGGTGGTGCTTATGCCAAAAACAGCTTTGGTAATATATATACAGCTGTTGGTGTATTTGTTCTTGGACGGATGTTACGTGAAGCATGGGGATCTGAAGCAGCAAAAAGCAACCAGAGTTCAATGATTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006342 GO:0006344 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

Chromo Helicase_C SNF2_N

Protein Analysis

136

Amino Acids

15.1

Weight (kDa)

9.91

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08060 AT1G08060 AT1G08060
fragaria_vesca	FvH4_3g31740 FvH4_3g31740 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540
malus_domestica	MD03G1121600.v1.1 MD11G1139900.v1.1 MD11G1140000.v1.1
prunus_persica	Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104700_v2.0.a1
pyrus_communis	pycom11g11560 pycom11g11580
rosa_chinensis	RchiOBHm_Chr4g0405411 RchiOBHm_Chr5g0058411
rosa_laevigata	RLG00000008844 RLG00000035218
rosa_multiflora	Rmu_sc0000367.1_g000115 Rmu_sc0000575.1_g000013
rosa_roxburghii	Rroxscaffold_1G00022120 Rroxscaffold_1G00022140 Rroxscaffold_5G00349880
rosa_rugosa	Rorug04G0059700 Rorug04G0059800 Rorug04G0059900 Rorug04G0060000 Rorug05G0313800 Rorug05G0313800 Rorug05G0313900 Rorug05G0314000 Rorug05G0314100
rosa_samantha	Rh4AG131700 Rh4BG126600 Rh4CG139100 Rh4DG125700 Rh5AG381300 Rh5BG392800 Rh5CG416900 Rh5DG408000
rosa_wichuraiana	Rw4G010660 Rw5G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	376
AcuI	CTGAAG	2 cut(s)	177, 393
AfaI	GTAC	2 cut(s)	28, 266
AfiI	CCNNNNNNNGG	2 cut(s)	59, 90
AgsI	TTSAA	2 cut(s)	176, 399
AluBI	AGCT	3 cut(s)	107, 303, 323
AluI	AGCT	3 cut(s)	107, 303, 323
AlwI	GGATC	1 cut(s)	376
Ama87I	CYCGRG	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	107, 377
AvaI	CYCGRG	1 cut(s)	247
BbvCI	CCTCAGC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	94, 389
BccI	CCATC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	409
BisI	GCNGC	2 cut(s)	108, 378
BlsI	GCNGC	2 cut(s)	109, 379
BmeT110I	CYCGRG	1 cut(s)	247
Bpu10I	CCTNAGC	1 cut(s)	111
BpuEI	CTTGAG	2 cut(s)	106, 195
BsaAI	YACGTR	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 90
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	198, 354
BseLI	CCNNNNNNNGG	2 cut(s)	59, 90
BseMII	CTCAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	94, 389
BsiHKCI	CYCGRG	1 cut(s)	247
BslI	CCNNNNNNNGG	2 cut(s)	59, 90
BsoBI	CYCGRG	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	368
BspCNI	CTCAG	1 cut(s)	103
BspPI	GGATC	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	368
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	3 cut(s)	9, 33, 130
Bst6I	CTCTTC	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	356
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	2 cut(s)	198, 354
BstKTI	GATC	1 cut(s)	371
BstMBI	GATC	1 cut(s)	368
BstV1I	GCAGC	2 cut(s)	94, 389
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BtsCI	GGATG	2 cut(s)	198, 354
BtsIMutI	CAGTG	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	27, 265
CviAII	CATG	1 cut(s)	363
CviJI	RGCY	6 cut(s)	78, 107, 216, 221, 303, 323
CviKI_1	RGCY	6 cut(s)	78, 107, 216, 221, 303, 323
CviQI	GTAC	2 cut(s)	27, 265
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	1 cut(s)	370
DpnII	GATC	1 cut(s)	368
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	225
Eco57I	CTGAAG	2 cut(s)	177, 393
Eco88I	CYCGRG	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	366
FaiI	YATR	8 cut(s)	121, 123, 263, 291, 314, 316, 318, 364
FatI	CATG	1 cut(s)	362
FauNDI	CATATG	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	2 cut(s)	108, 378
FokI	GGATG	2 cut(s)	205, 361
Fsp4HI	GCNGC	2 cut(s)	108, 378
FspBI	CTAG	1 cut(s)	409
GluI	GCNGC	2 cut(s)	108, 378
Hin1II	CATG	1 cut(s)	366
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	176
Hpy166II	GTNNAC	2 cut(s)	12, 29
Hpy188I	TCNGA	4 cut(s)	19, 54, 157, 373
Hpy8I	GTNNAC	2 cut(s)	12, 29
HpyAV	CCTTC	2 cut(s)	157, 163
HpyCH4III	ACNGT	3 cut(s)	9, 33, 130
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	1 cut(s)	366
Kzo9I	GATC	1 cut(s)	368
LpnPI	CCDG	4 cut(s)	43, 52, 255, 404
Lsp1109I	GCAGC	2 cut(s)	94, 389
MaeI	CTAG	1 cut(s)	409
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	2 cut(s)	252, 351
MalI	GATC	1 cut(s)	370
MboI	GATC	1 cut(s)	368
MboII	GAAGA	1 cut(s)	170
MflI	RGATCY	1 cut(s)	368
MluCI	AATT	1 cut(s)	139
MnlI	CCTC	6 cut(s)	47, 81, 87, 106, 223, 271
MseI	TTAA	2 cut(s)	80, 240
MspA1I	CMGCKG	1 cut(s)	323
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	1 cut(s)	368
NlaIII	CATG	1 cut(s)	366
NmeAIII	GCCGAG	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	2 cut(s)	109, 379
Ppu21I	YACGTR	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	2 cut(s)	28, 266
RsaNI	GTAC	2 cut(s)	27, 265
SalI	GTCGAC	1 cut(s)	10
SaqAI	TTAA	2 cut(s)	80, 240
SatI	GCNGC	2 cut(s)	108, 378
Sau3AI	GATC	1 cut(s)	368
SmlI	CTYRAG	2 cut(s)	85, 210
SmoI	CTYRAG	2 cut(s)	85, 210
Sse9I	AATT	1 cut(s)	139
SspMI	CTAG	1 cut(s)	409
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	3 cut(s)	9, 33, 130
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	139
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	2 cut(s)	80, 240
Tru9I	TTAA	2 cut(s)	80, 240
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	252
TseI	GCWGC	2 cut(s)	107, 377
Tsp45I	GTSAC	1 cut(s)	252
TspDTI	ATGAA	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.