helicase protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MOM1 | PF25029 | 43 - 158 | 2.7e-44 | MOM1-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 313, 3444 |
| Acc65I | GGTACC | 3 cut(s) | 3320, 3611, 3791 |
| AccB1I | GGYRCC | 8 cut(s) | 1247, 1511, 3038, 3140, 3241, 3320, 3611, 3791 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 4067 |
| AccI | GTMKAC | 3 cut(s) | 2431, 3115, 3586 |
| AccII | CGCG | 1 cut(s) | 2820 |
| AciI | CCGC | 2 cut(s) | 2818, 2907 |
| AclWI | GGATC | 3 cut(s) | 1597, 1828, 3175 |
| AcoI | YGGCCR | 1 cut(s) | 2886 |
| AcuI | CTGAAG | 8 cut(s) | 30, 344, 1359, 1758, 1869, 1920, 2010, 4002 |
| AdeI | CACNNNGTG | 1 cut(s) | 3344 |
| AfaI | GTAC | 7 cut(s) | 439, 1570, 2164, 2412, 3322, 3613, 3793 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 2420, 2677, 2824, 2996, 3035, 3134, 3467, 3605, 4067 |
| AflIII | ACRYGT | 2 cut(s) | 90, 408 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3896 |
| AjnI | CCWGG | 6 cut(s) | 732, 2127, 2995, 3213, 3466, 3684 |
| AleI | CACNNNNGTG | 1 cut(s) | 3036 |
| AlwI | GGATC | 3 cut(s) | 1597, 1828, 3175 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 203, 430 |
| Ama87I | CYCGRG | 1 cut(s) | 2730 |
| AoxI | GGCC | 5 cut(s) | 986, 1118, 1665, 2886, 3469 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 3167, 3199, 3638, 3670 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 225, 644, 1377, 2826, 3222, 3693 |
| Asp718I | GGTACC | 3 cut(s) | 3320, 3611, 3791 |
| AspLEI | GCGC | 3 cut(s) | 1130, 3715, 4032 |
| AspS9I | GGNCC | 7 cut(s) | 139, 505, 1457, 1466, 1951, 3898, 4071 |
| AsuC2I | CCSGG | 2 cut(s) | 1027, 3239 |
| AsuHPI | GGTGA | 7 cut(s) | 1958, 2130, 3017, 3189, 3488, 3824, 3929 |
| AsuII | TTCGAA | 1 cut(s) | 769 |
| AvaI | CYCGRG | 1 cut(s) | 2730 |
| AvaII | GGWCC | 7 cut(s) | 139, 505, 1457, 1466, 1951, 3898, 4071 |
| AxyI | CCTNAGG | 1 cut(s) | 2014 |
| BaeGI | GKGCMC | 1 cut(s) | 3562 |
| BalI | TGGCCA | 1 cut(s) | 2888 |
| BanI | GGYRCC | 8 cut(s) | 1247, 1511, 3038, 3140, 3241, 3320, 3611, 3791 |
| BanII | GRGCYC | 1 cut(s) | 967 |
| BbsI | GAAGAC | 5 cut(s) | 111, 1349, 2295, 3067, 3538 |
| BceAI | ACGGC | 1 cut(s) | 1499 |
| BciT130I | CCWGG | 6 cut(s) | 734, 2129, 2997, 3215, 3468, 3686 |
| BciVI | GTATCC | 1 cut(s) | 1837 |
| BclI | TGATCA | 2 cut(s) | 1216, 3751 |
| BcnI | CCSGG | 2 cut(s) | 1027, 3239 |
| BfaI | CTAG | 5 cut(s) | 1122, 1424, 1493, 1703, 2867 |
| BfmI | CTRYAG | 8 cut(s) | 309, 422, 456, 1077, 2094, 2898, 3291, 3762 |
| BfoI | RGCGCY | 3 cut(s) | 1131, 3716, 4033 |
| BfuI | GTATCC | 1 cut(s) | 1837 |
| BglII | AGATCT | 1 cut(s) | 1746 |
| BlpI | GCTNAGC | 1 cut(s) | 1873 |
| Bme1390I | CCNGG | 8 cut(s) | 734, 1027, 2129, 2997, 3215, 3239, 3468, 3686 |
| Bme18I | GGWCC | 7 cut(s) | 139, 505, 1457, 1466, 1951, 3898, 4071 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3896 |
| BmeT110I | CYCGRG | 1 cut(s) | 2730 |
| BmgT120I | GGNCC | 7 cut(s) | 139, 505, 1457, 1466, 1951, 3898, 4071 |
| BmrFI | CCNGG | 8 cut(s) | 734, 1027, 2129, 2997, 3215, 3239, 3468, 3686 |
| BmsI | GCATC | 9 cut(s) | 190, 379, 505, 988, 1399, 2194, 2474, 2800, 3986 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3424 |
| BpiI | GAAGAC | 5 cut(s) | 111, 1349, 2295, 3067, 3538 |
| BpmI | CTGGAG | 8 cut(s) | 1290, 1336, 1527, 1926, 2805, 3156, 3627, 3840 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2064 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1873 |
| Bpu14I | TTCGAA | 1 cut(s) | 769 |
| BpuEI | CTTGAG | 5 cut(s) | 143, 872, 1095, 2531, 4033 |
| BpuMI | CCSGG | 2 cut(s) | 1027, 3239 |
| BsaAI | YACGTR | 1 cut(s) | 409 |
| BsaI | GGTCTC | 3 cut(s) | 151, 1553, 2630 |
| BsaJI | CCNNGG | 9 cut(s) | 1026, 1954, 2127, 2142, 2158, 3067, 3237, 3538, 3894 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1315, 1345, 1668, 1698, 2977, 3007 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 2420, 2677, 2824, 2996, 3035, 3134, 3467, 3605, 4067 |
| Bse21I | CCTNAGG | 1 cut(s) | 2014 |
| Bse3DI | GCAATG | 4 cut(s) | 317, 423, 1725, 2328 |
| BseBI | CCWGG | 6 cut(s) | 734, 2129, 2997, 3215, 3468, 3686 |
| BseDI | CCNNGG | 9 cut(s) | 1026, 1954, 2127, 2142, 2158, 3067, 3237, 3538, 3894 |
| BseGI | GGATG | 3 cut(s) | 616, 1090, 1309 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 2420, 2677, 2824, 2996, 3035, 3134, 3467, 3605, 4067 |
| BseMI | GCAATG | 4 cut(s) | 317, 423, 1725, 2328 |
| BseMII | CTCAG | 8 cut(s) | 143, 210, 811, 996, 1149, 2028, 2078, 2454 |
| BseRI | GAGGAG | 4 cut(s) | 3381, 3508, 3852, 3867 |
| BseSI | GKGCMC | 1 cut(s) | 3562 |
| BseYI | CCCAGC | 2 cut(s) | 3635, 3709 |
| BsgI | GTGCAG | 3 cut(s) | 996, 2079, 2208 |
| Bsh1236I | CGCG | 1 cut(s) | 2820 |
| BshFI | GGCC | 5 cut(s) | 988, 1120, 1667, 2888, 3471 |
| BshNI | GGYRCC | 8 cut(s) | 1247, 1511, 3038, 3140, 3241, 3320, 3611, 3791 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2730 |
| BsiSI | CCGG | 3 cut(s) | 1026, 3239, 3951 |
| BslFI | GGGAC | 2 cut(s) | 1479, 3884 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 2420, 2677, 2824, 2996, 3035, 3134, 3467, 3605, 4067 |
| BsmBI | CGTCTC | 2 cut(s) | 3213, 3684 |
| BsmFI | GGGAC | 2 cut(s) | 1479, 3884 |
| BsmI | GAATGC | 2 cut(s) | 1379, 1975 |
| BsnI | GGCC | 5 cut(s) | 988, 1120, 1667, 2888, 3471 |
| Bso31I | GGTCTC | 3 cut(s) | 151, 1553, 2630 |
| BsoBI | CYCGRG | 1 cut(s) | 2730 |
| Bsp119I | TTCGAA | 1 cut(s) | 769 |
| Bsp1286I | GDGCHC | 2 cut(s) | 967, 3562 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1873 |
| Bsp19I | CCATGG | 1 cut(s) | 2158 |
| BspACI | CCGC | 2 cut(s) | 2818, 2907 |
| BspANI | GGCC | 5 cut(s) | 988, 1120, 1667, 2888, 3471 |
| BspCNI | CTCAG | 8 cut(s) | 142, 209, 810, 997, 1150, 2027, 2077, 2453 |
| BspFNI | CGCG | 1 cut(s) | 2820 |
| BspHI | TCATGA | 9 cut(s) | 967, 1213, 1576, 1807, 2554, 2794, 3157, 3628, 3754 |
| BspMAI | CTGCAG | 7 cut(s) | 313, 426, 460, 2098, 2902, 3295, 3766 |
| BspPI | GGATC | 3 cut(s) | 1597, 1828, 3175 |
| BspQI | GCTCTTC | 1 cut(s) | 3972 |
| BspT104I | TTCGAA | 1 cut(s) | 769 |
| BspT107I | GGYRCC | 8 cut(s) | 1247, 1511, 3038, 3140, 3241, 3320, 3611, 3791 |
| BspTNI | GGTCTC | 3 cut(s) | 151, 1553, 2630 |
| BsrDI | GCAATG | 4 cut(s) | 317, 423, 1725, 2328 |
| BssECI | CCNNGG | 9 cut(s) | 1026, 1954, 2127, 2142, 2158, 3067, 3237, 3538, 3894 |
| BssT1I | CCWWGG | 5 cut(s) | 1954, 2158, 3067, 3538, 3894 |
| Bst2UI | CCWGG | 6 cut(s) | 734, 2129, 2997, 3215, 3468, 3686 |
| Bst4CI | ACNGT | 6 cut(s) | 1441, 1731, 1778, 1882, 2135, 2492 |
| Bst6I | CTCTTC | 5 cut(s) | 714, 2484, 2521, 3526, 3972 |
| BstBAI | YACGTR | 1 cut(s) | 409 |
| BstBI | TTCGAA | 1 cut(s) | 769 |
| BstC8I | GCNNGC | 7 cut(s) | 282, 913, 1084, 2215, 2691, 2905, 3963 |
| BstDSI | CCRYGG | 1 cut(s) | 2158 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2675 |
| BstF5I | GGATG | 3 cut(s) | 616, 1090, 1309 |
| BstFNI | CGCG | 1 cut(s) | 2820 |
| BstH2I | RGCGCY | 3 cut(s) | 1131, 3716, 4033 |
| BstHHI | GCGC | 3 cut(s) | 1130, 3715, 4032 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1136, 3712 |
| BstNI | CCWGG | 6 cut(s) | 734, 2129, 2997, 3215, 3468, 3686 |
| BstNSI | RCATGY | 3 cut(s) | 94, 1086, 1685 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3424 |
| BstSCI | CCNGG | 8 cut(s) | 732, 1025, 2127, 2995, 3213, 3237, 3466, 3684 |
| BstSFI | CTRYAG | 8 cut(s) | 309, 422, 456, 1077, 2094, 2898, 3291, 3762 |
| BstSLI | GKGCMC | 1 cut(s) | 3562 |
| BstUI | CGCG | 1 cut(s) | 2820 |
| BstV2I | GAAGAC | 5 cut(s) | 111, 1349, 2295, 3067, 3538 |
| BstX2I | RGATCY | 2 cut(s) | 1602, 1746 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2159 |
| BstYI | RGATCY | 2 cut(s) | 1602, 1746 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2014 |
| BsuI | GTATCC | 1 cut(s) | 1837 |
| BsuRI | GGCC | 5 cut(s) | 988, 1120, 1667, 2888, 3471 |
| BtgI | CCRYGG | 1 cut(s) | 2158 |
| BtsCI | GGATG | 3 cut(s) | 616, 1090, 1309 |
| BtsI | GCAGTG | 1 cut(s) | 431 |
| BtsIMutI | CAGTG | 5 cut(s) | 431, 1551, 1650, 2927, 2957 |
| Cac8I | GCNNGC | 7 cut(s) | 282, 913, 1084, 2215, 2691, 2905, 3963 |
| CaiI | CAGNNNCTG | 2 cut(s) | 203, 430 |
| CciI | TCATGA | 9 cut(s) | 967, 1213, 1576, 1807, 2554, 2794, 3157, 3628, 3754 |
| CfoI | GCGC | 3 cut(s) | 1130, 3715, 4032 |
| Cfr13I | GGNCC | 7 cut(s) | 139, 505, 1457, 1466, 1951, 3898, 4071 |
| CseI | GACGC | 3 cut(s) | 303, 863, 1584 |
| Csp6I | GTAC | 7 cut(s) | 438, 1569, 2163, 2411, 3321, 3612, 3792 |
| CviQI | GTAC | 7 cut(s) | 438, 1569, 2163, 2411, 3321, 3612, 3792 |
| DraIII | CACNNNGTG | 1 cut(s) | 3344 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 313, 3444 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3896 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 313, 3444 |
| EaeI | YGGCCR | 1 cut(s) | 2886 |
| Eam1104I | CTCTTC | 5 cut(s) | 714, 2484, 2521, 3526, 3972 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3896 |
| EarI | CTCTTC | 5 cut(s) | 714, 2484, 2521, 3526, 3972 |
| Eco130I | CCWWGG | 5 cut(s) | 1954, 2158, 3067, 3538, 3894 |
| Eco24I | GRGCYC | 1 cut(s) | 967 |
| Eco31I | GGTCTC | 3 cut(s) | 151, 1553, 2630 |
| Eco32I | GATATC | 1 cut(s) | 294 |
| Eco47I | GGWCC | 7 cut(s) | 139, 505, 1457, 1466, 1951, 3898, 4071 |
| Eco57I | CTGAAG | 8 cut(s) | 30, 344, 1359, 1758, 1869, 1920, 2010, 4002 |
| Eco81I | CCTNAGG | 1 cut(s) | 2014 |
| Eco88I | CYCGRG | 1 cut(s) | 2730 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2675 |
| EcoO109I | RGGNCCY | 2 cut(s) | 139, 1466 |
| EcoRI | GAATTC | 1 cut(s) | 3847 |
| EcoRII | CCWGG | 6 cut(s) | 732, 2127, 2995, 3213, 3466, 3684 |
| EcoRV | GATATC | 1 cut(s) | 294 |
| EcoT14I | CCWWGG | 5 cut(s) | 1954, 2158, 3067, 3538, 3894 |
| EcoT38I | GRGCYC | 1 cut(s) | 967 |
| ErhI | CCWWGG | 5 cut(s) | 1954, 2158, 3067, 3538, 3894 |
| Esp3I | CGTCTC | 2 cut(s) | 3213, 3684 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 336, 368, 1947, 1979, 2673, 2705, 3184, 3216 |
| FaqI | GGGAC | 2 cut(s) | 1479, 3884 |
| FauNDI | CATATG | 1 cut(s) | 2718 |
| FbaI | TGATCA | 2 cut(s) | 1216, 3751 |
| FblI | GTMKAC | 3 cut(s) | 2431, 3115, 3586 |
| FokI | GGATG | 3 cut(s) | 623, 1077, 1316 |
| FriOI | GRGCYC | 1 cut(s) | 967 |
| FspBI | CTAG | 5 cut(s) | 1122, 1424, 1493, 1703, 2867 |
| GlaI | GCGC | 3 cut(s) | 1129, 3714, 4031 |
| GsaI | CCCAGC | 2 cut(s) | 3639, 3713 |
| GsuI | CTGGAG | 8 cut(s) | 1290, 1336, 1527, 1926, 2805, 3156, 3627, 3840 |
| HaeII | RGCGCY | 3 cut(s) | 1131, 3716, 4033 |
| HaeIII | GGCC | 5 cut(s) | 988, 1120, 1667, 2888, 3471 |
| HapII | CCGG | 3 cut(s) | 1026, 3239, 3951 |
| HgaI | GACGC | 3 cut(s) | 303, 863, 1584 |
| HhaI | GCGC | 3 cut(s) | 1130, 3715, 4032 |
| Hin6I | GCGC | 3 cut(s) | 1128, 3713, 4030 |
| HinP1I | GCGC | 3 cut(s) | 1128, 3713, 4030 |
| HincII | GTYRAC | 2 cut(s) | 2237, 3079 |
| HindII | GTYRAC | 2 cut(s) | 2237, 3079 |
| HindIII | AAGCTT | 2 cut(s) | 1113, 2211 |
| HpaII | CCGG | 3 cut(s) | 1026, 3239, 3951 |
| HphI | GGTGA | 7 cut(s) | 1958, 2130, 3017, 3189, 3488, 3824, 3929 |
| Hpy99I | CGWCG | 2 cut(s) | 1735, 3679 |
| HpyCH4III | ACNGT | 6 cut(s) | 1441, 1731, 1778, 1882, 2135, 2492 |
| HpyCH4IV | ACGT | 2 cut(s) | 408, 3081 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1136, 3712 |
| HpySE526I | ACGT | 2 cut(s) | 408, 3081 |
| HspAI | GCGC | 3 cut(s) | 1128, 3713, 4030 |
| KflI | GGGWCCC | 1 cut(s) | 1466 |
| KpnI | GGTACC | 3 cut(s) | 3324, 3615, 3795 |
| Ksp22I | TGATCA | 2 cut(s) | 1216, 3751 |
| LguI | GCTCTTC | 1 cut(s) | 3972 |
| LmnI | GCTCC | 4 cut(s) | 1336, 1546, 2959, 3865 |
| LweI | GCATC | 9 cut(s) | 190, 379, 505, 988, 1399, 2194, 2474, 2800, 3986 |
| MaeI | CTAG | 5 cut(s) | 1122, 1424, 1493, 1703, 2867 |
| MaeII | ACGT | 2 cut(s) | 408, 3081 |
| MfeI | CAATTG | 3 cut(s) | 382, 680, 2573 |
| MflI | RGATCY | 2 cut(s) | 1602, 1746 |
| MhlI | GDGCHC | 2 cut(s) | 967, 3562 |
| MlsI | TGGCCA | 1 cut(s) | 2888 |
| MluNI | TGGCCA | 1 cut(s) | 2888 |
| MlyI | GAGTC | 7 cut(s) | 470, 764, 1016, 1931, 2240, 2285, 2470 |
| MmeI | TCCRAC | 3 cut(s) | 284, 1358, 2671 |
| Mox20I | TGGCCA | 1 cut(s) | 2888 |
| MroXI | GAANNNNTTC | 6 cut(s) | 225, 644, 1377, 2826, 3222, 3693 |
| MscI | TGGCCA | 1 cut(s) | 2888 |
| Msp20I | TGGCCA | 1 cut(s) | 2888 |
| MspA1I | CMGCKG | 1 cut(s) | 1055 |
| MspI | CCGG | 3 cut(s) | 1026, 3239, 3951 |
| MspR9I | CCNGG | 8 cut(s) | 734, 1027, 2129, 2997, 3215, 3239, 3468, 3686 |
| MunI | CAATTG | 3 cut(s) | 382, 680, 2573 |
| Mva1269I | GAATGC | 2 cut(s) | 1379, 1975 |
| MvaI | CCWGG | 6 cut(s) | 734, 2129, 2997, 3215, 3468, 3686 |
| MvnI | CGCG | 1 cut(s) | 2820 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1136, 3712 |
| NciI | CCSGG | 2 cut(s) | 1027, 3239 |
| NcoI | CCATGG | 1 cut(s) | 2158 |
| NdeI | CATATG | 1 cut(s) | 2718 |
| NmeAIII | GCCGAG | 1 cut(s) | 2123 |
| NmuCI | GTSAC | 7 cut(s) | 535, 556, 1645, 3023, 3183, 3494, 3654 |
| NspI | RCATGY | 3 cut(s) | 94, 1086, 1685 |
| NspV | TTCGAA | 1 cut(s) | 769 |
| OliI | CACNNNNGTG | 1 cut(s) | 3036 |
| PaeI | GCATGC | 1 cut(s) | 1086 |
| PagI | TCATGA | 9 cut(s) | 967, 1213, 1576, 1807, 2554, 2794, 3157, 3628, 3754 |
| PciI | ACATGT | 1 cut(s) | 90 |
| PciSI | GCTCTTC | 1 cut(s) | 3972 |
| PctI | GAATGC | 2 cut(s) | 1379, 1975 |
| PdmI | GAANNNNTTC | 6 cut(s) | 225, 644, 1377, 2826, 3222, 3693 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 4067 |
| PfoI | TCCNGGA | 2 cut(s) | 3213, 3684 |
| PleI | GAGTC | 7 cut(s) | 469, 763, 1015, 1930, 2240, 2285, 2470 |
| PpsI | GAGTC | 7 cut(s) | 469, 763, 1015, 1930, 2240, 2285, 2470 |
| Ppu21I | YACGTR | 1 cut(s) | 409 |
| PpuMI | RGGWCCY | 2 cut(s) | 139, 1466 |
| PscI | ACATGT | 1 cut(s) | 90 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3424 |
| Psp5II | RGGWCCY | 2 cut(s) | 139, 1466 |
| Psp6I | CCWGG | 6 cut(s) | 732, 2127, 2995, 3213, 3466, 3684 |
| PspFI | CCCAGC | 2 cut(s) | 3635, 3709 |
| PspGI | CCWGG | 6 cut(s) | 732, 2127, 2995, 3213, 3466, 3684 |
| PspPI | GGNCC | 7 cut(s) | 139, 505, 1457, 1466, 1951, 3898, 4071 |
| PspPPI | RGGWCCY | 2 cut(s) | 139, 1466 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1509, 1541 |
| PstI | CTGCAG | 7 cut(s) | 313, 426, 460, 2098, 2902, 3295, 3766 |
| PstNI | CAGNNNCTG | 2 cut(s) | 203, 430 |
| PsuI | RGATCY | 2 cut(s) | 1602, 1746 |
| PvuII | CAGCTG | 1 cut(s) | 1055 |
| RsaI | GTAC | 7 cut(s) | 439, 1570, 2164, 2412, 3322, 3613, 3793 |
| RsaNI | GTAC | 7 cut(s) | 438, 1569, 2163, 2411, 3321, 3612, 3792 |
| SapI | GCTCTTC | 1 cut(s) | 3972 |
| Sau96I | GGNCC | 7 cut(s) | 139, 505, 1457, 1466, 1951, 3898, 4071 |
| SchI | GAGTC | 7 cut(s) | 470, 764, 1016, 1931, 2240, 2285, 2470 |
| ScrFI | CCNGG | 8 cut(s) | 734, 1027, 2129, 2997, 3215, 3239, 3468, 3686 |
| SduI | GDGCHC | 2 cut(s) | 967, 3562 |
| SfaNI | GCATC | 9 cut(s) | 190, 379, 505, 988, 1399, 2194, 2474, 2800, 3986 |
| SfcI | CTRYAG | 8 cut(s) | 309, 422, 456, 1077, 2094, 2898, 3291, 3762 |
| SfuI | TTCGAA | 1 cut(s) | 769 |
| SinI | GGWCC | 7 cut(s) | 139, 505, 1457, 1466, 1951, 3898, 4071 |
| SmlI | CTYRAG | 5 cut(s) | 122, 887, 1110, 2546, 4048 |
| SmoI | CTYRAG | 5 cut(s) | 122, 887, 1110, 2546, 4048 |
| SphI | GCATGC | 1 cut(s) | 1086 |
| SsiI | CCGC | 2 cut(s) | 2818, 2907 |
| SspMI | CTAG | 5 cut(s) | 1122, 1424, 1493, 1703, 2867 |
| StyD4I | CCNGG | 8 cut(s) | 732, 1025, 2127, 2995, 3213, 3237, 3466, 3684 |
| StyI | CCWWGG | 5 cut(s) | 1954, 2158, 3067, 3538, 3894 |
| TaaI | ACNGT | 6 cut(s) | 1441, 1731, 1778, 1882, 2135, 2492 |
| TaiI | ACGT | 2 cut(s) | 411, 3084 |
| TaqI | TCGA | 5 cut(s) | 28, 769, 1968, 3479, 3999 |
| TaqII | GACCGA | 1 cut(s) | 2654 |
| TatI | WGTACW | 2 cut(s) | 437, 1568 |
| TscAI | CASTG | 5 cut(s) | 431, 1551, 1650, 2934, 2964 |
| TseFI | GTSAC | 7 cut(s) | 535, 556, 1645, 3023, 3183, 3494, 3654 |
| Tsp45I | GTSAC | 7 cut(s) | 535, 556, 1645, 3023, 3183, 3494, 3654 |
| TspGWI | ACGGA | 4 cut(s) | 1819, 2820, 3301, 3772 |
| TspRI | CASTG | 5 cut(s) | 431, 1551, 1650, 2934, 2964 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 4067 |
| VpaK11BI | GGWCC | 7 cut(s) | 139, 505, 1457, 1466, 1951, 3898, 4071 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2675 |
| XbaI | TCTAGA | 1 cut(s) | 1492 |
| XceI | RCATGY | 3 cut(s) | 94, 1086, 1685 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2258, 2881 |
| XmiI | GTMKAC | 3 cut(s) | 2431, 3115, 3586 |
| XmnI | GAANNNNTTC | 6 cut(s) | 225, 644, 1377, 2826, 3222, 3693 |
| XspI | CTAG | 5 cut(s) | 1122, 1424, 1493, 1703, 2867 |