Rw5G035920

helicase protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
62707098 .. 62724846
17749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G035920.1

Sequence Viewer

Length: 6354 bp
ATGCAGTTAAATATGGCACATGATACACGATCTAGTCGGAAAGTCAAGGATGACGAAAGTACCAATTCAATTGGGAGGCAGGTTAGTAGTAAAGGATCCAGCACTTCAGGCTCCTCAACATCGGATACACCTGTCTTAAGGAGGTCTTCTAGAGAAACATTGTTGAAGAAAAACAACACTCTGAGCCCTTCTAGTACTCGGAAGTCTGAACGACTTGAGAAACAAACACCTGAAACTCCTCCAGTTAAGAGGAAATCTGAGAGATTTGAGAATAAGTCAACCCCGAGTCCTTTAAGGAGGTCCGAGAGAGGCAAGACTCACTCATCCACTTCTTCTGCATCCAAAACATCTGATAAAAGCTTGGATTCGTCATCAATGAAGGGGAAAAGGGAAAAGAAAGAGAAGAGTGTGAAAGAATTGACTTTGGGAACTAAAGAACTTCGCAAAAGTGAGAAACAAAATGTAGGACCTGGGCAAGTCAAACAAAAAAGGTTGAACACTCGTGATTATATCGCATATCACCAAGGGCGCCTTAATGCACCAGATCATGTTCAGAAGCAGAGTGAAGAACGTTCACCTCCACCATGTTATAAGGCCATAACTGAAGAGATTAATCATGCACCTGAAAGGGTACAGGTGGATTGTGCTGCCATGGGAAATTCTAAGACGCCAGAGTTGGCAACTTCTACGTCGAATGGAAGGATTTCTGATGTTCACACTGGCTCAGAAGGCAGTGACTGTATTACACCTTCTAAAAGAAAAAGGAAGATGGTTGATGGAGGATCTGATTATGCTGGAGTAAATGCAAGTAAAGATGTCTGCACAGGGGTTGATACTGTCTCGTCTTTGCCATCTGGGTCGACAGGAAATGTTCCAGTTGAAACCTGTGGTGTCTGTTTCAAGCGACAAAGGGTAGACAATGATTCAATGAAGCAGGAATGTTGCTCTTGTGGAACAAAACTGAATCAGGAGTTATCTGGTGCTGTAAATGAGCCGGATAGTGGAGAAGTCATAGCTGATAGTACAGTGAGCCAACCTGAAAAGTTTAACATTTGTATGCAGCAAAAGGAGTTGTCTGCAGAACTCATAACAAATGGTGAAGAAAATAGTGAAAATACATGCCTCATTTGCACTTTTGGGGGGAAGCTCTTGTGCTGTGATGGAAAAGGATGCAAGAGAAGCTATCATCTTTCATGTCTAGATCCTCCTATGAATGCTGCTCCTATTGGAGTTTGGCACTGTTCTGTGTGTGTTAAGAAAAAGATAGAATCTGGTATACATTCCGTGTCAGATGGACAGGAGTCACTCGGGAATGCTAGACAAGTGGAGGTATCAGATGCTGATGATTTTTCCAGGTTTATAGAGTACTGGGTTCCTGTAGAGATATCGAATGTTCAGCGAGAGCTATACTGTGAAAAGCTACTGTTAAACCCCTCATTACTTCAGTCATCTTCAACAAAAGATCTCGTTGGAGCACTCCACGATCTACTTAGATCTACCCGAAAGTGCTGTGATCACCCTTACATTGAGGAAGCATCTTTACAAGAGAAGGTTATGGAATTTGAAGGCCTTCAAGCAATTGACAGTTTCGATGTAAAAAAGAAAGCAATGTTGGATGCAGGAATAAAAGCTTGCGGCAAGCTTCACATTCTTGACATGATGCTTATGGAGATAAAGAATCGAGGTTTAAGAGTGCTAATCCTATTTCAGTCAATAGGTGGTCTGGGAATTTGTATAGGAGATATTTTGGATGATTTCCTGCGTCAAAGGTATGGTGAAGACTCTTATGAACGGGTTGAACAGGGTGTTGTTCCCTCTAAGAAAGGTGAGGCAATGGGCAAGTTTAACAATAAGGAATGTGGTAGGTTTGTGTTTTTATTGGAGACTCGTGCCTGTCGTGCCAGCATCAAACTATCGTCAGTTGATACTATTATTATATATGGTAGTGACTGGAACCCAGTGAATGATGTAAGAGCCTTGCAAAAGATATCACTTGATTCACAATTTGAGCAGATAAAAGTATTTCGCTTATATTCAACTTGTACCATAGAGGAGAAAGTTCTGATTCTGGCAAAGGAGGAAAAGATTCTTGATAGCAATTTGCTTAATATTACCAAGAATAATTGTCAACTGCTACTTTCGTGGGGTGCACCTTATCAATTTGTTAAACTGAATGAGTTCCATTGCCACAATTCGCTCGCGTCTAGTGAAAGTATCTTACCCGTAGAATCACCTCTGAAAGATGTCATCCAGGAATTTGTGTCCCTACTTTCTCAGGATGCCAAAAACAATGGCTTGGGTGGTTTCTCTGTTATATCAAAAGCTCATCAAACTGGAGGAGGTTACAGTACGAAGAATCTGTTGTTTGGCGAATTGAAATCTCAACATATGGGTGATGGGAAACCACTTAGTTTTTGGATAAAACTGTGGGAGGGAAAGCATCCTCAGTGGAAATATTGTGTTGGTTTGTCCCAGAGGAACAGGAAAAGGGTAAAACATACTGATGAGGACCTATCAAAGAAACCACAAGTTGAAAGTGATGAATCTGTAAAAAAACGGAAGAAGGTGGGAAATAGTAATAATGATTCGGCCAACTTAAAGCCTGGATTTGAGGGAAAATCAATCCCTGTATCTGAGGATGGAGCTTCTGTAACTCCAGCAGACAATGTGCCTCACTCTTCTTCTAGGTTATCTGCATTTGTAAATAATATAATTGGTGAAAACCGTGTTTGTACTTCACATAATTTTGCTAAAAGCACAAGACCAGAAAGTGACATGTTTGAATCTAAGGAGAGAAGAAAATTGCTTGATGCCCAAAAGAGTCTGCATCTTCATTTGAAGCCAGAGATATCAAAACTTTGTGGAATCCTGCAACTCTCAGATCTTCACAAGGTTTGGGTTGAAAAGTTTCTTGAATATGTCATGAAGAATCACAATGTTACTAGAGAACCAGCAAACATATTGCAGGCATTTCAGATATCTCTGTGTTGGACTGTGGCTTCAATTCTGAAGCACAAAGTCGACCACAAAGAATCTTTTGCACGTGCTAAGCAGCATCTTAACTTCAATTGCCAAAAGGAAGAGGCGGACCGTGTTTATTCAATGCTGCGGTGTCTGAAGAAAACGTTTCTATACCGCACAAGGAATTTTAAGGCTGCAGACCCTCCAAATTTCTCTGAACTCTCAAATAATGGTACAATTTCAAACTTGGAGGGGGTCAAATCAGGTGTTGAAGACTATCAGCTATATTTAGCAGGAAAAGATGTCTCAAAATGTATCAATGAAATTCAGAAAAAGTTCCAGAAGAAGATGAAAAAACTTGTTGAGAAGCAATCTAAAGAGAGAAGTGAACTTTTGAGATTATACGAGGAGCAAAAGGAGCAACTCGAAATGAAGCACAAAATAGAGTTGGCTGTAAATCGAATTACTTCAATGAGTGCAGATAGTTTGAGGGTCAAGGAAACTGAATTTGAAAAGGAAATTGAAGAGCATAAACACAAGGTGGACATACATTTGCAGCTTCTCGAGAAATTGCAGCTGGAAGCAAGGCTTAAGCTGAAAGAGAATGAGAACCAACGGGTAGAGGAAGTGCAAAAGTGGGTTCGTGATGAGTTGTTGAATAATTCACCTTCAAATGCACCTGATGAAACTGTAGCGTGTAGCAGTCCTCTTAGAACAGTCACGACTCCAGCTAGACTGATTGTTGCAAATGGTGCACTTGATCCAATCACTTCTGAGGTTTTTTATAGTACTGGGAAAAACAAGGATGGCGTTTCTGGTGATAATCAAGCAAACGTTGCTACTGTGATTCCTTGTGCCAAAGAGCTGATGACTAATGGAGACACTTCAGAAAATGGGGAGGCTCTGCTGGATGTCCCGGAAATTATCTGCTCTAGCAAAGTTGTCACCTCCAGTCTTCCTTCATTTGAAGAAAGGATTGACAAGTCTGATAAATCACCCATTTGTGATAGGGTTGTCAGACTGGAAGAGCCCATAACTGTCAGTCCACTGACTCTATCTGCTACAGAACAGAATCCTCATTTGGCTACATTAAGCATGGCTGACAGAGAGGCTCCACTGGAATTGCATGAGACCGTTAGTTCGATTCATGGGGTGCATGATGATGCAAACATACCAGGTAATATGGTTGAGTCGGCAGTGGATGCAACTGTCAGTTCGAATGATGCCCTACAGAATCCTCTCTCTAGGGTTCCGCCTGCAGAAATAGAAAATGGTGAAGTGCAAGTTACTGCATCTGATATTGCAACTGGGGTCAACCAGCAGAAAGGAGTTGATACTGAGTTATTGTCAGCTGCTCAATCTGTTGCAACTATAGATTCTGAGCACTCAGACCATGAAGTGGCGACCAATGAGCCTGTAGTACCATCCTCGGAGACACCAGACCGTAGTCCTCCTCAGTTATCTTCAGCTGCTGGAATTAAAAATCAGCCAAGTAGTGAGAACCGAGTTCAAGGTACCGTCTTGGCTGCATCGACTACAGGGCAAGATGGAAATGCACACACTAGCGAAAAGCAGAATACTTGCCTACCTGTTGAAAATCTAGCGTCCCAATCTGTTGCGATCATAACATCCGATCAATCTGATCACGAAGAGTCGGTGGCACAGTTATCTAATAGACCCGAGTTATCTTCAGCTTGTGCAATTGAAGTTCATCAAAGTATCGAAAATCAAGACAGAGGTGTTCTGTTAGCCACATCCACAGCAGTACAAGATGGAGATGCACAAGCTACTGGGAATCAGAATACATGTCAACCAGTTGAAGATCGAGTATCCCAATTTGTTGCCACTGTAGAATCTGATCATGAAGGGCAGACGAATGCAGCTGTAGTACAATTGCAGCTTCCTGAGTCTGCAGCTGGTGGAATTGAAATTCGGCCAAGGAGGGTAGACCACACCTCTAACCAAGTTTCTCAGGCTCCACTGCAATTTGTTGAGAACTATTCTGTTCAATCAAATGAAACCGCTTTGCAGCCTGCACCAAGTCTTTCTTTGCATCAGCCTATGGATATACCTACTAATGGATTTGGGCTGCCTTTTTCAGACACACGGGCTACTTCTGTAACTAATAGTCGTCCTATACATGCTGCTCCCCAGGGGACACTAAGGATGCCTCAGCATTCGTACCCTGATCCACTTCAAAATGAATTGGAAAGATTAAATAAAGATATGGAACAAAACATGAAGTCTCATGAAGATAAGAAGCTGCGTCTGAAATCTGATTATGACAAGAAAATAGAGGAGGCTGTTGCTGAACTTCGTCGGCAATGTGAGACTAAACTTCAGGAGGAAGAAGCCGAATTTCGGCATATACAGAAGGAACTAGATGCAAATTACAATAAAGTTTTAATGAATAAGATTTTGGCTGAGGCTTTCAGGTCTAAATGCATGGATCTTAAGGCATCAAGTGCATGCGGAGTGCAGCAAGATGGAAATTCTAGTTTTGTCCAGCAGCTGGTTCAGTTATCTATGCAGCAAAATGCACATAGGCCTTCTTCAGTTTCTAGTTCATCGTCAACCAGCCTTCCTGCAGCTAGCCTGCAGACTTCTATTGCACCCTTACCCAGCCAGCAGGCTTCTATTGCTCCAACACCCAGCCTGCAGACTTTTAGTGCACCCTTACCCAGCCAGCAGGCTTCTATTGCTCCAACACCCAGCCTGCAGACTTTTAGTGCACCCTTACCCAGCCAGCAGGCTTCTATTGCTCCAATACCCAGCCTGCAGACTTCTAGTGCACCCTTACCCAGCCTGCAAACGACCCTACCTGCATCTGCGATTGCACCTAGTCAGCATTACACAGCTCCAATCATGCAGACTGTTCCACTTTCCCCTGCTTCTCCGTCCATTCCAGCAAGACCCCCTCACATTGGTACCTTCTCTGGCTCCACAGGAATCCCCCAAGGTGGAGGTCAGATTCGTGCCCCAGCCCCACATCTCCAACCATTTAGGCCTTCAACTTCCGTTACAGGCACCAGTCCTCTGTCCCAGCAAGGTGGGATGTCAACTCCCCGTTCTCATAGCAACGGCCCTGCAACATCTTCTGTACTTCCTCATATGCCACAAATACCAGCTCCCACACAACAAACTGTTCCCTCTAGTGGGGCCCAACATGTTGAAAGTGCAGGACGTAGCTCAACTCCTCATTCTGCGTCTGCGTTGAAGTTGCTTATGGATATGGAGAATCGTACTGGTGCAAATCGATCAGGTGGTTTGTTGCCACCACTGACTCCAAGTTCATTTAATCATCCTGATCCTGCCACTGCAAGTAGTGCATCTGCCAACCCAGTAAATACAGGTGGAACCCCTGACGTAGTTTGTTTATCGGACGATGACTAA

Protein Analysis

2117

Amino Acids

231.44

Weight (kDa)

6.29

Isoelectric Point (pI)

55.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helicase_C PF00271 550 - 658 2.4e-06 Helicase conserved C-terminal domain
MOM1 PF25029 937 - 1059 5.3e-56 MOM1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 591
Acc36I ACCTGC 2 cut(s) 70, 5791
Acc65I GGTACC 2 cut(s) 4475, 5888
AccB1I GGYRCC 4 cut(s) 528, 4475, 5888, 5987
AccB7I CCANNNNNTGG 2 cut(s) 4360, 5473
AccI GTMKAC 5 cut(s) 860, 915, 1276, 3021, 4908
AccII CGCG 1 cut(s) 2201
AciI CCGC 7 cut(s) 1635, 3086, 3109, 3136, 4214, 4983, 5433
AclI AACGTT 3 cut(s) 571, 3125, 3795
AclWI GGATC 8 cut(s) 90, 103, 790, 1196, 3716, 5144, 5418, 6263
AcoI YGGCCR 2 cut(s) 2589, 4895
AcvI CACGTG 1 cut(s) 3044
AcyI GRCGYC 2 cut(s) 529, 668
AdeI CACNNNGTG 1 cut(s) 3502
AfiI CCNNNNNNNGG 9 cut(s) 1001, 4360, 5039, 5322, 5473, 5885, 5921, 6116, 6117
AflII CTTAAG 3 cut(s) 136, 3551, 5414
AflIII ACRYGT 3 cut(s) 2775, 4766, 6127
AjnI CCWGG 6 cut(s) 469, 1352, 2250, 2602, 4135, 5112
AjuI GAANNNNNNNTTGG 6 cut(s) 1595, 1627, 4025, 4057, 5363, 5395
Alw21I GWGCWC 7 cut(s) 1477, 2152, 3718, 4347, 5635, 5695, 5755
Alw26I GTCTC 8 cut(s) 844, 1877, 3271, 3834, 4085, 4388, 5211, 5285
Alw44I GTGCAC 5 cut(s) 2148, 3714, 5631, 5691, 5751
AlwI GGATC 8 cut(s) 90, 103, 790, 1196, 3716, 5144, 5418, 6263
AlwNI CAGNNNCTG 4 cut(s) 738, 1340, 4433, 5473
Ama87I CYCGRG 4 cut(s) 283, 1307, 3524, 4640
AoxI GGCC 8 cut(s) 594, 1567, 2589, 4895, 5507, 5966, 6043, 6120
ApaI GGGCCC 1 cut(s) 6124
ApaLI GTGCAC 5 cut(s) 2148, 3714, 5631, 5691, 5751
ArsI GACNNNNNNTTYG 2 cut(s) 4084, 4116
AseI ATTAAT 1 cut(s) 612
Asp700I GAANNNNTTC 7 cut(s) 703, 1569, 2085, 2177, 2907, 3296, 3427
Asp718I GGTACC 2 cut(s) 4475, 5888
AspLEI GCGC 1 cut(s) 531
AspS9I GGNCC 7 cut(s) 300, 467, 2509, 3088, 6044, 6120, 6121
AsuC2I CCSGG 1 cut(s) 3878
AsuII TTCGAA 1 cut(s) 4178
AsuNHI GCTAGC 1 cut(s) 5552
AvaI CYCGRG 4 cut(s) 283, 1307, 3524, 4640
AvaII GGWCC 4 cut(s) 300, 467, 2509, 3088
BaeGI GKGCMC 7 cut(s) 2152, 3718, 5635, 5695, 5755, 5941, 6124
BaeI ACNNNNGTAYC 6 cut(s) 43, 76, 117, 150, 5872, 5905
BamHI GGATCC 1 cut(s) 95
BanI GGYRCC 4 cut(s) 528, 4475, 5888, 5987
BanII GRGCYC 3 cut(s) 188, 3993, 6124
BarI GAAGNNNNNNTAC 4 cut(s) 733, 765, 1524, 1556
BauI CACGAG 2 cut(s) 501, 1887
BbrPI CACGTG 1 cut(s) 3044
BbsI GAAGAC 4 cut(s) 138, 1785, 3240, 3908
Bbv12I GWGCWC 7 cut(s) 1477, 2152, 3718, 4347, 5635, 5695, 5755
BbvCI CCTCAGC 2 cut(s) 5133, 5385
BceAI ACGGC 1 cut(s) 6058
BciT130I CCWGG 6 cut(s) 471, 1354, 2252, 2604, 4137, 5114
BciVI GTATCC 2 cut(s) 118, 4801
BclI TGATCA 3 cut(s) 1513, 4603, 4819
BcnI CCSGG 1 cut(s) 3878
BcoDI GTCTC 8 cut(s) 844, 1877, 3271, 3834, 4085, 4388, 5211, 5285
BfoI RGCGCY 1 cut(s) 532
BfrI CTTAAG 3 cut(s) 136, 3551, 5414
BfuAI ACCTGC 2 cut(s) 70, 5791
BfuI GTATCC 2 cut(s) 118, 4801
BglII AGATCT 3 cut(s) 1462, 1493, 2881
BlpI GCTNAGC 1 cut(s) 3048
BmcAI AGTACT 3 cut(s) 196, 1367, 3751
Bme1390I CCNGG 7 cut(s) 471, 1354, 2252, 2604, 3878, 4137, 5114
Bme18I GGWCC 4 cut(s) 300, 467, 2509, 3088
BmeT110I CYCGRG 4 cut(s) 283, 1307, 3524, 4640
BmgT120I GGNCC 7 cut(s) 300, 467, 2509, 3088, 6044, 6120, 6121
BmrFI CCNGG 7 cut(s) 471, 1354, 2252, 2604, 3878, 4137, 5114
BmrI ACTGGG 6 cut(s) 1378, 1952, 3762, 4278, 4761, 6296
BmtI GCTAGC 1 cut(s) 5556
BmuI ACTGGG 6 cut(s) 1378, 1952, 3762, 4278, 4761, 6296
BoxI GACNNNNGTC 2 cut(s) 1300, 4407
BpiI GAAGAC 4 cut(s) 138, 1785, 3240, 3908
BpmI CTGGAG 6 cut(s) 225, 816, 2355, 2640, 3672, 3895
Bpu10I CCTNAGC 2 cut(s) 5133, 5385
Bpu1102I GCTNAGC 1 cut(s) 3048
Bpu14I TTCGAA 1 cut(s) 4178
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 3878
Bsa29I ATCGAT 1 cut(s) 6217
BsaAI YACGTR 1 cut(s) 3044
BsaHI GRCGYC 2 cut(s) 529, 668
BsaI GGTCTC 1 cut(s) 4085
BsaJI CCNNGG 8 cut(s) 470, 523, 651, 4389, 4898, 5112, 5113, 5917
BsaXI ACNNNNNCTCC 2 cut(s) 2634, 2664
Bsc4I CCNNNNNNNGG 9 cut(s) 1001, 4360, 5039, 5322, 5473, 5885, 5921, 6116, 6117
Bse3DI GCAATG 4 cut(s) 1614, 1839, 2182, 5291
BseBI CCWGG 6 cut(s) 471, 1354, 2252, 2604, 4137, 5114
BseCI ATCGAT 1 cut(s) 6217
BseDI CCNNGG 8 cut(s) 470, 523, 651, 4389, 4898, 5112, 5113, 5917
BseLI CCNNNNNNNGG 9 cut(s) 1001, 4360, 5039, 5322, 5473, 5885, 5921, 6116, 6117
BseMI GCAATG 4 cut(s) 1614, 1839, 2182, 5291
BseRI GAGGAG 8 cut(s) 103, 228, 2066, 2352, 3383, 4404, 5273, 6147
BseSI GKGCMC 7 cut(s) 2152, 3718, 5635, 5695, 5755, 5941, 6124
BseYI CCCAGC 9 cut(s) 5582, 5612, 5642, 5672, 5702, 5732, 5762, 5941, 6003
BsgI GTGCAG 5 cut(s) 805, 3459, 4980, 5459, 6159
Bsh1236I CGCG 1 cut(s) 2201
BshFI GGCC 8 cut(s) 596, 1569, 2591, 4897, 5509, 5968, 6045, 6122
BshNI GGYRCC 4 cut(s) 528, 4475, 5888, 5987
BshVI ATCGAT 1 cut(s) 6217
BsiHKAI GWGCWC 7 cut(s) 1477, 2152, 3718, 4347, 5635, 5695, 5755
BsiHKCI CYCGRG 4 cut(s) 283, 1307, 3524, 4640
BsiSI CCGG 2 cut(s) 995, 3878
BslFI GGGAC 6 cut(s) 2248, 2455, 3860, 4552, 5131, 5986
BslI CCNNNNNNNGG 9 cut(s) 1001, 4360, 5039, 5322, 5473, 5885, 5921, 6116, 6117
BsmAI GTCTC 8 cut(s) 844, 1877, 3271, 3834, 4085, 4388, 5211, 5285
BsmFI GGGAC 6 cut(s) 2248, 2455, 3860, 4552, 5131, 5986
BsmI GAATGC 4 cut(s) 1219, 1318, 4843, 5137
BsnI GGCC 8 cut(s) 596, 1569, 2591, 4897, 5509, 5968, 6045, 6122
Bso31I GGTCTC 1 cut(s) 4085
BsoBI CYCGRG 4 cut(s) 283, 1307, 3524, 4640
Bsp119I TTCGAA 1 cut(s) 4178
Bsp120I GGGCCC 1 cut(s) 6120
Bsp1720I GCTNAGC 1 cut(s) 3048
Bsp19I CCATGG 1 cut(s) 651
BspACI CCGC 7 cut(s) 1635, 3086, 3109, 3136, 4214, 4983, 5433
BspANI GGCC 8 cut(s) 596, 1569, 2591, 4897, 5509, 5968, 6045, 6122
BspDI ATCGAT 1 cut(s) 6217
BspFNI CGCG 1 cut(s) 2201
BspHI TCATGA 3 cut(s) 2922, 4822, 5209
BspMAI CTGCAG 9 cut(s) 1081, 3160, 4222, 4876, 5551, 5562, 5622, 5682, 5742
BspMI ACCTGC 2 cut(s) 70, 5791
BspOI GCTAGC 1 cut(s) 5556
BspPI GGATC 8 cut(s) 90, 103, 790, 1196, 3716, 5144, 5418, 6263
BspQI GCTCTTC 2 cut(s) 3480, 3981
BspT104I TTCGAA 1 cut(s) 4178
BspT107I GGYRCC 4 cut(s) 528, 4475, 5888, 5987
BspTI CTTAAG 3 cut(s) 136, 3551, 5414
BspTNI GGTCTC 1 cut(s) 4085
BsrDI GCAATG 4 cut(s) 1614, 1839, 2182, 5291
BssECI CCNNGG 8 cut(s) 470, 523, 651, 4389, 4898, 5112, 5113, 5917
BssNAI GTATAC 1 cut(s) 1277
BssNI GRCGYC 2 cut(s) 529, 668
BssSI CACGAG 2 cut(s) 501, 1887
BssT1I CCWWGG 4 cut(s) 523, 651, 4898, 5917
Bst1107I GTATAC 1 cut(s) 1277
Bst2BI CACGAG 2 cut(s) 501, 1887
Bst2UI CCWGG 6 cut(s) 471, 1354, 2252, 2604, 4137, 5114
Bst6I CTCTTC 7 cut(s) 398, 600, 2683, 3075, 3480, 3981, 4605
BstACI GRCGYC 2 cut(s) 529, 668
BstAFI CTTAAG 3 cut(s) 136, 3551, 5414
BstAPI GCANNNNNTGC 5 cut(s) 3713, 3797, 4163, 5426, 6287
BstBAI YACGTR 1 cut(s) 3044
BstBI TTCGAA 1 cut(s) 4178
BstDSI CCRYGG 1 cut(s) 651
BstFNI CGCG 1 cut(s) 2201
BstH2I RGCGCY 1 cut(s) 532
BstHHI GCGC 1 cut(s) 531
BstMAI GTCTC 8 cut(s) 844, 1877, 3271, 3834, 4085, 4388, 5211, 5285
BstNI CCWGG 6 cut(s) 471, 1354, 2252, 2604, 4137, 5114
BstNSI RCATGY 6 cut(s) 1122, 2779, 4770, 5105, 5433, 6131
BstPAI GACNNNNGTC 2 cut(s) 1300, 4407
BstSCI CCNGG 7 cut(s) 469, 1352, 2250, 2602, 3876, 4135, 5112
BstSLI GKGCMC 7 cut(s) 2152, 3718, 5635, 5695, 5755, 5941, 6124
BstUI CGCG 1 cut(s) 2201
BstV2I GAAGAC 4 cut(s) 138, 1785, 3240, 3908
BstX2I RGATCY 7 cut(s) 95, 782, 1201, 1462, 1493, 2881, 5410
BstXI CCANNNNNNTGG 1 cut(s) 6011
BstYI RGATCY 7 cut(s) 95, 782, 1201, 1462, 1493, 2881, 5410
BstZ17I GTATAC 1 cut(s) 1277
Bsu15I ATCGAT 1 cut(s) 6217
BsuI GTATCC 2 cut(s) 118, 4801
BsuRI GGCC 8 cut(s) 596, 1569, 2591, 4897, 5509, 5968, 6045, 6122
BsuTUI ATCGAT 1 cut(s) 6217
BtgI CCRYGG 1 cut(s) 651
BtsI GCAGTG 4 cut(s) 739, 4164, 4940, 6276
BveI ACCTGC 2 cut(s) 70, 5791
CaiI CAGNNNCTG 4 cut(s) 738, 1340, 4433, 5473
CciI TCATGA 3 cut(s) 2922, 4822, 5209
CfoI GCGC 1 cut(s) 531
Cfr13I GGNCC 7 cut(s) 300, 467, 2509, 3088, 6044, 6120, 6121
ClaI ATCGAT 1 cut(s) 6217
CpoI CGGWCCG 1 cut(s) 3088
CseI GACGC 6 cut(s) 676, 1751, 2190, 4554, 5216, 6156
CsiI ACCWGGT 1 cut(s) 4135
CspCI CAANNNNNGTGG 2 cut(s) 4065, 4100
CspI CGGWCCG 1 cut(s) 3088
DinI GGCGCC 1 cut(s) 530
DraIII CACNNNGTG 1 cut(s) 3502
EaeI YGGCCR 2 cut(s) 2589, 4895
Eam1104I CTCTTC 7 cut(s) 398, 600, 2683, 3075, 3480, 3981, 4605
EarI CTCTTC 7 cut(s) 398, 600, 2683, 3075, 3480, 3981, 4605
EciI GGCGGA 2 cut(s) 3101, 4203
Eco130I CCWWGG 4 cut(s) 523, 651, 4898, 5917
Eco147I AGGCCT 3 cut(s) 1569, 5509, 5968
Eco24I GRGCYC 3 cut(s) 188, 3993, 6124
Eco31I GGTCTC 1 cut(s) 4085
Eco32I GATATC 4 cut(s) 1386, 1989, 2850, 2979
Eco47I GGWCC 4 cut(s) 300, 467, 2509, 3088
Eco72I CACGTG 1 cut(s) 3044
Eco88I CYCGRG 4 cut(s) 283, 1307, 3524, 4640
EcoO109I RGGNCCY 3 cut(s) 467, 2509, 6120
EcoRII CCWGG 6 cut(s) 469, 1352, 2250, 2602, 4135, 5112
EcoRV GATATC 4 cut(s) 1386, 1989, 2850, 2979
EcoT14I CCWWGG 4 cut(s) 523, 651, 4898, 5917
EcoT22I ATGCAT 1 cut(s) 5408
EcoT38I GRGCYC 3 cut(s) 188, 3993, 6124
EgeI GGCGCC 1 cut(s) 530
EheI GGCGCC 1 cut(s) 530
ErhI CCWWGG 4 cut(s) 523, 651, 4898, 5917
FalI AAGNNNNNCTT 8 cut(s) 130, 162, 516, 548, 3534, 3566, 4993, 5025
FaqI GGGAC 6 cut(s) 2248, 2455, 3860, 4552, 5131, 5986
FauNDI CATATG 2 cut(s) 2388, 6072
FbaI TGATCA 3 cut(s) 1513, 4603, 4819
FblI GTMKAC 5 cut(s) 860, 915, 1276, 3021, 4908
FriOI GRGCYC 3 cut(s) 188, 3993, 6124
GlaI GCGC 1 cut(s) 530
GsaI CCCAGC 9 cut(s) 5586, 5616, 5646, 5676, 5706, 5736, 5766, 5945, 6007
GsuI CTGGAG 6 cut(s) 225, 816, 2355, 2640, 3672, 3895
HaeII RGCGCY 1 cut(s) 532
HaeIII GGCC 8 cut(s) 596, 1569, 2591, 4897, 5509, 5968, 6045, 6122
HapII CCGG 2 cut(s) 995, 3878
HgaI GACGC 6 cut(s) 676, 1751, 2190, 4554, 5216, 6156
HhaI GCGC 1 cut(s) 531
Hin1I GRCGYC 2 cut(s) 529, 668
Hin6I GCGC 1 cut(s) 529
HinP1I GCGC 1 cut(s) 529
HincII GTYRAC 8 cut(s) 279, 861, 2129, 3022, 4276, 4772, 5535, 6021
HindII GTYRAC 8 cut(s) 279, 861, 2129, 3022, 4276, 4772, 5535, 6021
HindIII AAGCTT 3 cut(s) 358, 1629, 1640
HpaII CCGG 2 cut(s) 995, 3878
Hpy99I CGWCG 2 cut(s) 694, 5283
HpyCH4IV ACGT 7 cut(s) 571, 689, 3043, 3125, 3795, 6145, 6327
HpySE526I ACGT 7 cut(s) 571, 689, 3043, 3125, 3795, 6145, 6327
Hsp92I GRCGYC 2 cut(s) 529, 668
HspAI GCGC 1 cut(s) 529
KasI GGCGCC 1 cut(s) 528
KpnI GGTACC 2 cut(s) 4479, 5892
Ksp22I TGATCA 3 cut(s) 1513, 4603, 4819
LguI GCTCTTC 2 cut(s) 3480, 3981
MabI ACCWGGT 1 cut(s) 4135
MaeII ACGT 7 cut(s) 571, 689, 3043, 3125, 3795, 6145, 6327
MfeI CAATTG 5 cut(s) 69, 1578, 3067, 4662, 4853
MflI RGATCY 7 cut(s) 95, 782, 1201, 1462, 1493, 2881, 5410
Mly113I GGCGCC 1 cut(s) 529
MmeI TCCRAC 7 cut(s) 17, 1450, 1593, 2969, 5630, 5690, 5980
Mph1103I ATGCAT 1 cut(s) 5408
MroXI GAANNNNTTC 7 cut(s) 703, 1569, 2085, 2177, 2907, 3296, 3427
MslI CAYNNNNRTG 4 cut(s) 1055, 2391, 2502, 4122
MspA1I CMGCKG 6 cut(s) 3538, 4313, 4430, 4844, 4877, 5473
MspCI CTTAAG 3 cut(s) 136, 3551, 5414
MspI CCGG 2 cut(s) 995, 3878
MspR9I CCNGG 7 cut(s) 471, 1354, 2252, 2604, 3878, 4137, 5114
MunI CAATTG 5 cut(s) 69, 1578, 3067, 4662, 4853
Mva1269I GAATGC 4 cut(s) 1219, 1318, 4843, 5137
MvaI CCWGG 6 cut(s) 471, 1354, 2252, 2604, 4137, 5114
MvnI CGCG 1 cut(s) 2201
NarI GGCGCC 1 cut(s) 529
NciI CCSGG 1 cut(s) 3878
NcoI CCATGG 1 cut(s) 651
NdeI CATATG 2 cut(s) 2388, 6072
NheI GCTAGC 1 cut(s) 5552
NmuCI GTSAC 6 cut(s) 734, 1302, 1946, 2771, 3679, 3904
NsiI ATGCAT 1 cut(s) 5408
NspI RCATGY 6 cut(s) 1122, 2779, 4770, 5105, 5433, 6131
NspV TTCGAA 1 cut(s) 4178
PaeI GCATGC 1 cut(s) 5433
PaeR7I CTCGAG 1 cut(s) 3524
PagI TCATGA 3 cut(s) 2922, 4822, 5209
PasI CCCWGGG 1 cut(s) 5113
PceI AGGCCT 3 cut(s) 1569, 5509, 5968
PciI ACATGT 3 cut(s) 2775, 4766, 6127
PciSI GCTCTTC 2 cut(s) 3480, 3981
PcsI WCGNNNNNNNCGW 1 cut(s) 1894
PctI GAATGC 4 cut(s) 1219, 1318, 4843, 5137
PdmI GAANNNNTTC 7 cut(s) 703, 1569, 2085, 2177, 2907, 3296, 3427
PflMI CCANNNNNTGG 2 cut(s) 4360, 5473
PfoI TCCNGGA 2 cut(s) 2250, 3876
PluTI GGCGCC 1 cut(s) 532
PmaCI CACGTG 1 cut(s) 3044
PmlI CACGTG 1 cut(s) 3044
Ppu21I YACGTR 1 cut(s) 3044
PpuMI RGGWCCY 2 cut(s) 467, 2509
PscI ACATGT 3 cut(s) 2775, 4766, 6127
PshAI GACNNNNGTC 2 cut(s) 1300, 4407
PshBI ATTAAT 1 cut(s) 612
PsiI TTATAA 1 cut(s) 591
Psp1406I AACGTT 3 cut(s) 571, 3125, 3795
Psp5II RGGWCCY 2 cut(s) 467, 2509
Psp6I CCWGG 6 cut(s) 469, 1352, 2250, 2602, 4135, 5112
PspCI CACGTG 1 cut(s) 3044
PspFI CCCAGC 9 cut(s) 5582, 5612, 5642, 5672, 5702, 5732, 5762, 5941, 6003
PspGI CCWGG 6 cut(s) 469, 1352, 2250, 2602, 4135, 5112
PspOMI GGGCCC 1 cut(s) 6120
PspPI GGNCC 7 cut(s) 300, 467, 2509, 3088, 6044, 6120, 6121
PspPPI RGGWCCY 2 cut(s) 467, 2509
PstI CTGCAG 9 cut(s) 1081, 3160, 4222, 4876, 5551, 5562, 5622, 5682, 5742
PstNI CAGNNNCTG 4 cut(s) 738, 1340, 4433, 5473
PsuI RGATCY 7 cut(s) 95, 782, 1201, 1462, 1493, 2881, 5410
PvuII CAGCTG 6 cut(s) 3538, 4313, 4430, 4844, 4877, 5473
RseI CAYNNNNRTG 4 cut(s) 1055, 2391, 2502, 4122
Rsr2I CGGWCCG 1 cut(s) 3088
RsrII CGGWCCG 1 cut(s) 3088
SalI GTCGAC 2 cut(s) 859, 3020
SapI GCTCTTC 2 cut(s) 3480, 3981
Sau96I GGNCC 7 cut(s) 300, 467, 2509, 3088, 6044, 6120, 6121
ScaI AGTACT 3 cut(s) 196, 1367, 3751
ScrFI CCNGG 7 cut(s) 471, 1354, 2252, 2604, 3878, 4137, 5114
SexAI ACCWGGT 1 cut(s) 4135
SfoI GGCGCC 1 cut(s) 530
Sfr274I CTCGAG 1 cut(s) 3524
SfuI TTCGAA 1 cut(s) 4178
SinI GGWCC 4 cut(s) 300, 467, 2509, 3088
SlaI CTCGAG 1 cut(s) 3524
SmiMI CAYNNNNRTG 4 cut(s) 1055, 2391, 2502, 4122
SmlI CTYRAG 5 cut(s) 136, 215, 3524, 3551, 5414
SmoI CTYRAG 5 cut(s) 136, 215, 3524, 3551, 5414
SphI GCATGC 1 cut(s) 5433
SseBI AGGCCT 3 cut(s) 1569, 5509, 5968
SsiI CCGC 7 cut(s) 1635, 3086, 3109, 3136, 4214, 4983, 5433
SspDI GGCGCC 1 cut(s) 528
SspI AATATT 2 cut(s) 2110, 2456
StuI AGGCCT 3 cut(s) 1569, 5509, 5968
StyD4I CCNGG 7 cut(s) 469, 1352, 2250, 2602, 3876, 4135, 5112
StyI CCWWGG 4 cut(s) 523, 651, 4898, 5917
TaiI ACGT 7 cut(s) 574, 692, 3046, 3128, 3798, 6148, 6330
TatI WGTACW 8 cut(s) 194, 1022, 1365, 2732, 3749, 4726, 4849, 6061
TauI GCSGC 1 cut(s) 1638
TseFI GTSAC 6 cut(s) 734, 1302, 1946, 2771, 3679, 3904
Tsp45I GTSAC 6 cut(s) 734, 1302, 1946, 2771, 3679, 3904
TspGWI ACGGA 4 cut(s) 1273, 2572, 5847, 5968
Van91I CCANNNNNTGG 2 cut(s) 4360, 5473
Vha464I CTTAAG 3 cut(s) 136, 3551, 5414
VneI GTGCAC 5 cut(s) 2148, 3714, 5631, 5691, 5751
VpaK11BI GGWCC 4 cut(s) 300, 467, 2509, 3088
VspI ATTAAT 1 cut(s) 612
XbaI TCTAGA 2 cut(s) 149, 1198
XceI RCATGY 6 cut(s) 1122, 2779, 4770, 5105, 5433, 6131
XcmI CCANNNNNNNNNTGG 1 cut(s) 2412
XhoI CTCGAG 1 cut(s) 3524
XmiI GTMKAC 5 cut(s) 860, 915, 1276, 3021, 4908
XmnI GAANNNNTTC 7 cut(s) 703, 1569, 2085, 2177, 2907, 3296, 3427
ZrmI AGTACT 3 cut(s) 196, 1367, 3751
Zsp2I ATGCAT 1 cut(s) 5408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.