Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001065

Physical Location & Seq

Genomic Coordinates Reverse (-)

26503748 .. 26525372

Gene Structure 21625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g31740.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6147 bp

ATGCAGAAAAATATGGCGCATGACACACGATCTAGTCGGAAAGTCAAGGATGACGAGAGTAACAATTCAATCGGGAGGCAGATTAGTAGTAAAGGATCCAGTACTTCCGGCTCCTCAACGTCAGATACACCTGTCTTAAGAAGGTCTTCTAGAGAAACATTGTTGAAGAAAAACAACACTCTGAGCCCTTCTAGTACTCGGAAGTCTGAACAACTTGAGAAACCAATACCTGAAACTCCTCCAGCTAAGAAGAAATCTGAGATAGTTGAGAATAAGTCCACGCCAAGTCCTTTAAGGAGGTCCGAGAGAGGCAAGACTCACTCATCCACTTCTTCTGCATCTAAAACATCTAATAACAGCTTGGATTCATTATTAATGAAGGGGATTAGGGAAAAGAAAGAGAAGACTGTGAAAGAATTGACCTTGGGAACTAAAGAACTTTGCAAAAGCGAGAAACAAAATGTAGGACATGGACTGGTCAAACAAAAAAGATTGAACTCTCGTGCTTATATTGCAAGTCTCCTAAAACATGCTAAAGCACCAGATCATGTTCCGAAGCAGAGTGATGAACTTACACTGCAACCATGTCATAATGCCATAACTGAAGATATTGATCATGTGTCTGAAAGGGTACATGTGGATGGTACTGCATTAAAGACGCCAGAGCTGACAACTTCTACATCGAATGGAAGGATTTCTGCTGTTCATACTGGCTTAGAAGACAGCGACTGTATTACACCTTCTAAAAGAAAAAGGAAGATGGCTGATGGATCTGATTCTTCTGGAGTAAATGCAAGTAAAGATGTCTGCACTGTGGTTGATACCGGCTCGGCTTTGCCATCTGGGTGTACAGGAAATGTTTCGGTTGAAACATGTGGTATCTGTTTCAAGCGACAAAGGGTAGACAATGATCCAATGAAGCAGGAAAGTTGCTCTTGTGGAACAAAATTGAATCAGGAGTTTTCTGGTGGTGCAAATAAGCAGAAGGAGTTGTCTGCAGATCTCCAATCAAATGGTGAAGAAAATAGTCAAAATACTTGCCTCATTTGCACTTTTGGAGGGAAGCTCTTGTGCTGTGATGGAAAAGGATGCAAGAGAAGCTATCATCTTTCTTGTCTAGATCCTCCTATGAATGATGCTCCTATTGGAGTCTGGCACTGTTCTGTGTGTGTTCAGAAAAAGATAGAATCCAGAATACTATCTATATCAGATGGACCAGAGTCACTCAGAAATGCTAGAAATCTGGAGGTATCAGATGCCGATGATTCTTCCAGGTTTATAGAGTACTGGGTTCCTGTAGAGATATCAAATGTTCAGCGAGAGCTATACTGTGAAAAGCTACTGTTAAATCCCTCATTGCTTCACTTATCTTCATCAAAAGATCTTGTTGGAGCACTCCCTGATCTACTTAGATCTACCCGAAAGTGCTGTGATCACCCTTACATTGAGGAAGCATCTTTACAAGAGAAAGTTATGGAATTTGAAGGCCTTCAAGCAATTGACAGTTTCGAAGTAAAAAAGAAAGCAATGTTGGATGCAGGAATAAAGGCAAGTGGCAAGCTTCAGCTTCTTGACATGATGCTTATGGAGATAAAGAATAGAGGTCTAAGAGCTCTAATCCTATTTCAGTCAACAGGTGGTCTGGGAATTTTGATAGGAGATATATTGGATGATTTCCTGCGTCAAAGGTATGGTGAAGACTCTTATGAACGAGTTGAACAGGGTGTTGTTCCTGCTAAGAAAGGTGAGGCAATGGACAAGTTTAACAATAAGGACTGTGGTAGGTTTGTGTTTTTATTGGAGACTCGTGCCTGTCGTTCCAGCATCAAACTATCATCAGTTGATACTATTATTATATTTGGTAGTGACTGGAACCCAGTGAATGATGTAAGAGCCTTGCAAAAGATATCAATCGATTCACAGTTTGAGCAGATAAAAGTATTTCGCTTATATTCAACTTGTACCATAGAGGAGAAAGTTCTGATTCTGGCAAAGGAGGAGAAGATTCTTGATAGCTATCTGCATAATATTACCAAGTATAATTGTCAGTTGCTACTTTCGTGGGGTGCACCTTATCAATTTGTTAAACTGAATGAGTTCCATGGAAACAACTCGCCAGGCTCCAGTGTAACACCTCTGAAAGATGTCATCCAGGAATTTGTATCCCTACTTCCTCAGGATGCCAAAAACAGTGGCTTCAGTGGTTTCTCTGTTATCACAAGAGCTCATCAAACAGGAGGAGGTTACAGTGCGAAGACTATCTTGTTTGGTGAATTGAAATGTCAACATATGGGTGATGGGAAACCACTTAGTTTTTGGTTAAAACTGTGGGAGGGAAAGCATCCTCAGTGGAAATATTGTATTGGTTTGTCTCAGAGGAACAGAAAAAGGGTAAAACATACTGACGAACTATCAAAGAAACCACAAGTTGAAAGTGATGAAGCTGTAAAGAAACGGAAGAAGGTGGGAAATAGTAATAACGACTCGGCCAATTTAAAGCCTGGATTTGAGGGAAAATCAACTCCTGTGTCTGAGGATGGAGCTTCTGTAACTCGAGCAGACCATGTGCCTCGCTCTTCTTCTAGGTTATCTGCTTTTGTAGATAATGAAAGCATTTTAGCAATACCAGAAAGTGACAATTCTGAGGAGAGAAGGAAAGTGCTTGATGCACAGAAGAGTCTGCATCTTCATTTGAAGCCTGAGATATCAAAACTTTGTGGGATCCTACAATTCTCAGAGCTTCACAAGGTTTGGGTTGAAAAGTTTCTTGAATATGTAGTGAAGAATCACAATGTTAATAGAGAATCAGCAACCATATTGCAGGCATTTCAGATATCTGTGTGTTGGACTGTGGCTTCAATTCTGAAGCACAAAGTCGACCACAAAGAATCGTTTGCACTTACAAAGCGGCATCTTAGCTTCAATTGCCAAAAGGAAGAGGTGGATCGTGTTTATTCAATGTTGCGGTGTCTGAAGAAAACGTTTCTATACCGTACAGGGAATTTTAAGGCTGCAGATTCTCCAAATTTTTCTGAACTTCCAAATAATGGTACAATTTCAAACTTGCAGGGGGTCAAATCAGGTGTTGAAGACTATCAGATATATTTAGTGAAAAAGGATCTCTCAAAATGCATCAATGAAATTCAGAAAAAGTTTGAGAAGAAGATGAAAAAACTTCTTGAGAAACAATGTGAAGAGAGAAGTCGAGTTTTGAAATTTCTCGAGTTGGAAAAGGAGCAACTTGAAAAGAAGCACAAAATAGAGTTGGCTGTAAATCGAATTGCTTCAGTGAGTGCAGATAGACTGAGGATCATGGAAACTGACTTTGAAAAGGAAATTGAAGAGCATAAACACCGAGTGGACATACAATTGCAAGTTCTTGAGAAATTACAGCTGGAAGCAAGGCTTAAGCTCAAAGAGAAAGAAAACCTACGAGTAGAGGATGTGCAAAATTGGGTTCGTGATGAGTTATTGAATAGGTCACCTTCAAATGCACCTGATGAGATTGTAGCGTGTACCAGTCCTGTTGCAACAGTCACAACTCCAACTGGACCCATTATTCCAAATGGTGCACTTGATCCAATGAATTCTGAGGTTTTTTATTTCAGTGGGAAATACAAGAATAGCATTTCTGGTGATAATCAAGCAAATGTTGCTTCTGTGATTCCTTGTGCCAAAGAGCTGATGACTAATGGAGGCACATCAGAAAATGGAGAGGCTCTGCTGGATGTCCCGGAATTCTGCTCTAGCAAAGTTGTCACCCCCGGTCTTCCTTCTTTTGAGGAAAGGATTGACAAGTCTGACAAATTACCCATTCGTGATAGGGATGTTGGAGCGGAAGATCTTGTAACTGTCGGTTCAACTGATGGTCCACTGACTCATTCTGGTACAGAACAGTATCCTCATGGGGCTGCATTAAGCATGCCTGACAGAGAGGCTCCACTAGAATTGCATGAGACTGTCAGTTCGATTCATGGTGTGCATAATGTTGGGTCTGTGAGCCCATGTGCATCTGAAGAACAAATCCGTGTAGTAACAGTAAATATACCAGGTAATGAGGTTGAGTCGGCAGTGGTTGCAACTGTCAGTTCCAATGATGCTGTGAGGAATCTTCTCAATAGGGTTCCAACTTCATCTGAACAAATGATTGTTGAAAATCCTACAGAAACAGAGAGCGGTGAAGTGCTTTTTACTGCATCTGATGTTGTAACTGGGTTCAACCAGCAGAAAGGAGTTGATAACGAGTTATCTTCAGCTGCTCAATCGGTTGCAAATATAGAGTCTGAGCAGTCAGACCATGAACTGGCCACCAATATGCCTGGAGGACCATCCTCTGAGACACCAGACCCTAGTCCTCAGGTTTCTTCAGCTGCTGGTGAGAACAGAGTCCAAGATACTGTATTGGCCACATCGTTTACAGGGCACGATGGAAATGCACAAGCTTGCGAAAAGCATATTACTTGCCTACCAGTTGAAAATTTAGCATCGCAAAATGTTGTGATCAGAGCATCTGATCAATCTGATCATGAAGAGTTGGTGGTGCAGTTATCTAATAGAAATGAATTATCTTCAGCTTGTGAACATCAAAGAATTGAAAATCAAGACAGTGGTATTCTGTTAGCCACTTCTGCTACGGTACAAGGTGGAGATGGAGATGGACGAGCTACTGGGAACCAGATTACATGCCAACCACTTGAAAATCCAGTATCCCAATCTGTTGCCATTGTAGAATCTGATCAAGCAGTGCCAACCAATGCAGCTTTAGTACAACTGCAGCTTCCTCCTGAGTCTGCAGCTGGTGGAATTGAAATTCAGCCAAGAAGGGAAGACCACACTTCTAACCAAGTTTCTCATGCTCCAATGCAACGTGTGGAGACGTATTCTAATCAATCAACTGAAACTACTTTGCCGCCTGCATCAAGTCTTTCCTTACATCAGCCCATTGATATACCTACAAATGGATTTGGGCTGCCTTGTTCAGACACACGGGCTACTTCTGCAACTAATAGTCGTCCTATTCATGCTGCTCCCCAAGGGACGCTAAGGATGCCTCACTATTCATACCCTGACCCACTTCAAAATGAACTGGAAAGATTGAATAAAGAAATGGAACAAAACATTAAGTCTCATGAAGATAAGAAGCTGCATCTGAAATCTGATTACGACAAGAAAATAGAGGAGGCTGTTGCTGAACTTCATCGGCAGTGTGAGACTAAACTTCAGAAGGAAGAAGCCGAATTTCAACATAAACAGAAGGAACTTGATGCAAATCACAACAAAGTTTTAATGAATAAGATTTTGGCTGAGGCTTTCAGGTCTAAATGTATGGATCTTAGAGCATCAAATGTGTGCGGAGTGCAGCAAGATGGAAATTCTACTTTCATCCAGCAGCTTGTTCAGTTCACTATGCAGCAAAATGCACAGAGGCCTTCTTCAGTTTCTAATTCATCATCGACCAGCCTTCCTGCAGCTAGCCTGCAGACTTCTATTTCACCCTCACCCAGCCACCAGGCTTCTATTGTTCCGATGCTCAACATGCAGACTTCTAGTGCACCCAGCCTGCAAACGACCCTACCTGCATCTGCAATTGCACCCAGTCAACATTACACGGCTCCAATCATGCAGACTGTTCCACTTTCACATGCTTCTCCGTCCATTCCAGCAAGACCCCCTCACATTGGTACCTTCTCTGGCTCCACAGGAATCCCCCAAGGTGGAGGTCAGATTCGTTCCCCAGCCCCGCATCTCCAACCATTTAGGCCTTCAACATCCGTTGCAGGGACCAGTCCTCTGTTTCAGCAAGGGGGGATGTCAAATCCCCATTCGCATAGCAACTCCCTAGCAACTTCTCCATCACTTCCTCATATGCCTCAAATGCCAGCTCCCACACAACAAACTGTTCCCTCTAGTGGGGTCCAACATGTTGAAAGTGCAGGAGATAGCGCAGCGCCTAATTCTGCATCTGCGTTGAAGTTGCTTATGGATATGGAGAAACGTTCTGGTGCAAATCGACAAGGTGGTTTGTTGTCACTGCCGGCTTTAGATTCATTGAACCCTCCCGGTCCTGTTTTTGTGAGTAGTGCCTCTGCCAACCCAGTAAATACAGGTGGAATTCATGACATAGTTTGTTTATCGGACGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006342 GO:0006344 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

Chromo Helicase_C SNF2_N

Protein Analysis

2049

Amino Acids

224.27

Weight (kDa)

6.3

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	346 - 389	9.5e-06	PHD-finger
Helicase_C	PF00271	521 - 630	9.9e-07	Helicase conserved C-terminal domain
MOM1	PF25029	888 - 1011	2.9e-54	MOM1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08060 AT1G08060 AT1G08060
fragaria_vesca	FvH4_3g31740 FvH4_3g31740 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540
malus_domestica	MD03G1121600.v1.1 MD11G1139900.v1.1 MD11G1140000.v1.1
prunus_persica	Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104700_v2.0.a1
pyrus_communis	pycom11g11560 pycom11g11580
rosa_chinensis	RchiOBHm_Chr4g0405411 RchiOBHm_Chr5g0058411
rosa_laevigata	RLG00000008844 RLG00000035218
rosa_multiflora	Rmu_sc0000367.1_g000115 Rmu_sc0000575.1_g000013
rosa_roxburghii	Rroxscaffold_1G00022120 Rroxscaffold_1G00022140 Rroxscaffold_5G00349880
rosa_rugosa	Rorug04G0059700 Rorug04G0059800 Rorug04G0059900 Rorug04G0060000 Rorug05G0313800 Rorug05G0313800 Rorug05G0313900 Rorug05G0314000 Rorug05G0314100
rosa_samantha	Rh4AG131700 Rh4BG126600 Rh4CG139100 Rh4DG125700 Rh5AG381300 Rh5BG392800 Rh5CG416900 Rh5DG408000
rosa_wichuraiana	Rw4G010660 Rw5G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	5584
Acc65I	GGTACC	1 cut(s)	5681
AccB1I	GGYRCC	1 cut(s)	5681
AccB7I	CCANNNNNTGG	2 cut(s)	3047, 4303
AccBSI	CCGCTC	2 cut(s)	3836, 4176
AccI	GTMKAC	2 cut(s)	903, 2877
AciI	CCGC	7 cut(s)	2908, 2965, 3836, 4176, 4910, 5352, 5741
AclI	AACGTT	2 cut(s)	2981, 5995
AcoI	YGGCCR	3 cut(s)	2487, 4305, 4404
AcyI	GRCGYC	1 cut(s)	659
AdeI	CACNNNGTG	1 cut(s)	3358
AfiI	CCNNNNNNNGG	8 cut(s)	3047, 4303, 4958, 5678, 5714, 5778, 5909, 5910
AflII	CTTAAG	2 cut(s)	136, 3407
AflIII	ACRYGT	4 cut(s)	634, 872, 4867, 5920
AjnI	CCWGG	7 cut(s)	1271, 2116, 2151, 2500, 4048, 4318, 5508
AjuI	GAANNNNNNNTTGG	4 cut(s)	1514, 1546, 5282, 5314
Alw21I	GWGCWC	6 cut(s)	1396, 1615, 2071, 2227, 3574, 5554
Alw26I	GTCTC	8 cut(s)	524, 1796, 2376, 3950, 4331, 4868, 5130, 5204
Alw44I	GTGCAC	3 cut(s)	2067, 3570, 5550
AlwNI	CAGNNNCTG	2 cut(s)	729, 4373
Ama87I	CYCGRG	2 cut(s)	2553, 3221
AoxI	GGCC	6 cut(s)	1486, 2487, 4305, 4404, 5426, 5759
ApaLI	GTGCAC	3 cut(s)	2067, 3570, 5550
ArsI	GACNNNNNNTTYG	4 cut(s)	3949, 3981, 4265, 4297
AseI	ATTAAT	1 cut(s)	374
Asp700I	GAANNNNTTC	7 cut(s)	145, 694, 859, 1488, 2096, 2763, 3283
Asp718I	GGTACC	1 cut(s)	5681
AspLEI	GCGC	3 cut(s)	19, 5945, 5950
AspS9I	GGNCC	8 cut(s)	300, 1214, 3551, 3869, 4325, 5781, 5914, 6062
AsuC2I	CCSGG	3 cut(s)	3734, 3765, 6060
AsuII	TTCGAA	1 cut(s)	1509
AsuNHI	GCTAGC	1 cut(s)	5471
AvaI	CYCGRG	2 cut(s)	2553, 3221
AvaII	GGWCC	8 cut(s)	300, 1214, 3551, 3869, 4325, 5781, 5914, 6062
AxyI	CCTNAGG	2 cut(s)	2175, 4356
BaeGI	GKGCMC	4 cut(s)	2071, 3574, 4425, 5554
BaeI	ACNNNNGTAYC	4 cut(s)	117, 150, 5665, 5698
BalI	TGGCCA	2 cut(s)	4307, 4406
BamHI	GGATCC	2 cut(s)	95, 2721
BanI	GGYRCC	1 cut(s)	5681
BanII	GRGCYC	4 cut(s)	188, 1615, 2227, 4004
BarI	GAAGNNNNNNTAC	6 cut(s)	724, 756, 1443, 1475, 2154, 2186
BauI	CACGAG	2 cut(s)	501, 1806
BbsI	GAAGAC	8 cut(s)	138, 410, 726, 1704, 2261, 3096, 3761, 4833
Bbv12I	GWGCWC	6 cut(s)	1396, 1615, 2071, 2227, 3574, 5554
BbvCI	CCTCAGC	1 cut(s)	5304
BceAI	ACGGC	1 cut(s)	5625
BcgI	CGANNNNNNTGC	2 cut(s)	4415, 4449
BciT130I	CCWGG	7 cut(s)	1273, 2118, 2153, 2502, 4050, 4320, 5510
BciVI	GTATCC	3 cut(s)	2173, 3909, 4717
BclI	TGATCA	6 cut(s)	613, 1432, 4500, 4513, 4522, 4735
BcnI	CCSGG	3 cut(s)	3734, 3765, 6060
BcoDI	GTCTC	8 cut(s)	524, 1796, 2376, 3950, 4331, 4868, 5130, 5204
BfmI	CTRYAG	8 cut(s)	996, 1296, 3012, 4161, 4772, 4791, 5466, 5477
BfoI	RGCGCY	1 cut(s)	5951
BfrI	CTTAAG	2 cut(s)	136, 3407
BfuAI	ACCTGC	1 cut(s)	5584
BfuI	GTATCC	3 cut(s)	2173, 3909, 4717
BglII	AGATCT	4 cut(s)	1000, 1381, 1412, 3841
BmcAI	AGTACT	3 cut(s)	103, 196, 1286
Bme18I	GGWCC	8 cut(s)	300, 1214, 3551, 3869, 4325, 5781, 5914, 6062
BmeT110I	CYCGRG	2 cut(s)	2553, 3221
BmgT120I	GGNCC	8 cut(s)	300, 1214, 3551, 3869, 4325, 5781, 5914, 6062
BmrI	ACTGGG	6 cut(s)	1297, 1871, 4221, 4677, 5589, 6089
BmtI	GCTAGC	1 cut(s)	5475
BmuI	ACTGGG	6 cut(s)	1297, 1871, 4221, 4677, 5589, 6089
BoxI	GACNNNNGTC	2 cut(s)	1219, 4350
BpiI	GAAGAC	8 cut(s)	138, 410, 726, 1704, 2261, 3096, 3761, 4833
BplI	GAGNNNNNCTC	2 cut(s)	1050, 1082
BpmI	CTGGAG	5 cut(s)	225, 804, 1265, 2107, 4341
Bpu10I	CCTNAGC	2 cut(s)	5042, 5304
Bpu14I	TTCGAA	1 cut(s)	1509
BpuEI	CTTGAG	3 cut(s)	236, 3200, 3401
BpuMI	CCSGG	3 cut(s)	3734, 3765, 6060
Bsa29I	ATCGAT	1 cut(s)	1914
BsaBI	GATNNNNATC	4 cut(s)	612, 1910, 2016, 5268
BsaHI	GRCGYC	1 cut(s)	659
BsaJI	CCNNGG	5 cut(s)	423, 2101, 3763, 5032, 5710
BsaXI	ACNNNNNCTCC	2 cut(s)	2532, 2562
Bsc4I	CCNNNNNNNGG	8 cut(s)	3047, 4303, 4958, 5678, 5714, 5778, 5909, 5910
Bse118I	RCCGGY	2 cut(s)	824, 6034
Bse21I	CCTNAGG	2 cut(s)	2175, 4356
Bse3DI	GCAATG	3 cut(s)	1355, 1533, 1758
Bse8I	GATNNNNATC	4 cut(s)	612, 1910, 2016, 5268
BseBI	CCWGG	7 cut(s)	1273, 2118, 2153, 2502, 4050, 4320, 5510
BseCI	ATCGAT	1 cut(s)	1914
BseDI	CCNNGG	5 cut(s)	423, 2101, 3763, 5032, 5710
BseJI	GATNNNNATC	4 cut(s)	612, 1910, 2016, 5268
BseLI	CCNNNNNNNGG	8 cut(s)	3047, 4303, 4958, 5678, 5714, 5778, 5909, 5910
BseMI	GCAATG	3 cut(s)	1355, 1533, 1758
BseRI	GAGGAG	7 cut(s)	103, 228, 1985, 2012, 2253, 2660, 5192
BseSI	GKGCMC	4 cut(s)	2071, 3574, 4425, 5554
BseYI	CCCAGC	3 cut(s)	5501, 5555, 5734
BsgI	GTGCAG	5 cut(s)	793, 3315, 4562, 5378, 5952
BshFI	GGCC	6 cut(s)	1488, 2489, 4307, 4406, 5428, 5761
BshNI	GGYRCC	1 cut(s)	5681
BshVI	ATCGAT	1 cut(s)	1914
BsiHKAI	GWGCWC	6 cut(s)	1396, 1615, 2071, 2227, 3574, 5554
BsiHKCI	CYCGRG	2 cut(s)	2553, 3221
BsiSI	CCGG	6 cut(s)	108, 825, 3734, 3765, 6035, 6060
BslFI	GGGAC	3 cut(s)	3716, 5050, 5794
BslI	CCNNNNNNNGG	8 cut(s)	3047, 4303, 4958, 5678, 5714, 5778, 5909, 5910
BsmAI	GTCTC	8 cut(s)	524, 1796, 2376, 3950, 4331, 4868, 5130, 5204
BsmBI	CGTCTC	1 cut(s)	4868
BsmFI	GGGAC	3 cut(s)	3716, 5050, 5794
BsnI	GGCC	6 cut(s)	1488, 2489, 4307, 4406, 5428, 5761
BsoBI	CYCGRG	2 cut(s)	2553, 3221
Bsp119I	TTCGAA	1 cut(s)	1509
Bsp1286I	GDGCHC	9 cut(s)	188, 1396, 1615, 2071, 2227, 3574, 4004, 4425, 5554
Bsp1407I	TGTACA	1 cut(s)	848
Bsp19I	CCATGG	1 cut(s)	2101
BspACI	CCGC	7 cut(s)	2908, 2965, 3836, 4176, 4910, 5352, 5741
BspANI	GGCC	6 cut(s)	1488, 2489, 4307, 4406, 5428, 5761
BspDI	ATCGAT	1 cut(s)	1914
BspHI	TCATGA	3 cut(s)	4525, 5128, 6115
BspMAI	CTGCAG	6 cut(s)	1000, 3016, 4776, 4795, 5470, 5481
BspMI	ACCTGC	1 cut(s)	5584
BspOI	GCTAGC	1 cut(s)	5475
BspQI	GCTCTTC	2 cut(s)	2581, 3336
BspT104I	TTCGAA	1 cut(s)	1509
BspT107I	GGYRCC	1 cut(s)	5681
BspTI	CTTAAG	2 cut(s)	136, 3407
BsrBI	CCGCTC	2 cut(s)	3836, 4176
BsrDI	GCAATG	3 cut(s)	1355, 1533, 1758
BsrFI	RCCGGY	2 cut(s)	824, 6034
BsrGI	TGTACA	1 cut(s)	848
BssAI	RCCGGY	2 cut(s)	824, 6034
BssECI	CCNNGG	5 cut(s)	423, 2101, 3763, 5032, 5710
BssNI	GRCGYC	1 cut(s)	659
BssSI	CACGAG	2 cut(s)	501, 1806
BssT1I	CCWWGG	4 cut(s)	423, 2101, 5032, 5710
Bst2BI	CACGAG	2 cut(s)	501, 1806
Bst2UI	CCWGG	7 cut(s)	1273, 2118, 2153, 2502, 4050, 4320, 5510
Bst6I	CTCTTC	6 cut(s)	2581, 2669, 2931, 3189, 3336, 4524
BstACI	GRCGYC	1 cut(s)	659
BstAFI	CTTAAG	2 cut(s)	136, 3407
BstAPI	GCANNNNNTGC	2 cut(s)	3653, 4076
BstAUI	TGTACA	1 cut(s)	848
BstBI	TTCGAA	1 cut(s)	1509
BstDSI	CCRYGG	1 cut(s)	2101
BstEII	GGTNACC	1 cut(s)	3480
BstH2I	RGCGCY	1 cut(s)	5951
BstHHI	GCGC	3 cut(s)	19, 5945, 5950
BstMAI	GTCTC	8 cut(s)	524, 1796, 2376, 3950, 4331, 4868, 5130, 5204
BstNI	CCWGG	7 cut(s)	1273, 2118, 2153, 2502, 4050, 4320, 5510
BstNSI	RCATGY	8 cut(s)	533, 638, 876, 3925, 4686, 5539, 5645, 5924
BstPAI	GACNNNNGTC	2 cut(s)	1219, 4350
BstPI	GGTNACC	1 cut(s)	3480
BstSFI	CTRYAG	8 cut(s)	996, 1296, 3012, 4161, 4772, 4791, 5466, 5477
BstSLI	GKGCMC	4 cut(s)	2071, 3574, 4425, 5554
BstV2I	GAAGAC	8 cut(s)	138, 410, 726, 1704, 2261, 3096, 3761, 4833
BstXI	CCANNNNNNTGG	1 cut(s)	1013
Bsu15I	ATCGAT	1 cut(s)	1914
Bsu36I	CCTNAGG	2 cut(s)	2175, 4356
BsuI	GTATCC	3 cut(s)	2173, 3909, 4717
BsuRI	GGCC	6 cut(s)	1488, 2489, 4307, 4406, 5428, 5761
BsuTUI	ATCGAT	1 cut(s)	1914
BtgI	CCRYGG	1 cut(s)	2101
BtgZI	GCGATG	1 cut(s)	4470
BtsI	GCAGTG	5 cut(s)	575, 4077, 4749, 5210, 6029
BveI	ACCTGC	1 cut(s)	5584
CaiI	CAGNNNCTG	2 cut(s)	729, 4373
CciI	TCATGA	3 cut(s)	4525, 5128, 6115
CfoI	GCGC	3 cut(s)	19, 5945, 5950
Cfr10I	RCCGGY	2 cut(s)	824, 6034
Cfr13I	GGNCC	8 cut(s)	300, 1214, 3551, 3869, 4325, 5781, 5914, 6062
ClaI	ATCGAT	1 cut(s)	1914
CseI	GACGC	3 cut(s)	667, 1670, 5047
CsiI	ACCWGGT	1 cut(s)	4048
CspCI	CAANNNNNGTGG	4 cut(s)	2173, 2208, 3930, 3965
DraI	TTTAAA	1 cut(s)	2496
DraIII	CACNNNGTG	1 cut(s)	3358
EaeI	YGGCCR	3 cut(s)	2487, 4305, 4404
Eam1104I	CTCTTC	6 cut(s)	2581, 2669, 2931, 3189, 3336, 4524
EarI	CTCTTC	6 cut(s)	2581, 2669, 2931, 3189, 3336, 4524
Ecl136II	GAGCTC	2 cut(s)	1613, 2225
Eco130I	CCWWGG	4 cut(s)	423, 2101, 5032, 5710
Eco147I	AGGCCT	3 cut(s)	1488, 5428, 5761
Eco24I	GRGCYC	4 cut(s)	188, 1615, 2227, 4004
Eco32I	GATATC	4 cut(s)	1305, 1908, 2706, 2835
Eco47I	GGWCC	8 cut(s)	300, 1214, 3551, 3869, 4325, 5781, 5914, 6062
Eco53kI	GAGCTC	2 cut(s)	1613, 2225
Eco81I	CCTNAGG	2 cut(s)	2175, 4356
Eco88I	CYCGRG	2 cut(s)	2553, 3221
Eco91I	GGTNACC	1 cut(s)	3480
EcoICRI	GAGCTC	2 cut(s)	1613, 2225
EcoO65I	GGTNACC	1 cut(s)	3480
EcoRI	GAATTC	3 cut(s)	3586, 3737, 6111
EcoRII	CCWGG	7 cut(s)	1271, 2116, 2151, 2500, 4048, 4318, 5508
EcoRV	GATATC	4 cut(s)	1305, 1908, 2706, 2835
EcoT14I	CCWWGG	4 cut(s)	423, 2101, 5032, 5710
EcoT22I	ATGCAT	1 cut(s)	3134
EcoT38I	GRGCYC	4 cut(s)	188, 1615, 2227, 4004
ErhI	CCWWGG	4 cut(s)	423, 2101, 5032, 5710
Esp3I	CGTCTC	1 cut(s)	4868
FalI	AAGNNNNNCTT	8 cut(s)	130, 162, 919, 951, 2246, 2278, 3390, 3422
FaqI	GGGAC	3 cut(s)	3716, 5050, 5794
FauI	CCCGC	1 cut(s)	5748
FauNDI	CATATG	2 cut(s)	2289, 5865
FbaI	TGATCA	6 cut(s)	613, 1432, 4500, 4513, 4522, 4735
FblI	GTMKAC	2 cut(s)	903, 2877
FriOI	GRGCYC	4 cut(s)	188, 1615, 2227, 4004
GlaI	GCGC	3 cut(s)	18, 5944, 5949
GsaI	CCCAGC	3 cut(s)	5505, 5559, 5738
GsuI	CTGGAG	5 cut(s)	225, 804, 1265, 2107, 4341
HaeII	RGCGCY	1 cut(s)	5951
HaeIII	GGCC	6 cut(s)	1488, 2489, 4307, 4406, 5428, 5761
HapII	CCGG	6 cut(s)	108, 825, 3734, 3765, 6035, 6060
HgaI	GACGC	3 cut(s)	667, 1670, 5047
HhaI	GCGC	3 cut(s)	19, 5945, 5950
Hin1I	GRCGYC	1 cut(s)	659
Hin6I	GCGC	3 cut(s)	17, 5943, 5948
HinP1I	GCGC	3 cut(s)	17, 5943, 5948
HincII	GTYRAC	4 cut(s)	1632, 2285, 2878, 5600
HindII	GTYRAC	4 cut(s)	1632, 2285, 2878, 5600
HindIII	AAGCTT	2 cut(s)	1559, 4440
HpaII	CCGG	6 cut(s)	108, 825, 3734, 3765, 6035, 6060
HpyCH4IV	ACGT	5 cut(s)	119, 2981, 4867, 4877, 5995
HpySE526I	ACGT	5 cut(s)	119, 2981, 4867, 4877, 5995
Hsp92I	GRCGYC	1 cut(s)	659
HspAI	GCGC	3 cut(s)	17, 5943, 5948
KpnI	GGTACC	1 cut(s)	5685
KroI	GCCGGC	1 cut(s)	6034
KroNI	GCCGGC	1 cut(s)	6036
Ksp22I	TGATCA	6 cut(s)	613, 1432, 4500, 4513, 4522, 4735
LguI	GCTCTTC	2 cut(s)	2581, 3336
MabI	ACCWGGT	1 cut(s)	4048
MaeII	ACGT	5 cut(s)	119, 2981, 4867, 4877, 5995
MbiI	CCGCTC	2 cut(s)	3836, 4176
MfeI	CAATTG	4 cut(s)	1497, 2923, 3368, 5586
MhlI	GDGCHC	9 cut(s)	188, 1396, 1615, 2071, 2227, 3574, 4004, 4425, 5554
MlsI	TGGCCA	2 cut(s)	4307, 4406
MluNI	TGGCCA	2 cut(s)	4307, 4406
Mox20I	TGGCCA	2 cut(s)	4307, 4406
Mph1103I	ATGCAT	1 cut(s)	3134
MroNI	GCCGGC	1 cut(s)	6034
MroXI	GAANNNNTTC	7 cut(s)	145, 694, 859, 1488, 2096, 2763, 3283
MscI	TGGCCA	2 cut(s)	4307, 4406
MslI	CAYNNNNRTG	4 cut(s)	639, 844, 2292, 4313
Msp20I	TGGCCA	2 cut(s)	4307, 4406
MspA1I	CMGCKG	4 cut(s)	3394, 4256, 4370, 4796
MspCI	CTTAAG	2 cut(s)	136, 3407
MspI	CCGG	6 cut(s)	108, 825, 3734, 3765, 6035, 6060
MteI	GCGCNGCGC	1 cut(s)	5946
MunI	CAATTG	4 cut(s)	1497, 2923, 3368, 5586
MvaI	CCWGG	7 cut(s)	1273, 2118, 2153, 2502, 4050, 4320, 5510
NaeI	GCCGGC	1 cut(s)	6036
NciI	CCSGG	3 cut(s)	3734, 3765, 6060
NcoI	CCATGG	1 cut(s)	2101
NdeI	CATATG	2 cut(s)	2289, 5865
NgoMIV	GCCGGC	1 cut(s)	6034
NheI	GCTAGC	1 cut(s)	5471
NmeAIII	GCCGAG	2 cut(s)	809, 2465
NmuCI	GTSAC	7 cut(s)	1221, 1865, 2633, 3480, 3535, 3757, 6027
NsiI	ATGCAT	1 cut(s)	3134
NspI	RCATGY	8 cut(s)	533, 638, 876, 3925, 4686, 5539, 5645, 5924
NspV	TTCGAA	1 cut(s)	1509
PaeI	GCATGC	1 cut(s)	3925
PaeR7I	CTCGAG	2 cut(s)	2553, 3221
PagI	TCATGA	3 cut(s)	4525, 5128, 6115
PceI	AGGCCT	3 cut(s)	1488, 5428, 5761
PciI	ACATGT	3 cut(s)	634, 872, 5920
PciSI	GCTCTTC	2 cut(s)	2581, 3336
PcsI	WCGNNNNNNNCGW	1 cut(s)	1813
PdiI	GCCGGC	1 cut(s)	6036
PdmI	GAANNNNTTC	7 cut(s)	145, 694, 859, 1488, 2096, 2763, 3283
PflMI	CCANNNNNTGG	2 cut(s)	3047, 4303
PfoI	TCCNGGA	2 cut(s)	2151, 3732
PscI	ACATGT	3 cut(s)	634, 872, 5920
PshAI	GACNNNNGTC	2 cut(s)	1219, 4350
PshBI	ATTAAT	1 cut(s)	374
Psp124BI	GAGCTC	2 cut(s)	1615, 2227
Psp1406I	AACGTT	2 cut(s)	2981, 5995
Psp6I	CCWGG	7 cut(s)	1271, 2116, 2151, 2500, 4048, 4318, 5508
PspEI	GGTNACC	1 cut(s)	3480
PspFI	CCCAGC	3 cut(s)	5501, 5555, 5734
PspGI	CCWGG	7 cut(s)	1271, 2116, 2151, 2500, 4048, 4318, 5508
PspPI	GGNCC	8 cut(s)	300, 1214, 3551, 3869, 4325, 5781, 5914, 6062
PspXI	VCTCGAGB	1 cut(s)	2553
PstI	CTGCAG	6 cut(s)	1000, 3016, 4776, 4795, 5470, 5481
PstNI	CAGNNNCTG	2 cut(s)	729, 4373
PvuII	CAGCTG	4 cut(s)	3394, 4256, 4370, 4796
RseI	CAYNNNNRTG	4 cut(s)	639, 844, 2292, 4313
SacI	GAGCTC	2 cut(s)	1615, 2227
SalI	GTCGAC	1 cut(s)	2876
SapI	GCTCTTC	2 cut(s)	2581, 3336
Sau96I	GGNCC	8 cut(s)	300, 1214, 3551, 3869, 4325, 5781, 5914, 6062
ScaI	AGTACT	3 cut(s)	103, 196, 1286
SduI	GDGCHC	9 cut(s)	188, 1396, 1615, 2071, 2227, 3574, 4004, 4425, 5554
SexAI	ACCWGGT	1 cut(s)	4048
SfcI	CTRYAG	8 cut(s)	996, 1296, 3012, 4161, 4772, 4791, 5466, 5477
Sfr274I	CTCGAG	2 cut(s)	2553, 3221
SfuI	TTCGAA	1 cut(s)	1509
SinI	GGWCC	8 cut(s)	300, 1214, 3551, 3869, 4325, 5781, 5914, 6062
SlaI	CTCGAG	2 cut(s)	2553, 3221
SmiMI	CAYNNNNRTG	4 cut(s)	639, 844, 2292, 4313
SmlI	CTYRAG	7 cut(s)	136, 215, 2553, 3179, 3221, 3380, 3407
SmoI	CTYRAG	7 cut(s)	136, 215, 2553, 3179, 3221, 3380, 3407
SphI	GCATGC	1 cut(s)	3925
SseBI	AGGCCT	3 cut(s)	1488, 5428, 5761
SsiI	CCGC	7 cut(s)	2908, 2965, 3836, 4176, 4910, 5352, 5741
SspI	AATATT	2 cut(s)	2029, 2357
SstI	GAGCTC	2 cut(s)	1615, 2227
StuI	AGGCCT	3 cut(s)	1488, 5428, 5761
StyI	CCWWGG	4 cut(s)	423, 2101, 5032, 5710
TaiI	ACGT	5 cut(s)	122, 2984, 4870, 4880, 5998
TatI	WGTACW	5 cut(s)	101, 194, 848, 1284, 4765
TauI	GCSGC	2 cut(s)	2911, 4912
TseFI	GTSAC	7 cut(s)	1221, 1865, 2633, 3480, 3535, 3757, 6027
Tsp45I	GTSAC	7 cut(s)	1221, 1865, 2633, 3480, 3535, 3757, 6027
TspGWI	ACGGA	4 cut(s)	2470, 4016, 5640, 5761
Van91I	CCANNNNNTGG	2 cut(s)	3047, 4303
Vha464I	CTTAAG	2 cut(s)	136, 3407
VneI	GTGCAC	3 cut(s)	2067, 3570, 5550
VpaK11BI	GGWCC	8 cut(s)	300, 1214, 3551, 3869, 4325, 5781, 5914, 6062
VspI	ATTAAT	1 cut(s)	374
XbaI	TCTAGA	2 cut(s)	149, 1117
XceI	RCATGY	8 cut(s)	533, 638, 876, 3925, 4686, 5539, 5645, 5924
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2313
XhoI	CTCGAG	2 cut(s)	2553, 3221
XmiI	GTMKAC	2 cut(s)	903, 2877
XmnI	GAANNNNTTC	7 cut(s)	145, 694, 859, 1488, 2096, 2763, 3283
ZrmI	AGTACT	3 cut(s)	103, 196, 1286
Zsp2I	ATGCAT	1 cut(s)	3134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.