helicase protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 480, 1901 |
| AarI | CACCTGC | 4 cut(s) | 832, 7303, 7309, 7315 |
| Acc36I | ACCTGC | 6 cut(s) | 832, 5306, 7269, 7303, 7309, 7315 |
| Acc65I | GGTACC | 1 cut(s) | 1612 |
| AccB1I | GGYRCC | 4 cut(s) | 1612, 1917, 2227, 3439 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 7226 |
| AccII | CGCG | 3 cut(s) | 2061, 3096, 3831 |
| AccIII | TCCGGA | 1 cut(s) | 4027 |
| AciI | CCGC | 8 cut(s) | 364, 570, 1092, 3831, 3929, 6032, 6715, 7394 |
| AcoI | YGGCCR | 3 cut(s) | 442, 4161, 7239 |
| AcyI | GRCGYC | 2 cut(s) | 1918, 4690 |
| AdeI | CACNNNGTG | 2 cut(s) | 1686, 5168 |
| AflII | CTTAAG | 5 cut(s) | 2492, 2960, 4772, 4952, 6908 |
| AflIII | ACRYGT | 2 cut(s) | 835, 3141 |
| AgeI | ACCGGT | 1 cut(s) | 3957 |
| AhlI | ACTAGT | 2 cut(s) | 4979, 6734 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 7070, 7102 |
| AleI | CACNNNNGTG | 1 cut(s) | 2076 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 2198, 2230, 3733, 3765 |
| Alw21I | GWGCWC | 5 cut(s) | 520, 2859, 6247, 6589, 7780 |
| Alw44I | GTGCAC | 2 cut(s) | 2855, 6243 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 71, 1196, 3899, 4148, 7180, 7226 |
| Ama87I | CYCGRG | 3 cut(s) | 414, 1766, 4043 |
| Aor13HI | TCCGGA | 1 cut(s) | 4027 |
| ApaI | GGGCCC | 1 cut(s) | 7600 |
| ApaLI | GTGCAC | 2 cut(s) | 2855, 6243 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 3093, 3125, 5566, 5598, 5686, 5718 |
| AseI | ATTAAT | 1 cut(s) | 1736 |
| AsiGI | ACCGGT | 1 cut(s) | 3957 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 3143, 3522, 4170, 5100 |
| Asp718I | GGTACC | 1 cut(s) | 1612 |
| AspLEI | GCGC | 3 cut(s) | 1920, 3096, 5293 |
| AspS9I | GGNCC | 7 cut(s) | 884, 1062, 1894, 7596, 7597, 7726, 7805 |
| AsuC2I | CCSGG | 1 cut(s) | 7569 |
| AsuII | TTCGAA | 1 cut(s) | 2370 |
| AvaI | CYCGRG | 3 cut(s) | 414, 1766, 4043 |
| AvaII | GGWCC | 4 cut(s) | 884, 1062, 7726, 7805 |
| AxyI | CCTNAGG | 2 cut(s) | 1884, 3564 |
| BaeGI | GKGCMC | 5 cut(s) | 2859, 3442, 6247, 7453, 7600 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 824, 857 |
| BalI | TGGCCA | 1 cut(s) | 7241 |
| BanI | GGYRCC | 4 cut(s) | 1612, 1917, 2227, 3439 |
| BanII | GRGCYC | 3 cut(s) | 146, 4915, 7600 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 6060, 6092 |
| BauI | CACGAG | 3 cut(s) | 3189, 4914, 7779 |
| BbsI | GAAGAC | 2 cut(s) | 5381, 6791 |
| Bbv12I | GWGCWC | 5 cut(s) | 520, 2859, 6247, 6589, 7780 |
| BbvCI | CCTCAGC | 2 cut(s) | 7092, 7338 |
| BceAI | ACGGC | 2 cut(s) | 429, 1025 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4207, 4241 |
| BciVI | GTATCC | 2 cut(s) | 76, 5400 |
| BclI | TGATCA | 4 cut(s) | 2172, 2563, 2839, 6298 |
| BcnI | CCSGG | 1 cut(s) | 7569 |
| BcuI | ACTAGT | 2 cut(s) | 4979, 6734 |
| BfmI | CTRYAG | 9 cut(s) | 888, 996, 1287, 5115, 5313, 6113, 6501, 6546, 7262 |
| BfoI | RGCGCY | 1 cut(s) | 1921 |
| BfrI | CTTAAG | 5 cut(s) | 2492, 2960, 4772, 4952, 6908 |
| BfuAI | ACCTGC | 6 cut(s) | 832, 5306, 7269, 7303, 7309, 7315 |
| BfuI | GTATCC | 2 cut(s) | 76, 5400 |
| BglII | AGATCT | 1 cut(s) | 7004 |
| BmcAI | AGTACT | 5 cut(s) | 61, 2325, 2490, 2711, 2991 |
| Bme18I | GGWCC | 4 cut(s) | 884, 1062, 7726, 7805 |
| BmeT110I | CYCGRG | 3 cut(s) | 414, 1766, 4043 |
| BmgT120I | GGNCC | 7 cut(s) | 884, 1062, 1894, 7596, 7597, 7726, 7805 |
| BmrI | ACTGGG | 3 cut(s) | 3298, 5406, 7784 |
| BmuI | ACTGGG | 3 cut(s) | 3298, 5406, 7784 |
| BoxI | GACNNNNGTC | 1 cut(s) | 4821 |
| BpiI | GAAGAC | 2 cut(s) | 5381, 6791 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 326, 358, 1133, 1165, 3536, 3568 |
| Bpu10I | CCTNAGC | 4 cut(s) | 343, 2573, 7092, 7338 |
| Bpu14I | TTCGAA | 1 cut(s) | 2370 |
| BpuEI | CTTGAG | 7 cut(s) | 456, 682, 4847, 4856, 4957, 5921, 6816 |
| BpuMI | CCSGG | 1 cut(s) | 7569 |
| BsaAI | YACGTR | 3 cut(s) | 2273, 2456, 5644 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2157 |
| BsaHI | GRCGYC | 2 cut(s) | 1918, 4690 |
| BsaI | GGTCTC | 2 cut(s) | 5141, 6023 |
| BsaWI | WCCGGW | 4 cut(s) | 3957, 4027, 5629, 7101 |
| Bse118I | RCCGGY | 2 cut(s) | 1920, 3957 |
| Bse21I | CCTNAGG | 2 cut(s) | 1884, 3564 |
| Bse3DI | GCAATG | 3 cut(s) | 580, 1049, 1662 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2157 |
| BseAI | TCCGGA | 1 cut(s) | 4027 |
| BseJI | GATNNNNATC | 1 cut(s) | 2157 |
| BseMI | GCAATG | 3 cut(s) | 580, 1049, 1662 |
| BseSI | GKGCMC | 5 cut(s) | 2859, 3442, 6247, 7453, 7600 |
| BseYI | CCCAGC | 4 cut(s) | 3487, 7286, 7381, 7453 |
| BsgI | GTGCAG | 8 cut(s) | 1006, 2459, 5436, 6756, 6798, 7166, 7281, 7287 |
| Bsh1236I | CGCG | 3 cut(s) | 2061, 3096, 3831 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2767 |
| BshNI | GGYRCC | 4 cut(s) | 1612, 1917, 2227, 3439 |
| BshTI | ACCGGT | 1 cut(s) | 3957 |
| BsiEI | CGRYCG | 1 cut(s) | 2767 |
| BsiHKAI | GWGCWC | 5 cut(s) | 520, 2859, 6247, 6589, 7780 |
| BsiHKCI | CYCGRG | 3 cut(s) | 414, 1766, 4043 |
| BsiSI | CCGG | 7 cut(s) | 1921, 3958, 4028, 5630, 7102, 7250, 7569 |
| BslFI | GGGAC | 6 cut(s) | 676, 698, 1428, 5074, 5114, 7712 |
| BsmBI | CGTCTC | 1 cut(s) | 1048 |
| BsmFI | GGGAC | 6 cut(s) | 676, 698, 1428, 5074, 5114, 7712 |
| BsmI | GAATGC | 3 cut(s) | 1867, 2089, 4973 |
| Bso31I | GGTCTC | 2 cut(s) | 5141, 6023 |
| BsoBI | CYCGRG | 3 cut(s) | 414, 1766, 4043 |
| Bsp119I | TTCGAA | 1 cut(s) | 2370 |
| Bsp120I | GGGCCC | 1 cut(s) | 7596 |
| Bsp13I | TCCGGA | 1 cut(s) | 4027 |
| Bsp1407I | TGTACA | 1 cut(s) | 2680 |
| Bsp19I | CCATGG | 1 cut(s) | 3472 |
| BspACI | CCGC | 8 cut(s) | 364, 570, 1092, 3831, 3929, 6032, 6715, 7394 |
| BspEI | TCCGGA | 1 cut(s) | 4027 |
| BspFNI | CGCG | 3 cut(s) | 2061, 3096, 3831 |
| BspHI | TCATGA | 4 cut(s) | 492, 5005, 5800, 6916 |
| BspMAI | CTGCAG | 4 cut(s) | 1000, 5317, 6117, 7266 |
| BspMI | ACCTGC | 6 cut(s) | 832, 5306, 7269, 7303, 7309, 7315 |
| BspQI | GCTCTTC | 2 cut(s) | 2492, 7638 |
| BspT104I | TTCGAA | 1 cut(s) | 2370 |
| BspT107I | GGYRCC | 4 cut(s) | 1612, 1917, 2227, 3439 |
| BspTI | CTTAAG | 5 cut(s) | 2492, 2960, 4772, 4952, 6908 |
| BspTNI | GGTCTC | 2 cut(s) | 5141, 6023 |
| BsrDI | GCAATG | 3 cut(s) | 580, 1049, 1662 |
| BsrFI | RCCGGY | 2 cut(s) | 1920, 3957 |
| BsrGI | TGTACA | 1 cut(s) | 2680 |
| BssAI | RCCGGY | 2 cut(s) | 1920, 3957 |
| BssNI | GRCGYC | 2 cut(s) | 1918, 4690 |
| BssSI | CACGAG | 3 cut(s) | 3189, 4914, 7779 |
| BssT1I | CCWWGG | 6 cut(s) | 847, 3472, 4958, 6345, 7236, 7429 |
| Bst2BI | CACGAG | 3 cut(s) | 3189, 4914, 7779 |
| Bst6I | CTCTTC | 3 cut(s) | 1360, 2492, 7638 |
| BstACI | GRCGYC | 2 cut(s) | 1918, 4690 |
| BstAFI | CTTAAG | 5 cut(s) | 2492, 2960, 4772, 4952, 6908 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 7133 |
| BstAUI | TGTACA | 1 cut(s) | 2680 |
| BstBAI | YACGTR | 3 cut(s) | 2273, 2456, 5644 |
| BstBI | TTCGAA | 1 cut(s) | 2370 |
| BstDSI | CCRYGG | 1 cut(s) | 3472 |
| BstEII | GGTNACC | 1 cut(s) | 5863 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 851 |
| BstFNI | CGCG | 3 cut(s) | 2061, 3096, 3831 |
| BstH2I | RGCGCY | 1 cut(s) | 1921 |
| BstHHI | GCGC | 3 cut(s) | 1920, 3096, 5293 |
| BstMCI | CGRYCG | 1 cut(s) | 2767 |
| BstNSI | RCATGY | 8 cut(s) | 839, 1101, 1323, 3145, 4042, 4517, 5542, 6085 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 4821 |
| BstPI | GGTNACC | 1 cut(s) | 5863 |
| BstSFI | CTRYAG | 9 cut(s) | 888, 996, 1287, 5115, 5313, 6113, 6501, 6546, 7262 |
| BstSLI | GKGCMC | 5 cut(s) | 2859, 3442, 6247, 7453, 7600 |
| BstSNI | TACGTA | 2 cut(s) | 2273, 2456 |
| BstUI | CGCG | 3 cut(s) | 2061, 3096, 3831 |
| BstV2I | GAAGAC | 2 cut(s) | 5381, 6791 |
| BstX2I | RGATCY | 7 cut(s) | 437, 5737, 6223, 6827, 7004, 7117, 7621 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 3011, 6220, 6266 |
| BstYI | RGATCY | 7 cut(s) | 437, 5737, 6223, 6827, 7004, 7117, 7621 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1884, 3564 |
| BsuI | GTATCC | 2 cut(s) | 76, 5400 |
| BtgI | CCRYGG | 1 cut(s) | 3472 |
| BtgZI | GCGATG | 1 cut(s) | 762 |
| BtsI | GCAGTG | 3 cut(s) | 627, 2590, 6839 |
| BveI | ACCTGC | 6 cut(s) | 832, 5306, 7269, 7303, 7309, 7315 |
| CaiI | CAGNNNCTG | 6 cut(s) | 71, 1196, 3899, 4148, 7180, 7226 |
| CciI | TCATGA | 4 cut(s) | 492, 5005, 5800, 6916 |
| CfoI | GCGC | 3 cut(s) | 1920, 3096, 5293 |
| Cfr10I | RCCGGY | 2 cut(s) | 1920, 3957 |
| Cfr13I | GGNCC | 7 cut(s) | 884, 1062, 1894, 7596, 7597, 7726, 7805 |
| CseI | GACGC | 4 cut(s) | 3053, 3085, 4679, 6222 |
| CsiI | ACCWGGT | 2 cut(s) | 1674, 7696 |
| CspAI | ACCGGT | 1 cut(s) | 3957 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 562, 597, 2911, 2946 |
| DinI | GGCGCC | 1 cut(s) | 1919 |
| DraIII | CACNNNGTG | 2 cut(s) | 1686, 5168 |
| EaeI | YGGCCR | 3 cut(s) | 442, 4161, 7239 |
| Eam1104I | CTCTTC | 3 cut(s) | 1360, 2492, 7638 |
| EarI | CTCTTC | 3 cut(s) | 1360, 2492, 7638 |
| EciI | GGCGGA | 1 cut(s) | 6021 |
| Eco105I | TACGTA | 2 cut(s) | 2273, 2456 |
| Eco130I | CCWWGG | 6 cut(s) | 847, 3472, 4958, 6345, 7236, 7429 |
| Eco147I | AGGCCT | 2 cut(s) | 709, 4841 |
| Eco24I | GRGCYC | 3 cut(s) | 146, 4915, 7600 |
| Eco31I | GGTCTC | 2 cut(s) | 5141, 6023 |
| Eco32I | GATATC | 3 cut(s) | 2688, 3291, 4242 |
| Eco47I | GGWCC | 4 cut(s) | 884, 1062, 7726, 7805 |
| Eco81I | CCTNAGG | 2 cut(s) | 1884, 3564 |
| Eco88I | CYCGRG | 3 cut(s) | 414, 1766, 4043 |
| Eco91I | GGTNACC | 1 cut(s) | 5863 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 851 |
| EcoO109I | RGGNCCY | 3 cut(s) | 884, 1894, 7596 |
| EcoO65I | GGTNACC | 1 cut(s) | 5863 |
| EcoRI | GAATTC | 3 cut(s) | 4468, 4593, 7159 |
| EcoRV | GATATC | 3 cut(s) | 2688, 3291, 4242 |
| EcoT14I | CCWWGG | 6 cut(s) | 847, 3472, 4958, 6345, 7236, 7429 |
| EcoT22I | ATGCAT | 3 cut(s) | 6672, 7115, 7200 |
| EcoT38I | GRGCYC | 3 cut(s) | 146, 4915, 7600 |
| EgeI | GGCGCC | 1 cut(s) | 1919 |
| EheI | GGCGCC | 1 cut(s) | 1919 |
| ErhI | CCWWGG | 6 cut(s) | 847, 3472, 4958, 6345, 7236, 7429 |
| Esp3I | CGTCTC | 1 cut(s) | 1048 |
| FaqI | GGGAC | 6 cut(s) | 676, 698, 1428, 5074, 5114, 7712 |
| FauI | CCCGC | 1 cut(s) | 3824 |
| FauNDI | CATATG | 1 cut(s) | 6903 |
| FbaI | TGATCA | 4 cut(s) | 2172, 2563, 2839, 6298 |
| FriOI | GRGCYC | 3 cut(s) | 146, 4915, 7600 |
| GlaI | GCGC | 3 cut(s) | 1919, 3095, 5292 |
| GsaI | CCCAGC | 4 cut(s) | 3491, 7290, 7385, 7457 |
| HaeII | RGCGCY | 1 cut(s) | 1921 |
| HapII | CCGG | 7 cut(s) | 1921, 3958, 4028, 5630, 7102, 7250, 7569 |
| HgaI | GACGC | 4 cut(s) | 3053, 3085, 4679, 6222 |
| HhaI | GCGC | 3 cut(s) | 1920, 3096, 5293 |
| Hin1I | GRCGYC | 2 cut(s) | 1918, 4690 |
| Hin6I | GCGC | 3 cut(s) | 1918, 3094, 5291 |
| HinP1I | GCGC | 3 cut(s) | 1918, 3094, 5291 |
| HincII | GTYRAC | 4 cut(s) | 261, 770, 3963, 4285 |
| HindII | GTYRAC | 4 cut(s) | 261, 770, 3963, 4285 |
| HindIII | AAGCTT | 7 cut(s) | 474, 509, 726, 1256, 2936, 3027, 4769 |
| HpaII | CCGG | 7 cut(s) | 1921, 3958, 4028, 5630, 7102, 7250, 7569 |
| Hpy99I | CGWCG | 1 cut(s) | 3101 |
| Hsp92I | GRCGYC | 2 cut(s) | 1918, 4690 |
| HspAI | GCGC | 3 cut(s) | 1918, 3094, 5291 |
| KasI | GGCGCC | 1 cut(s) | 1917 |
| Kpn2I | TCCGGA | 1 cut(s) | 4027 |
| KpnI | GGTACC | 1 cut(s) | 1616 |
| KroI | GCCGGC | 1 cut(s) | 1920 |
| KroNI | GCCGGC | 1 cut(s) | 1922 |
| Ksp22I | TGATCA | 4 cut(s) | 2172, 2563, 2839, 6298 |
| LguI | GCTCTTC | 2 cut(s) | 2492, 7638 |
| MabI | ACCWGGT | 2 cut(s) | 1674, 7696 |
| MfeI | CAATTG | 3 cut(s) | 3009, 4330, 4719 |
| MflI | RGATCY | 7 cut(s) | 437, 5737, 6223, 6827, 7004, 7117, 7621 |
| MlsI | TGGCCA | 1 cut(s) | 7241 |
| MluNI | TGGCCA | 1 cut(s) | 7241 |
| Mly113I | GGCGCC | 1 cut(s) | 1918 |
| MlyI | GAGTC | 8 cut(s) | 189, 256, 300, 1511, 2642, 4055, 5596, 6621 |
| Mox20I | TGGCCA | 1 cut(s) | 7241 |
| Mph1103I | ATGCAT | 3 cut(s) | 6672, 7115, 7200 |
| MroI | TCCGGA | 1 cut(s) | 4027 |
| MroNI | GCCGGC | 1 cut(s) | 1920 |
| MroXI | GAANNNNTTC | 4 cut(s) | 3143, 3522, 4170, 5100 |
| MscI | TGGCCA | 1 cut(s) | 7241 |
| MslI | CAYNNNNRTG | 3 cut(s) | 2076, 5612, 6921 |
| Msp20I | TGGCCA | 1 cut(s) | 7241 |
| MspA1I | CMGCKG | 2 cut(s) | 6605, 7180 |
| MspCI | CTTAAG | 5 cut(s) | 2492, 2960, 4772, 4952, 6908 |
| MspI | CCGG | 7 cut(s) | 1921, 3958, 4028, 5630, 7102, 7250, 7569 |
| MunI | CAATTG | 3 cut(s) | 3009, 4330, 4719 |
| Mva1269I | GAATGC | 3 cut(s) | 1867, 2089, 4973 |
| MvnI | CGCG | 3 cut(s) | 2061, 3096, 3831 |
| NaeI | GCCGGC | 1 cut(s) | 1922 |
| NarI | GGCGCC | 1 cut(s) | 1918 |
| NciI | CCSGG | 1 cut(s) | 7569 |
| NcoI | CCATGG | 1 cut(s) | 3472 |
| NdeI | CATATG | 1 cut(s) | 6903 |
| NgoMIV | GCCGGC | 1 cut(s) | 1920 |
| NsiI | ATGCAT | 3 cut(s) | 6672, 7115, 7200 |
| NspI | RCATGY | 8 cut(s) | 839, 1101, 1323, 3145, 4042, 4517, 5542, 6085 |
| NspV | TTCGAA | 1 cut(s) | 2370 |
| OliI | CACNNNNGTG | 1 cut(s) | 2076 |
| PaeR7I | CTCGAG | 2 cut(s) | 414, 4043 |
| PagI | TCATGA | 4 cut(s) | 492, 5005, 5800, 6916 |
| PaqCI | CACCTGC | 4 cut(s) | 832, 7303, 7309, 7315 |
| PasI | CCCWGGG | 1 cut(s) | 6820 |
| PceI | AGGCCT | 2 cut(s) | 709, 4841 |
| PciI | ACATGT | 2 cut(s) | 835, 3141 |
| PciSI | GCTCTTC | 2 cut(s) | 2492, 7638 |
| PctI | GAATGC | 3 cut(s) | 1867, 2089, 4973 |
| PdiI | GCCGGC | 1 cut(s) | 1922 |
| PdmI | GAANNNNTTC | 4 cut(s) | 3143, 3522, 4170, 5100 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 7226 |
| PfoI | TCCNGGA | 2 cut(s) | 3540, 3898 |
| PinAI | ACCGGT | 1 cut(s) | 3957 |
| Ple19I | CGATCG | 1 cut(s) | 2767 |
| PleI | GAGTC | 8 cut(s) | 189, 256, 299, 1510, 2642, 4054, 5595, 6620 |
| PluTI | GGCGCC | 1 cut(s) | 1921 |
| PpsI | GAGTC | 8 cut(s) | 189, 256, 299, 1510, 2642, 4054, 5595, 6620 |
| Ppu21I | YACGTR | 3 cut(s) | 2273, 2456, 5644 |
| PpuMI | RGGWCCY | 1 cut(s) | 884 |
| PscI | ACATGT | 2 cut(s) | 835, 3141 |
| PshAI | GACNNNNGTC | 1 cut(s) | 4821 |
| PshBI | ATTAAT | 1 cut(s) | 1736 |
| PsiI | TTATAA | 2 cut(s) | 480, 1901 |
| Psp5II | RGGWCCY | 1 cut(s) | 884 |
| PspEI | GGTNACC | 1 cut(s) | 5863 |
| PspFI | CCCAGC | 4 cut(s) | 3487, 7286, 7381, 7453 |
| PspOMI | GGGCCC | 1 cut(s) | 7596 |
| PspPI | GGNCC | 7 cut(s) | 884, 1062, 1894, 7596, 7597, 7726, 7805 |
| PspPPI | RGGWCCY | 1 cut(s) | 884 |
| PspXI | VCTCGAGB | 1 cut(s) | 4043 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 52, 84 |
| PstI | CTGCAG | 4 cut(s) | 1000, 5317, 6117, 7266 |
| PstNI | CAGNNNCTG | 6 cut(s) | 71, 1196, 3899, 4148, 7180, 7226 |
| PsuI | RGATCY | 7 cut(s) | 437, 5737, 6223, 6827, 7004, 7117, 7621 |
| PvuI | CGATCG | 1 cut(s) | 2767 |
| PvuII | CAGCTG | 2 cut(s) | 6605, 7180 |
| RseI | CAYNNNNRTG | 3 cut(s) | 2076, 5612, 6921 |
| SapI | GCTCTTC | 2 cut(s) | 2492, 7638 |
| Sau96I | GGNCC | 7 cut(s) | 884, 1062, 1894, 7596, 7597, 7726, 7805 |
| ScaI | AGTACT | 5 cut(s) | 61, 2325, 2490, 2711, 2991 |
| SchI | GAGTC | 8 cut(s) | 189, 256, 300, 1511, 2642, 4055, 5596, 6621 |
| SexAI | ACCWGGT | 2 cut(s) | 1674, 7696 |
| SfcI | CTRYAG | 9 cut(s) | 888, 996, 1287, 5115, 5313, 6113, 6501, 6546, 7262 |
| SfoI | GGCGCC | 1 cut(s) | 1919 |
| Sfr274I | CTCGAG | 2 cut(s) | 414, 4043 |
| SfuI | TTCGAA | 1 cut(s) | 2370 |
| SinI | GGWCC | 4 cut(s) | 884, 1062, 7726, 7805 |
| SlaI | CTCGAG | 2 cut(s) | 414, 4043 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 2076, 5612, 6921 |
| SnaBI | TACGTA | 2 cut(s) | 2273, 2456 |
| SpeI | ACTAGT | 2 cut(s) | 4979, 6734 |
| SseBI | AGGCCT | 2 cut(s) | 709, 4841 |
| SsiI | CCGC | 8 cut(s) | 364, 570, 1092, 3831, 3929, 6032, 6715, 7394 |
| SspDI | GGCGCC | 1 cut(s) | 1917 |
| SspI | AATATT | 3 cut(s) | 3746, 4556, 5933 |
| StuI | AGGCCT | 2 cut(s) | 709, 4841 |
| StyI | CCWWGG | 6 cut(s) | 847, 3472, 4958, 6345, 7236, 7429 |
| TaqII | GACCGA | 1 cut(s) | 7668 |
| TauI | GCSGC | 4 cut(s) | 573, 3932, 6718, 7396 |
| TspGWI | ACGGA | 3 cut(s) | 1197, 3639, 5419 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 7226 |
| Vha464I | CTTAAG | 5 cut(s) | 2492, 2960, 4772, 4952, 6908 |
| VneI | GTGCAC | 2 cut(s) | 2855, 6243 |
| VpaK11BI | GGWCC | 4 cut(s) | 884, 1062, 7726, 7805 |
| VspI | ATTAAT | 1 cut(s) | 1736 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 851 |
| XbaI | TCTAGA | 3 cut(s) | 1399, 2038, 4693 |
| XceI | RCATGY | 8 cut(s) | 839, 1101, 1323, 3145, 4042, 4517, 5542, 6085 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 3011, 5923 |
| XhoI | CTCGAG | 2 cut(s) | 414, 4043 |
| XmnI | GAANNNNTTC | 4 cut(s) | 3143, 3522, 4170, 5100 |
| ZrmI | AGTACT | 5 cut(s) | 61, 2325, 2490, 2711, 2991 |
| Zsp2I | ATGCAT | 3 cut(s) | 6672, 7115, 7200 |