Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001065

Physical Location & Seq

Genomic Coordinates Forward (+)

37125761 .. 37129809

Gene Structure 4049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0313900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCTAATGAGGCAACTCAGACCTAATGTTTCTGAGCTGGAGCAGAAGCTTTCAGAACAATCCAAGACTCTCTTACATCTTCAACAAAAGGTTGATGATTTGGCATCAAAGGTCAGGTTTCGGTCGATCACCCCAATCTCCTTTTCAAGCATAGTTGTTGCCCTGTTTTGGCATAAGTCGAGTGGGATAGAGCCTATACTTAATATCCAGCGGGAGAGGAGAGGCAGCAGCCAATATACCCAAGAAGATATTGATCAGTTGCGAAATGAGTTGGAGAAGTTTGTGGTGAAGAGCAGCTCTGCCGAGAGAAGACACAACAGTGATAACGAAAATCTGTCGACTGATTGCATATCATACAAGGGTGTTCCACCGTTGCGCAAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006342 GO:0006344 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

Chromo Helicase_C SNF2_N

Protein Analysis

128

Amino Acids

14.86

Weight (kDa)

9.41

Isoelectric Point (pI)

67.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_NMP1	PF06694	8 - 40	6.5e-07	Plant nuclear matrix protein 1 (NMP1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08060 AT1G08060 AT1G08060
fragaria_vesca	FvH4_3g31740 FvH4_3g31740 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540
malus_domestica	MD03G1121600.v1.1 MD11G1139900.v1.1 MD11G1140000.v1.1
prunus_persica	Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104700_v2.0.a1
pyrus_communis	pycom11g11560 pycom11g11580
rosa_chinensis	RchiOBHm_Chr4g0405411 RchiOBHm_Chr5g0058411
rosa_laevigata	RLG00000008844 RLG00000035218
rosa_multiflora	Rmu_sc0000367.1_g000115 Rmu_sc0000575.1_g000013
rosa_roxburghii	Rroxscaffold_1G00022120 Rroxscaffold_1G00022140 Rroxscaffold_5G00349880
rosa_rugosa	Rorug04G0059700 Rorug04G0059800 Rorug04G0059900 Rorug04G0060000 Rorug05G0313800 Rorug05G0313800 Rorug05G0313900 Rorug05G0314000 Rorug05G0314100
rosa_samantha	Rh4AG131700 Rh4BG126600 Rh4CG139100 Rh4DG125700 Rh5AG381300 Rh5BG392800 Rh5CG416900 Rh5DG408000
rosa_wichuraiana	Rw4G010660 Rw5G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	338
AciI	CCGC	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	83, 147
AjuI	GAANNNNNNNTTGG	2 cut(s)	127, 159
AleI	CACNNNNGTG	1 cut(s)	318
AluBI	AGCT	3 cut(s)	37, 49, 297
AluI	AGCT	3 cut(s)	37, 49, 297
ApeKI	GCWGC	3 cut(s)	225, 228, 294
ApoI	RAATTY	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	378
AsuHPI	GGTGA	2 cut(s)	121, 298
BbsI	GAAGAC	1 cut(s)	316
BbvI	GCAGC	3 cut(s)	237, 240, 306
BclI	TGATCA	1 cut(s)	253
BisI	GCNGC	3 cut(s)	226, 229, 295
BlsI	GCNGC	3 cut(s)	227, 230, 296
BmsI	GCATC	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	316
BpmI	CTGGAG	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse8I	GATNNNNATC	1 cut(s)	252
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	24, 31
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	3 cut(s)	237, 240, 306
Bsh1285I	CGRYCG	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	126, 253
BspACI	CCGC	1 cut(s)	211
BspCNI	CTCAG	2 cut(s)	25, 30
BspQI	GCTCTTC	1 cut(s)	284
BssMI	GATC	2 cut(s)	126, 253
Bst4CI	ACNGT	2 cut(s)	320, 372
Bst6I	CTCTTC	1 cut(s)	284
BstDEI	CTNAG	2 cut(s)	17, 33
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	2 cut(s)	129, 256
BstMBI	GATC	2 cut(s)	126, 253
BstMCI	CGRYCG	1 cut(s)	125
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstV1I	GCAGC	3 cut(s)	237, 240, 306
BstV2I	GAAGAC	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	325
CfoI	GCGC	1 cut(s)	378
CviJI	RGCY	5 cut(s)	37, 49, 193, 231, 297
CviKI_1	RGCY	5 cut(s)	37, 49, 193, 231, 297
DdeI	CTNAG	2 cut(s)	17, 33
DpnI	GATC	2 cut(s)	128, 255
DpnII	GATC	2 cut(s)	126, 253
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
FaiI	YATR	6 cut(s)	152, 174, 197, 237, 350, 355
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FauI	CCCGC	1 cut(s)	204
FbaI	TGATCA	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	338
Fnu4HI	GCNGC	3 cut(s)	226, 229, 295
Fsp4HI	GCNGC	3 cut(s)	226, 229, 295
FspI	TGCGCA	1 cut(s)	377
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	3 cut(s)	226, 229, 295
GsuI	CTGGAG	1 cut(s)	59
HhaI	GCGC	1 cut(s)	378
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	1 cut(s)	67
HphI	GGTGA	2 cut(s)	121, 298
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	3 cut(s)	20, 34, 55
Hpy8I	GTNNAC	1 cut(s)	339
HpyCH4III	ACNGT	2 cut(s)	320, 372
HpyCH4V	TGCA	1 cut(s)	348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	17, 33
HspAI	GCGC	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	126, 253
LguI	GCTCTTC	1 cut(s)	284
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	4 cut(s)	23, 100, 176, 221
Lsp1109I	GCAGC	3 cut(s)	237, 240, 306
LweI	GCATC	1 cut(s)	113
MalI	GATC	2 cut(s)	128, 255
MboI	GATC	2 cut(s)	126, 253
MboII	GAAGA	4 cut(s)	71, 257, 301, 321
MluCI	AATT	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	3 cut(s)	3, 210, 215
MseI	TTAA	2 cut(s)	201, 385
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	2 cut(s)	126, 253
NmeAIII	GCCGAG	1 cut(s)	328
NsbI	TGCGCA	1 cut(s)	377
OliI	CACNNNNGTG	1 cut(s)	318
PciSI	GCTCTTC	1 cut(s)	284
PkrI	GCNGC	3 cut(s)	227, 230, 296
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	318
SalI	GTCGAC	1 cut(s)	337
SapI	GCTCTTC	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	201, 385
SatI	GCNGC	3 cut(s)	226, 229, 295
Sau3AI	GATC	2 cut(s)	126, 253
SchI	GAGTC	1 cut(s)	61
SetI	ASST	7 cut(s)	25, 39, 51, 93, 114, 119, 299
SfaNI	GCATC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	1 cut(s)	380
SsiI	CCGC	1 cut(s)	211
TaaI	ACNGT	2 cut(s)	320, 372
TaqI	TCGA	3 cut(s)	125, 179, 338
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	380
Tru1I	TTAA	2 cut(s)	201, 385
Tru9I	TTAA	2 cut(s)	201, 385
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	3 cut(s)	225, 228, 294
TspRI	CASTG	1 cut(s)	325
XapI	RAATTY	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.