Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001065

Physical Location & Seq

Genomic Coordinates Reverse (-)

37173579 .. 37185800

Gene Structure 12222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0314000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGACATGCAGACACACCGCCAGGCGGGCTACAGCCTCAGCGTCGGACCACCTCCAGATCGCCGCCGACGCGCCGCCACGCGTCGCGCCAAGATGGCATCAGAAGCTTCTGAAACTGGGAACTGAAGCATATCAGTCCCACATCGAAAACAAAGAGAAGATCAACCTCTTCCTCACCTATAAAAGGCGGGCTACAGCCTCAGCGTCGGACCACCTCCAGATCGCCGCCGACGCGCCGCCACGCGTCGCGCCAAGATGGCATCAGAAGCTTCTGAAACTGGGAACTGAAGCATATCAGTCCCACATCGAAAACAAAGAGAAGATCAACCTCTTCCTCACCTATAAAAGGAACTTCCGGGCACAATTACTAGCTAATGCACATGCTGCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006342 GO:0006344 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

Chromo Helicase_C SNF2_N

Protein Analysis

130

Amino Acids

14.83

Weight (kDa)

10.24

Isoelectric Point (pI)

66.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08060 AT1G08060 AT1G08060
fragaria_vesca	FvH4_3g31740 FvH4_3g31740 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540
malus_domestica	MD03G1121600.v1.1 MD11G1139900.v1.1 MD11G1140000.v1.1
prunus_persica	Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104700_v2.0.a1
pyrus_communis	pycom11g11560 pycom11g11580
rosa_chinensis	RchiOBHm_Chr4g0405411 RchiOBHm_Chr5g0058411
rosa_laevigata	RLG00000008844 RLG00000035218
rosa_multiflora	Rmu_sc0000367.1_g000115 Rmu_sc0000575.1_g000013
rosa_roxburghii	Rroxscaffold_1G00022120 Rroxscaffold_1G00022140 Rroxscaffold_5G00349880
rosa_rugosa	Rorug04G0059700 Rorug04G0059800 Rorug04G0059900 Rorug04G0060000 Rorug05G0313800 Rorug05G0313800 Rorug05G0313900 Rorug05G0314000 Rorug05G0314100
rosa_samantha	Rh4AG131700 Rh4BG126600 Rh4CG139100 Rh4DG125700 Rh5AG381300 Rh5BG392800 Rh5CG416900 Rh5DG408000
rosa_wichuraiana	Rw4G010660 Rw5G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	6 cut(s)	71, 81, 86, 233, 243, 248
AciI	CCGC	7 cut(s)	18, 25, 63, 74, 187, 225, 236
AcuI	CTGAAG	2 cut(s)	144, 306
AfiI	CCNNNNNNNGG	3 cut(s)	24, 183, 345
AflIII	ACRYGT	2 cut(s)	79, 241
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	3 cut(s)	106, 268, 371
AluI	AGCT	3 cut(s)	106, 268, 371
ApeKI	GCWGC	1 cut(s)	383
AspLEI	GCGC	4 cut(s)	73, 88, 235, 250
AspS9I	GGNCC	2 cut(s)	46, 208
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	2 cut(s)	166, 328
AvaII	GGWCC	2 cut(s)	46, 208
BaeGI	GKGCMC	1 cut(s)	361
BbvCI	CCTCAGC	2 cut(s)	37, 199
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	2 cut(s)	87, 249
BciT130I	CCWGG	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	356
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	2 cut(s)	30, 192
BglI	GCCNNNNNGGC	3 cut(s)	26, 94, 256
BisI	GCNGC	5 cut(s)	63, 74, 225, 236, 384
BlsI	GCNGC	5 cut(s)	64, 75, 226, 237, 385
Bme1390I	CCNGG	2 cut(s)	22, 356
Bme18I	GGWCC	2 cut(s)	46, 208
BmgT120I	GGNCC	2 cut(s)	46, 208
BmrFI	CCNGG	2 cut(s)	22, 356
BmrI	ACTGGG	2 cut(s)	125, 287
BmsI	GCATC	2 cut(s)	106, 268
BmuI	ACTGGG	2 cut(s)	125, 287
BpmI	CTGGAG	2 cut(s)	38, 200
Bpu10I	CCTNAGC	2 cut(s)	37, 199
BpuMI	CCSGG	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 183, 345
Bse1I	ACTGG	2 cut(s)	120, 282
BseBI	CCWGG	1 cut(s)	22
BseLI	CCNNNNNNNGG	3 cut(s)	24, 183, 345
BseMII	CTCAG	2 cut(s)	51, 213
BseNI	ACTGG	2 cut(s)	120, 282
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	1 cut(s)	370
Bsh1236I	CGCG	6 cut(s)	71, 81, 86, 233, 243, 248
BsiSI	CCGG	1 cut(s)	355
BslFI	GGGAC	2 cut(s)	121, 283
BslI	CCNNNNNNNGG	3 cut(s)	24, 183, 345
BsmFI	GGGAC	2 cut(s)	121, 283
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	4 cut(s)	57, 159, 219, 321
BspACI	CCGC	7 cut(s)	18, 25, 63, 74, 187, 225, 236
BspCNI	CTCAG	2 cut(s)	50, 212
BspFNI	CGCG	6 cut(s)	71, 81, 86, 233, 243, 248
BsrI	ACTGG	2 cut(s)	120, 282
BssMI	GATC	4 cut(s)	57, 159, 219, 321
Bst2UI	CCWGG	1 cut(s)	22
Bst6I	CTCTTC	2 cut(s)	173, 335
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	2 cut(s)	27, 189
BstDEI	CTNAG	2 cut(s)	37, 199
BstENI	CCTNNNNNAGG	2 cut(s)	181, 343
BstFNI	CGCG	6 cut(s)	71, 81, 86, 233, 243, 248
BstHHI	GCGC	4 cut(s)	73, 88, 235, 250
BstKTI	GATC	4 cut(s)	60, 162, 222, 324
BstMBI	GATC	4 cut(s)	57, 159, 219, 321
BstMWI	GCNNNNNNNGC	8 cut(s)	26, 68, 94, 103, 230, 256, 265, 383
BstNI	CCWGG	1 cut(s)	22
BstNSI	RCATGY	2 cut(s)	9, 383
BstSCI	CCNGG	2 cut(s)	20, 354
BstSFI	CTRYAG	2 cut(s)	30, 192
BstSLI	GKGCMC	1 cut(s)	361
BstUI	CGCG	6 cut(s)	71, 81, 86, 233, 243, 248
BstV1I	GCAGC	1 cut(s)	370
Cac8I	GCNNGC	2 cut(s)	27, 189
CfoI	GCGC	4 cut(s)	73, 88, 235, 250
Cfr13I	GGNCC	2 cut(s)	46, 208
CseI	GACGC	6 cut(s)	30, 70, 77, 192, 232, 239
CviAII	CATG	2 cut(s)	6, 380
CviJI	RGCY	7 cut(s)	29, 35, 106, 191, 197, 268, 371
CviKI_1	RGCY	7 cut(s)	29, 35, 106, 191, 197, 268, 371
DdeI	CTNAG	2 cut(s)	37, 199
DpnI	GATC	4 cut(s)	59, 161, 221, 323
DpnII	GATC	4 cut(s)	57, 159, 219, 321
Eam1104I	CTCTTC	2 cut(s)	173, 335
EarI	CTCTTC	2 cut(s)	173, 335
Eco47I	GGWCC	2 cut(s)	46, 208
Eco57I	CTGAAG	2 cut(s)	144, 306
EcoNI	CCTNNNNNAGG	2 cut(s)	181, 343
EcoRII	CCWGG	1 cut(s)	20
FaeI	CATG	2 cut(s)	9, 383
FaiI	YATR	6 cut(s)	7, 130, 180, 292, 342, 381
FaqI	GGGAC	2 cut(s)	121, 283
FatI	CATG	2 cut(s)	5, 379
FauI	CCCGC	2 cut(s)	18, 180
Fnu4HI	GCNGC	5 cut(s)	63, 74, 225, 236, 384
Fsp4HI	GCNGC	5 cut(s)	63, 74, 225, 236, 384
FspBI	CTAG	1 cut(s)	368
GlaI	GCGC	4 cut(s)	72, 87, 234, 249
GluI	GCNGC	5 cut(s)	63, 74, 225, 236, 384
GsuI	CTGGAG	2 cut(s)	38, 200
HapII	CCGG	1 cut(s)	355
HgaI	GACGC	6 cut(s)	30, 70, 77, 192, 232, 239
HhaI	GCGC	4 cut(s)	73, 88, 235, 250
Hin1II	CATG	2 cut(s)	9, 383
Hin6I	GCGC	4 cut(s)	71, 86, 233, 248
HinP1I	GCGC	4 cut(s)	71, 86, 233, 248
HindIII	AAGCTT	2 cut(s)	104, 266
HpaII	CCGG	1 cut(s)	355
HphI	GGTGA	2 cut(s)	166, 328
Hpy188I	TCNGA	6 cut(s)	46, 102, 111, 208, 264, 273
Hpy188III	TCNNGA	2 cut(s)	55, 217
Hpy99I	CGWCG	6 cut(s)	46, 71, 86, 208, 233, 248
HpyCH4V	TGCA	2 cut(s)	9, 377
HpyF10VI	GCNNNNNNNGC	8 cut(s)	26, 68, 94, 103, 230, 256, 265, 383
HpyF3I	CTNAG	2 cut(s)	37, 199
Hsp92II	CATG	2 cut(s)	9, 383
HspAI	GCGC	4 cut(s)	71, 86, 233, 248
Kzo9I	GATC	4 cut(s)	57, 159, 219, 321
LpnPI	CCDG	7 cut(s)	7, 34, 68, 101, 230, 263, 368
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	2 cut(s)	106, 268
MaeI	CTAG	1 cut(s)	368
MalI	GATC	4 cut(s)	59, 161, 221, 323
MboI	GATC	4 cut(s)	57, 159, 219, 321
MboII	GAAGA	4 cut(s)	160, 169, 322, 331
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	1 cut(s)	362
MluI	ACGCGT	2 cut(s)	79, 241
MmeI	TCCRAC	2 cut(s)	24, 186
MnlI	CCTC	8 cut(s)	46, 62, 176, 182, 208, 224, 338, 344
MspI	CCGG	1 cut(s)	355
MspR9I	CCNGG	2 cut(s)	22, 356
MvaI	CCWGG	1 cut(s)	22
MvnI	CGCG	6 cut(s)	71, 81, 86, 233, 243, 248
MwoI	GCNNNNNNNGC	8 cut(s)	26, 68, 94, 103, 230, 256, 265, 383
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	4 cut(s)	57, 159, 219, 321
NlaIII	CATG	2 cut(s)	9, 383
NspI	RCATGY	2 cut(s)	9, 383
PkrI	GCNGC	5 cut(s)	64, 75, 226, 237, 385
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspPI	GGNCC	2 cut(s)	46, 208
SatI	GCNGC	5 cut(s)	63, 74, 225, 236, 384
Sau3AI	GATC	4 cut(s)	57, 159, 219, 321
Sau96I	GGNCC	2 cut(s)	46, 208
ScrFI	CCNGG	2 cut(s)	22, 356
SduI	GDGCHC	1 cut(s)	361
SetI	ASST	9 cut(s)	54, 108, 168, 179, 216, 270, 330, 341, 373
SfaNI	GCATC	2 cut(s)	106, 268
SfcI	CTRYAG	2 cut(s)	30, 192
SinI	GGWCC	2 cut(s)	46, 208
Sse9I	AATT	1 cut(s)	362
SsiI	CCGC	7 cut(s)	18, 25, 63, 74, 187, 225, 236
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	2 cut(s)	20, 354
TaqI	TCGA	2 cut(s)	144, 306
TasI	AATT	1 cut(s)	362
TauI	GCSGC	4 cut(s)	65, 76, 227, 238
TseI	GCWGC	1 cut(s)	383
VpaK11BI	GGWCC	2 cut(s)	46, 208
XagI	CCTNNNNNAGG	2 cut(s)	181, 343
XceI	RCATGY	2 cut(s)	9, 383
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.