Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001065

Physical Location & Seq

Genomic Coordinates Reverse (-)

13007255 .. 13014466

Gene Structure 7212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1140000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4554 bp

ATGATTAATTCTGTCACCAAAAAAAATCAAAAAAGCAGAAAACCAACCGGGCCGCCTCTCCTTTTTCTTTCACATCCCTTTAATCTTCCTGAGAAAATATTTCACTTTCTCGCCGGAAATTCGAAAGTAGAAACCCTAGCATTCTCCGATTACTGCCGAAAAATTGAAATTGGGCGCCAAATTCTTCCGCGTTGCTCTAACGTTTGCGGAAATTTGGGTTGCAAAACTAAAATGGCGAAGACTCCTCCGCCAGCGAAGAGGAAATCCGAGAGATTTGAGATGAAGAAGTCGACGCAGAGCCCGCTGCGGCGGTCGCCGAGGGCGAAGAACCACTCGTCGACTTCGTCTGGTTCGAAATTGTCTGACGGTAAAAGCTCGGCGTCGTCGTTAATGGAGCTGCGGAATATGGAAGTGAGAAGGAGGGAAGTAGGGAAGAGCCAGAAGAATAGTGTAGTGGGAAAGAAGATACTGGATTATAGAAGTTACAAGGCAATGTTTCTGAAAAATGGAAAGAAGGATAATGCAGCAGTAAATGAAAGCAAAGGCGATTGTGAAAAGTTGTTGAAGGTGTTGCGTAGCAGTGAGCGGGAAAGTCAGCCTAAGGATGAAGAGCAACACCTTAGGTTTCAGAAAAAGGTGGTGGAGGGAGAGTACAAACAGTGGACATCTTGTTCCGGTTTGTCTCAGGGGAAACGGAAAGGGGAACAACAGCTTGATGTGTTGTCAGCGATATGGGAAGTTGAAAGTGGTAAAGTTGTGAAAAAGCGCAGGACGGTTGTAAATAGAAATGATGATTCACCCCATCTAAAACCGGGATCAGAGGGGAAATCAAGTCCTGGATGTAAGAAAGGAGCTTCTGTAACTCCAGCAGATATTGTGCCTGATTCTTCTACCAGGACAACTGGTTGTGAAAATACAGTAACTGATGAAAATTGTGCCTCTACTTCTCATAATGTAGATAAAAATGGATTAGAAAAACCGGAGAGTAACCTGTTTGAATCTGAGGAGAGAAGAAAATTGTGTGATGGCCAGAAGAGTCTCCATCTGCTTTTGAAGCCACGGATGTCAAAATTATGTGAAATCCTACAACTCTCTGAAGATCTGAAGGATACGGTCAGAATGCTTCTTGAATATGTCATGAGTAATCACAGAGTAGATACAAAACCAGCAACAATACTGCAGGCATTTCAGATATCTCTGTGTTGGGCTGCAGCTTCATTTCTCAAGCAAAAAGTCAACCACAAAGAATCACTTTTGCTTGCAAAGCAGCACCTTAACTTTACTTGCACAAAGGACGAGGCATACTCTTTTTATTCAATGCTGCAGTGTTTGAAGACAACCTTTTTACTACATACAGGGACTTTTAAGGATGCAGAGTCTCGAAAGTTCGCTAAGTTATCAGGTAAAAGTGCTCAGGACCATTTAAATGCGAAGGGTACACAATCAACGACTTCTAACTTGCAGAAGGTCCAATCAGAGGTCAAAGACTTGACTGTGAATCCAGAATATGTAGCACACAAAGATGTCTCAAAAAGTATCAAAGGAATTCGTAAAAAGTTCAAGAAGAAGATGACAAAACTTACCGAGAAGCATAAAAAAGAGAAAATTGAGTTTTTGAAAAATTACGAGGAAGAAAAGGGGTGTCTAGAAAGAGAGCACAAAACAGAGTTGGCCGTTATTCAATCTTGTTTCCAGATTAATACTTCAATGAGATCAGACAAGCTCAAGAAGTTGGAAAAGGAAATTGAAGAACATCAACAACGTGTGGACATAGATCTTGAGCGTCTTGAGGCACTGCAGCAGGAAGCATTGTATAAGTTGATGGATAAGCAGAAACAATTGTTAGAGAAAGTGGGATCCTGGGCACGGCTCAAATTGCCAAATAGATCATCTTCAAATAAACCTGAGCCTGAGTTGGAATGCTCACAGACTAGTGAACAAATTAGAGTTAACAAAGATCTGGATGATTTTGCCTCGCTAAGAGAGCATGATCTTGACAAGATTGTGCCGAGCATGACAAAGGGAGTGATAGGACTGTCTGGAACTCCAGAAAGGAATTCTGATGAAGCTGTAGCATGTAGTGGTCCCATTAAAAAAGTGACGACTCCAACAGGATTGCACGAGAGTGTCAGTTCAAGTAATGGTTTGCATAAAGTTGTTTCTATAAGCCCACCTTCATCTGAAGAACAAATCCATGCAGTGACGGTAGCCAGTTCAGATAAAGTGGTCGATTCGGGACGGCTTGAGACTGTCAGTTCAAATGATGTCTTGAAGGATTTTGCCTTTGTCAATCCACCTTCATCTGAACAACAAATCCCTGAAAAAGCCTCAAAACATGGGATTGTTAGTTCAAGTAATGGTTTGCATAATCTTGAGTCTCTGAGCTCTTCTTCATCTGAAGAACGAACCCGCATAGTGACAGTAACCGTGGCACCTAAAGATGTAGAGCTGGGTGTCCTTGAGCCTGTCAGTTTGAATGATTGTCTACAGAACCTTGTGTCGGTGGATCTACGTTCATCTGAAGAACAAATCTATGAAAACATAACAGAACATGAGACTGTCAGTTTAAGTCCTGATTTGCAATATGTTGTGTCTATGAGCCCACCTTCATCTGAAGAAGAATTCCAGGCAGTGACAGTAAATATTCCTGATAAAGTGGTCGGTTCAGAAGTTCTTGAGACTGTCTCTCCAATTGATGACCTGGGGAATCTTGTCTCTGTGGGTCCAGCTTCATCTGTAGGACAAACCCCTGAAAAAACCACTAAACATGATACTGTCATTTCAAGTCATGGTTTGCATAATCTTGAGTATCTGGATTCACCTTCATTCGTTGAACAAAACCCCGAAAAATCCACAGAAAAGGAGAACAGTGAATTGAACGCTGTGGCATCTGATAGTGCAACTAGGGTCAACCAACAGAATGGAGTGGATATTGCAGCAAATGAAAACTTTTCTGGGAAAAATACCCTGGTAAACTCACCAGCAGTGGAGCTTGTGACAGCCGTGGTGGATGCCGGTTCAGTGACACTACATCAGGCACACCAAGACAAAGGTACTCTGTTAGCCACATTGCGAGAAGTTCAATGTGGAGATGCACAAGCTAGAGAAATGCAGAATACTGCCCAACCAGTTGAAATTCAAGTATCCCAATCAGTCGCAACAGTAGCATACGTTCATTCTGATCTTGCTGTGGACAATGAGCCTGTGGTACAAGTGCCACAGCCACCATACTCTAATGCACCTGATTGTAATCCTCTTGAGTTAACTTCAGTTGGTGGAATTGAAATTCAGCCAAGTATTGAAGATCATACCATTGACCAAACTGCTCAGGGTTCATATGAAAATGCTGCGAACTTACCTGATCTTTCAGATCAAACTTTTTTGCAGCCTCTGACATTGCATCAGTCTGTTAATATCCCTACTAGTGGATTTGGACAGCTTTTGCCAGACACATGGGCTACATCTGCTACTTATGCATTTAATACTCATCCTATACATGCTGCACCTCATATGGCATATGGGATGCCTCTGACCTCATCCCCTGACCCTCTTCAATATGAATTGGAAAGATTGAAGAAGGAAACAGACCAAAACCATAAGTCTCATGAAGATATGAAGCAGCGCCTGAAATCTGATTGTGAAAAGGAGATAGAGGAGGCTACTACTGAAATTCGTCGCAAGTATGAAATTAGATTACTGGAGACTGAAGCTGAATTTCACAGTAAAAAGAAGGAACAGGATGCAATCCGTGACCAGGTTATAAGGAATAAGATTCTCTCCTGGGCTTTCTGTAAATACATGGATCTTATTAGGGCATCGAGTGCATCTGGAGTGCAGAAAGATGGCAATTCCAATTTCGTCCAGCAGCTGCACCAGCTCTCTATGCTGCAAAATGCACAAAGAAGTTCTACAGTTGCCGGTTCATCTTTGGCAAGCCCTCCTGCAGCTAGCCTGGCAACTTCAATTGCACTCACACGCAGCCTCCAGGCAACCCCACCTGCACCTGCGCCTGCATGTGCACCTGCAACCAATCCGCATTGTACAGTTCCACCTACACAGACTCTTCCTTTTTTGCCTGCTCAATATCCCAGCATTCCAGCAAGACCGCCTCACATTGGTTCCTTCGCTTCCATTGGAATCCCCCGAGTTGGAGGTGATATTCGTGCCCCAGCTCCACATCTCCAACCTTTTAGACCCCCAACATCCATGTCAAATTGGCAGTCACATAGCAACTCTTCTGCAATGTCCCAGTCACTTCCCCATATGCCACGACTTCCAACCCCCACACAACAATCTCTTCCTTATAATAGGGCTCACCATCCTGAAACTGCAGGAGGATTGTCTGGTCTTCGTTGTAATATATCCGCGTTGGAGTTACTAATGAACAGCCAATCTGGTGCTAGCCCACCTGGTATTTTTCCCTCATTGCTGAATTTGGCTTTAAGCCGTGACCAATTGCACCTTTCTAGTCCTGCCCCTACCATCGGAACATGTTTCAACCAAGTACATACTGCTGGACGCACAGACGTAGTTTGTTTATCGGACGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006342 GO:0006344 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

1518

Amino Acids

167.02

Weight (kDa)

7.16

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOM1	PF25029	342 - 464	4.6e-53	MOM1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08060 AT1G08060 AT1G08060
fragaria_vesca	FvH4_3g31740 FvH4_3g31740 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540
malus_domestica	MD03G1121600.v1.1 MD11G1139900.v1.1 MD11G1140000.v1.1
prunus_persica	Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104700_v2.0.a1
pyrus_communis	pycom11g11560 pycom11g11580
rosa_chinensis	RchiOBHm_Chr4g0405411 RchiOBHm_Chr5g0058411
rosa_laevigata	RLG00000008844 RLG00000035218
rosa_multiflora	Rmu_sc0000367.1_g000115 Rmu_sc0000575.1_g000013
rosa_roxburghii	Rroxscaffold_1G00022120 Rroxscaffold_1G00022140 Rroxscaffold_5G00349880
rosa_rugosa	Rorug04G0059700 Rorug04G0059800 Rorug04G0059900 Rorug04G0060000 Rorug05G0313800 Rorug05G0313800 Rorug05G0313900 Rorug05G0314000 Rorug05G0314100
rosa_samantha	Rh4AG131700 Rh4BG126600 Rh4CG139100 Rh4DG125700 Rh5AG381300 Rh5BG392800 Rh5CG416900 Rh5DG408000
rosa_wichuraiana	Rw4G010660 Rw5G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	3761, 4305
AarI	CACCTGC	3 cut(s)	4006, 4012, 4030
Acc36I	ACCTGC	3 cut(s)	4006, 4012, 4030
AccB1I	GGYRCC	2 cut(s)	174, 2431
AccBSI	CCGCTC	1 cut(s)	586
AccI	GTMKAC	3 cut(s)	290, 338, 2485
AccII	CGCG	2 cut(s)	190, 4367
AclI	AACGTT	1 cut(s)	201
AclWI	GGATC	5 cut(s)	823, 1851, 1864, 2514, 3810
AcoI	YGGCCR	2 cut(s)	1027, 1671
AcuI	CTGAAG	8 cut(s)	1116, 1124, 2202, 2418, 2541, 2634, 3252, 3726
AcyI	GRCGYC	2 cut(s)	175, 380
AfaI	GTAC	6 cut(s)	653, 1438, 3055, 3210, 4042, 4506
AfiI	CCNNNNNNNGG	8 cut(s)	1477, 1866, 2500, 3425, 3754, 4115, 4148, 4484
AflIII	ACRYGT	2 cut(s)	1762, 4490
AhlI	ACTAGT	2 cut(s)	1931, 3422
AleI	CACNNNNGTG	1 cut(s)	2124
AloI	GAACNNNNNNTCC	6 cut(s)	655, 687, 2298, 2330, 2332, 2364
Alw21I	GWGCWC	4 cut(s)	1414, 1659, 2387, 4021
Alw44I	GTGCAC	1 cut(s)	4017
AlwI	GGATC	5 cut(s)	823, 1851, 1864, 2514, 3810
AlwNI	CAGNNNCTG	4 cut(s)	923, 3391, 3625, 3868
Ama87I	CYCGRG	1 cut(s)	4143
AoxI	GGCC	3 cut(s)	50, 1027, 1671
ApaLI	GTGCAC	1 cut(s)	4017
ArsI	GACNNNNNNTTYG	2 cut(s)	4205, 4237
AseI	ATTAAT	2 cut(s)	6, 1698
AspLEI	GCGC	4 cut(s)	177, 768, 3624, 4009
AspS9I	GGNCC	5 cut(s)	50, 1417, 1468, 2084, 2723
AsuC2I	CCSGG	2 cut(s)	49, 813
AsuHPI	GGTGA	6 cut(s)	7, 789, 2811, 2970, 4166, 4307
AsuII	TTCGAA	2 cut(s)	122, 353
AsuNHI	GCTAGC	2 cut(s)	3947, 4400
AvaI	CYCGRG	1 cut(s)	4143
AvaII	GGWCC	4 cut(s)	1417, 1468, 2084, 2723
AxyI	CCTNAGG	2 cut(s)	600, 620
BaeGI	GKGCMC	3 cut(s)	1867, 4021, 4168
BalI	TGGCCA	1 cut(s)	1029
BamHI	GGATCC	1 cut(s)	1856
BanI	GGYRCC	2 cut(s)	174, 2431
BanII	GRGCYC	4 cut(s)	302, 2387, 2603, 4315
BauI	CACGAG	1 cut(s)	2120
BbsI	GAAGAC	3 cut(s)	245, 1340, 4340
Bbv12I	GWGCWC	4 cut(s)	1414, 1659, 2387, 4021
BccI	CCATC	7 cut(s)	810, 1019, 1050, 1816, 3836, 4326, 4490
BceAI	ACGGC	5 cut(s)	1658, 1883, 2255, 2987, 4431
BciVI	GTATCC	2 cut(s)	1102, 3154
BcnI	CCSGG	2 cut(s)	49, 813
BcuI	ACTAGT	2 cut(s)	1931, 3422
BfaI	CTAG	9 cut(s)	137, 1646, 1932, 2904, 3102, 3423, 3948, 4401, 4467
BfoI	RGCGCY	2 cut(s)	178, 3625
BfuAI	ACCTGC	3 cut(s)	4006, 4012, 4030
BfuI	GTATCC	2 cut(s)	1102, 3154
BglII	AGATCT	3 cut(s)	1099, 1774, 1957
Bme18I	GGWCC	4 cut(s)	1417, 1468, 2084, 2723
BmeT110I	CYCGRG	1 cut(s)	4143
BmgT120I	GGNCC	5 cut(s)	50, 1417, 1468, 2084, 2723
BmiI	GGNNCC	6 cut(s)	176, 1858, 2086, 2433, 2724, 4120
BmrI	ACTGGG	1 cut(s)	4243
BmsI	GCATC	9 cut(s)	1360, 2897, 3001, 3082, 3409, 3513, 3730, 3824, 3833
BmtI	GCTAGC	2 cut(s)	3951, 4404
BmuI	ACTGGG	1 cut(s)	4243
BpiI	GAAGAC	3 cut(s)	245, 1340, 4340
BplI	GAGNNNNNCTC	4 cut(s)	1289, 1321, 2669, 2701
BpmI	CTGGAG	5 cut(s)	849, 2031, 3719, 3849, 3968
Bpu10I	CCTNAGC	3 cut(s)	1413, 1905, 3327
Bpu14I	TTCGAA	2 cut(s)	122, 353
BpuMI	CCSGG	2 cut(s)	49, 813
BsaBI	GATNNNNATC	1 cut(s)	3249
BsaHI	GRCGYC	2 cut(s)	175, 380
BsaJI	CCNNGG	8 cut(s)	317, 1058, 1860, 2427, 2701, 2967, 3003, 3780
BsaWI	WCCGGW	2 cut(s)	674, 979
BsaXI	ACNNNNNCTCC	8 cut(s)	635, 665, 843, 873, 2671, 2701, 3966, 3996
Bsc4I	CCNNNNNNNGG	8 cut(s)	1477, 1866, 2500, 3425, 3754, 4115, 4148, 4484
Bse118I	RCCGGY	2 cut(s)	3014, 3917
Bse1I	ACTGG	6 cut(s)	474, 907, 2211, 3128, 3702, 4249
Bse21I	CCTNAGG	2 cut(s)	600, 620
Bse3DI	GCAATG	5 cut(s)	498, 3068, 3395, 4248, 4424
Bse8I	GATNNNNATC	1 cut(s)	3249
BseDI	CCNNGG	8 cut(s)	317, 1058, 1860, 2427, 2701, 2967, 3003, 3780
BseJI	GATNNNNATC	1 cut(s)	3249
BseLI	CCNNNNNNNGG	8 cut(s)	1477, 1866, 2500, 3425, 3754, 4115, 4148, 4484
BseMI	GCAATG	5 cut(s)	498, 3068, 3395, 4248, 4424
BseMII	CTCAG	8 cut(s)	81, 698, 993, 1427, 1896, 1902, 2372, 3341
BseNI	ACTGG	6 cut(s)	474, 907, 2211, 3128, 3702, 4249
BseRI	GAGGAG	3 cut(s)	234, 1019, 3668
BseSI	GKGCMC	3 cut(s)	1867, 4021, 4168
BseYI	CCCAGC	3 cut(s)	2449, 4088, 4168
BsgI	GTGCAG	4 cut(s)	3486, 3854, 3854, 3984
Bsh1236I	CGCG	2 cut(s)	190, 4367
Bsh1285I	CGRYCG	1 cut(s)	314
BshFI	GGCC	3 cut(s)	52, 1029, 1673
BshNI	GGYRCC	2 cut(s)	174, 2431
BsiEI	CGRYCG	1 cut(s)	314
BsiHKAI	GWGCWC	4 cut(s)	1414, 1659, 2387, 4021
BsiHKCI	CYCGRG	1 cut(s)	4143
BsiSI	CCGG	7 cut(s)	48, 114, 675, 812, 980, 3015, 3918
BslFI	GGGAC	4 cut(s)	1372, 2070, 2250, 4231
BslI	CCNNNNNNNGG	8 cut(s)	1477, 1866, 2500, 3425, 3754, 4115, 4148, 4484
BsmFI	GGGAC	4 cut(s)	1372, 2070, 2250, 4231
BsmI	GAATGC	4 cut(s)	140, 1125, 1925, 4092
BsnI	GGCC	3 cut(s)	52, 1029, 1673
BsoBI	CYCGRG	1 cut(s)	4143
Bsp119I	TTCGAA	2 cut(s)	122, 353
Bsp1286I	GDGCHC	9 cut(s)	302, 1414, 1659, 1867, 2387, 2603, 4021, 4168, 4315
Bsp1407I	TGTACA	1 cut(s)	4040
BspANI	GGCC	3 cut(s)	52, 1029, 1673
BspCNI	CTCAG	8 cut(s)	82, 697, 994, 1426, 1897, 1903, 2373, 3340
BspFNI	CGCG	2 cut(s)	190, 4367
BspHI	TCATGA	2 cut(s)	1137, 3604
BspLI	GGNNCC	6 cut(s)	176, 1858, 2086, 2433, 2724, 4120
BspMAI	CTGCAG	6 cut(s)	1182, 1213, 1326, 1800, 3946, 4333
BspMI	ACCTGC	3 cut(s)	4006, 4012, 4030
BspOI	GCTAGC	2 cut(s)	3951, 4404
BspPI	GGATC	5 cut(s)	823, 1851, 1864, 2514, 3810
BspQI	GCTCTTC	3 cut(s)	428, 603, 2392
BspT104I	TTCGAA	2 cut(s)	122, 353
BspT107I	GGYRCC	2 cut(s)	174, 2431
BsrBI	CCGCTC	1 cut(s)	586
BsrDI	GCAATG	5 cut(s)	498, 3068, 3395, 4248, 4424
BsrFI	RCCGGY	2 cut(s)	3014, 3917
BsrGI	TGTACA	1 cut(s)	4040
BsrI	ACTGG	6 cut(s)	474, 907, 2211, 3128, 3702, 4249
BssAI	RCCGGY	2 cut(s)	3014, 3917
BssECI	CCNNGG	8 cut(s)	317, 1058, 1860, 2427, 2701, 2967, 3003, 3780
BssNI	GRCGYC	2 cut(s)	175, 380
BssSI	CACGAG	1 cut(s)	2120
Bst2BI	CACGAG	1 cut(s)	2120
Bst6I	CTCTTC	9 cut(s)	251, 428, 603, 1028, 2392, 3555, 4068, 4240, 4302
BstACI	GRCGYC	2 cut(s)	175, 380
BstAPI	GCANNNNNTGC	1 cut(s)	3821
BstAUI	TGTACA	1 cut(s)	4040
BstBI	TTCGAA	2 cut(s)	122, 353
BstC8I	GCNNGC	9 cut(s)	252, 302, 1182, 1260, 3934, 3949, 4011, 4077, 4402
BstDSI	CCRYGG	3 cut(s)	1058, 2427, 3003
BstFNI	CGCG	2 cut(s)	190, 4367
BstH2I	RGCGCY	2 cut(s)	178, 3625
BstHHI	GCGC	4 cut(s)	177, 768, 3624, 4009
BstMCI	CGRYCG	1 cut(s)	314
BstNSI	RCATGY	4 cut(s)	2079, 3500, 4017, 4494
BstSLI	GKGCMC	3 cut(s)	1867, 4021, 4168
BstUI	CGCG	2 cut(s)	190, 4367
BstV2I	GAAGAC	3 cut(s)	245, 1340, 4340
BstX2I	RGATCY	6 cut(s)	1099, 1774, 1856, 1957, 2506, 3802
BstXI	CCANNNNNNTGG	2 cut(s)	2921, 3453
BstYI	RGATCY	6 cut(s)	1099, 1774, 1856, 1957, 2506, 3802
Bsu36I	CCTNAGG	2 cut(s)	600, 620
BsuI	GTATCC	2 cut(s)	1102, 3154
BsuRI	GGCC	3 cut(s)	52, 1029, 1673
BtgI	CCRYGG	3 cut(s)	1058, 2427, 3003
BtsI	GCAGTG	6 cut(s)	586, 1331, 1793, 2205, 2637, 2991
BtsIMutI	CAGTG	9 cut(s)	586, 665, 1331, 1793, 2205, 2637, 2875, 2991, 3027
BveI	ACCTGC	3 cut(s)	4006, 4012, 4030
Cac8I	GCNNGC	9 cut(s)	252, 302, 1182, 1260, 3934, 3949, 4011, 4077, 4402
CaiI	CAGNNNCTG	4 cut(s)	923, 3391, 3625, 3868
CciI	TCATGA	2 cut(s)	1137, 3604
CfoI	GCGC	4 cut(s)	177, 768, 3624, 4009
Cfr10I	RCCGGY	2 cut(s)	3014, 3917
Cfr13I	GGNCC	5 cut(s)	50, 1417, 1468, 2084, 2723
CseI	GACGC	4 cut(s)	301, 369, 1772, 4527
CsiI	ACCWGGT	2 cut(s)	3753, 4408
Csp6I	GTAC	6 cut(s)	652, 1437, 3054, 3209, 4041, 4505
CviQI	GTAC	6 cut(s)	652, 1437, 3054, 3209, 4041, 4505
DinI	GGCGCC	1 cut(s)	176
DraI	TTTAAA	1 cut(s)	1425
EaeI	YGGCCR	2 cut(s)	1027, 1671
Eam1104I	CTCTTC	9 cut(s)	251, 428, 603, 1028, 2392, 3555, 4068, 4240, 4302
EarI	CTCTTC	9 cut(s)	251, 428, 603, 1028, 2392, 3555, 4068, 4240, 4302
EciI	GGCGGA	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	2385
Eco24I	GRGCYC	4 cut(s)	302, 2387, 2603, 4315
Eco32I	GATATC	1 cut(s)	1194
Eco47I	GGWCC	4 cut(s)	1417, 1468, 2084, 2723
Eco53kI	GAGCTC	1 cut(s)	2385
Eco57I	CTGAAG	8 cut(s)	1116, 1124, 2202, 2418, 2541, 2634, 3252, 3726
Eco81I	CCTNAGG	2 cut(s)	600, 620
Eco88I	CYCGRG	1 cut(s)	4143
EcoICRI	GAGCTC	1 cut(s)	2385
EcoRI	GAATTC	3 cut(s)	1545, 2056, 2621
EcoRV	GATATC	1 cut(s)	1194
EcoT22I	ATGCAT	1 cut(s)	3478
EcoT38I	GRGCYC	4 cut(s)	302, 2387, 2603, 4315
EgeI	GGCGCC	1 cut(s)	176
EheI	GGCGCC	1 cut(s)	176
FalI	AAGNNNNNCTT	6 cut(s)	1236, 1268, 1325, 1357, 2158, 2190
FaqI	GGGAC	4 cut(s)	1372, 2070, 2250, 4231
FauI	CCCGC	3 cut(s)	309, 579, 2417
FauNDI	CATATG	4 cut(s)	3337, 3510, 3517, 4263
FblI	GTMKAC	3 cut(s)	290, 338, 2485
FriOI	GRGCYC	4 cut(s)	302, 2387, 2603, 4315
FspBI	CTAG	9 cut(s)	137, 1646, 1932, 2904, 3102, 3423, 3948, 4401, 4467
GlaI	GCGC	4 cut(s)	176, 767, 3623, 4008
GsaI	CCCAGC	3 cut(s)	2453, 4092, 4172
GsuI	CTGGAG	5 cut(s)	849, 2031, 3719, 3849, 3968
HaeII	RGCGCY	2 cut(s)	178, 3625
HaeIII	GGCC	3 cut(s)	52, 1029, 1673
HapII	CCGG	7 cut(s)	48, 114, 675, 812, 980, 3015, 3918
HgaI	GACGC	4 cut(s)	301, 369, 1772, 4527
HhaI	GCGC	4 cut(s)	177, 768, 3624, 4009
Hin1I	GRCGYC	2 cut(s)	175, 380
Hin6I	GCGC	4 cut(s)	175, 766, 3622, 4007
HinP1I	GCGC	4 cut(s)	175, 766, 3622, 4007
HincII	GTYRAC	6 cut(s)	291, 339, 1237, 1951, 2911, 3264
HindII	GTYRAC	6 cut(s)	291, 339, 1237, 1951, 2911, 3264
HpaI	GTTAAC	2 cut(s)	1951, 3264
HpaII	CCGG	7 cut(s)	48, 114, 675, 812, 980, 3015, 3918
HphI	GGTGA	6 cut(s)	7, 789, 2811, 2970, 4166, 4307
Hpy99I	CGWCG	5 cut(s)	295, 340, 385, 388, 3678
HpyCH4IV	ACGT	5 cut(s)	201, 1762, 2512, 3171, 4527
HpySE526I	ACGT	5 cut(s)	201, 1762, 2512, 3171, 4527
Hsp92I	GRCGYC	2 cut(s)	175, 380
HspAI	GCGC	4 cut(s)	175, 766, 3622, 4007
KasI	GGCGCC	1 cut(s)	174
KspAI	GTTAAC	2 cut(s)	1951, 3264
LguI	GCTCTTC	3 cut(s)	428, 603, 2392
LmnI	GCTCC	4 cut(s)	394, 851, 2989, 4177
LweI	GCATC	9 cut(s)	1360, 2897, 3001, 3082, 3409, 3513, 3730, 3824, 3833
MabI	ACCWGGT	2 cut(s)	3753, 4408
MaeI	CTAG	9 cut(s)	137, 1646, 1932, 2904, 3102, 3423, 3948, 4401, 4467
MaeII	ACGT	5 cut(s)	201, 1762, 2512, 3171, 4527
MbiI	CCGCTC	1 cut(s)	586
MfeI	CAATTG	4 cut(s)	1838, 2691, 3963, 4454
MflI	RGATCY	6 cut(s)	1099, 1774, 1856, 1957, 2506, 3802
MhlI	GDGCHC	9 cut(s)	302, 1414, 1659, 1867, 2387, 2603, 4021, 4168, 4315
MlsI	TGGCCA	1 cut(s)	1029
MluNI	TGGCCA	1 cut(s)	1029
Mly113I	GGCGCC	1 cut(s)	175
MlyI	GAGTC	6 cut(s)	235, 1045, 1385, 2098, 2384, 4054
MmeI	TCCRAC	7 cut(s)	1713, 1896, 2132, 4129, 4207, 4301, 4350
Mox20I	TGGCCA	1 cut(s)	1029
Mph1103I	ATGCAT	1 cut(s)	3478
MscI	TGGCCA	1 cut(s)	1029
MslI	CAYNNNNRTG	3 cut(s)	1425, 1521, 2124
Msp20I	TGGCCA	1 cut(s)	1029
MspA1I	CMGCKG	2 cut(s)	304, 3868
MspI	CCGG	7 cut(s)	48, 114, 675, 812, 980, 3015, 3918
MunI	CAATTG	4 cut(s)	1838, 2691, 3963, 4454
Mva1269I	GAATGC	4 cut(s)	140, 1125, 1925, 4092
MvnI	CGCG	2 cut(s)	190, 4367
NarI	GGCGCC	1 cut(s)	175
NciI	CCSGG	2 cut(s)	49, 813
NdeI	CATATG	4 cut(s)	3337, 3510, 3517, 4263
NheI	GCTAGC	2 cut(s)	3947, 4400
NlaIV	GGNNCC	6 cut(s)	176, 1858, 2086, 2433, 2724, 4120
NmeAIII	GCCGAG	3 cut(s)	342, 356, 2034
NsiI	ATGCAT	1 cut(s)	3478
NspI	RCATGY	4 cut(s)	2079, 3500, 4017, 4494
NspV	TTCGAA	2 cut(s)	122, 353
OliI	CACNNNNGTG	1 cut(s)	2124
PagI	TCATGA	2 cut(s)	1137, 3604
PaqCI	CACCTGC	3 cut(s)	4006, 4012, 4030
PciI	ACATGT	1 cut(s)	4490
PciSI	GCTCTTC	3 cut(s)	428, 603, 2392
PcsI	WCGNNNNNNNCGW	4 cut(s)	320, 341, 350, 383
PctI	GAATGC	4 cut(s)	140, 1125, 1925, 4092
PflFI	GACNNNGTC	1 cut(s)	343
PfoI	TCCNGGA	1 cut(s)	835
PleI	GAGTC	6 cut(s)	235, 1044, 1384, 2098, 2383, 4054
PluTI	GGCGCC	1 cut(s)	178
PpsI	GAGTC	6 cut(s)	235, 1044, 1384, 2098, 2383, 4054
PscI	ACATGT	1 cut(s)	4490
PshBI	ATTAAT	2 cut(s)	6, 1698
PsiI	TTATAA	2 cut(s)	3761, 4305
Psp124BI	GAGCTC	1 cut(s)	2387
Psp1406I	AACGTT	1 cut(s)	201
PspFI	CCCAGC	3 cut(s)	2449, 4088, 4168
PspN4I	GGNNCC	6 cut(s)	176, 1858, 2086, 2433, 2724, 4120
PspPI	GGNCC	5 cut(s)	50, 1417, 1468, 2084, 2723
PsrI	GAACNNNNNNTAC	2 cut(s)	3156, 3188
PstI	CTGCAG	6 cut(s)	1182, 1213, 1326, 1800, 3946, 4333
PstNI	CAGNNNCTG	4 cut(s)	923, 3391, 3625, 3868
PsuI	RGATCY	6 cut(s)	1099, 1774, 1856, 1957, 2506, 3802
PsyI	GACNNNGTC	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	3868
RsaI	GTAC	6 cut(s)	653, 1438, 3055, 3210, 4042, 4506
RsaNI	GTAC	6 cut(s)	652, 1437, 3054, 3209, 4041, 4505
RseI	CAYNNNNRTG	3 cut(s)	1425, 1521, 2124
SacI	GAGCTC	1 cut(s)	2387
SalI	GTCGAC	2 cut(s)	289, 337
SapI	GCTCTTC	3 cut(s)	428, 603, 2392
Sau96I	GGNCC	5 cut(s)	50, 1417, 1468, 2084, 2723
SchI	GAGTC	6 cut(s)	235, 1045, 1385, 2098, 2384, 4054
SduI	GDGCHC	9 cut(s)	302, 1414, 1659, 1867, 2387, 2603, 4021, 4168, 4315
SexAI	ACCWGGT	2 cut(s)	3753, 4408
SfaNI	GCATC	9 cut(s)	1360, 2897, 3001, 3082, 3409, 3513, 3730, 3824, 3833
SfoI	GGCGCC	1 cut(s)	176
SfuI	TTCGAA	2 cut(s)	122, 353
SinI	GGWCC	4 cut(s)	1417, 1468, 2084, 2723
SmiI	ATTTAAAT	1 cut(s)	1425
SmiMI	CAYNNNNRTG	3 cut(s)	1425, 1521, 2124
SpeI	ACTAGT	2 cut(s)	1931, 3422
SspDI	GGCGCC	1 cut(s)	174
SspI	AATATT	2 cut(s)	99, 2644
SspMI	CTAG	9 cut(s)	137, 1646, 1932, 2904, 3102, 3423, 3948, 4401, 4467
SstI	GAGCTC	1 cut(s)	2387
SwaI	ATTTAAAT	1 cut(s)	1425
TaiI	ACGT	5 cut(s)	204, 1765, 2515, 3174, 4530
TaqI	TCGA	7 cut(s)	122, 290, 338, 353, 1381, 2229, 3818
TatI	WGTACW	3 cut(s)	651, 4040, 4504
TauI	GCSGC	2 cut(s)	55, 310
TscAI	CASTG	9 cut(s)	586, 665, 1331, 1800, 2205, 2637, 2875, 2991, 3027
TspGWI	ACGGA	3 cut(s)	709, 1075, 3737
TspRI	CASTG	9 cut(s)	586, 665, 1331, 1800, 2205, 2637, 2875, 2991, 3027
Tth111I	GACNNNGTC	1 cut(s)	343
VneI	GTGCAC	1 cut(s)	4017
VpaK11BI	GGWCC	4 cut(s)	1417, 1468, 2084, 2723
VspI	ATTAAT	2 cut(s)	6, 1698
XbaI	TCTAGA	1 cut(s)	1645
XceI	RCATGY	4 cut(s)	2079, 3500, 4017, 4494
XmiI	GTMKAC	3 cut(s)	290, 338, 2485
XspI	CTAG	9 cut(s)	137, 1646, 1932, 2904, 3102, 3423, 3948, 4401, 4467
Zsp2I	ATGCAT	1 cut(s)	3478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.