Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001065

Physical Location & Seq

Genomic Coordinates Forward (+)

64576781 .. 64592885

Gene Structure 16105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG408000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6270 bp

ATGCAGTTAAATATGGCGCATGATACACGATCTAGTCGGAAAGTCAAGGATGACGAAAGTACCAATTCAATTGGGAGGCAGATTAGTAGTAAAGGATCCAGCACTTCAGGCTCCTCAACGTCGGATACACCTGTCTTAAGGAGGTCTTCTAGAGAAACATTGTTGAAGAAAAACAACACTCTGAGCCCTTCTAGTACTCGGAAGTCTGAACGACTTGAGAAACAAACACCTGAAACTCCTCCAGTTAAGAGGAAATCTGAGAGATTTGAGAATAAGTCAACCCCGAGTCCTTTAAGGAGGTCCGAGAGAGGCAAGACTCACTCATCCACTTCTTCTGCATCCAAAACATCTGATAAAAGCTTGGATTCATCATCAATGAAGGGGAAAAGGGAAAAGAAAGAGAAGAGTGTGAAAGAATTGACTTTGGGAACTAAAGAACTTCGCAAAAGTGAGAAACAAAATGTAGGACCTGGGCAAGTCAAACAAAAAAGGTTGAACACTCGTGATTATATCGCATATCACCAAGGGCGCCTTAATGCACCAGATCATGTTCAGAAGCAGAGTGAAGAACGTGCACCTCCACCATGTTATAAGGCCATAACTGAAGAGATTAATCATGCACCTGAAAGGGTACCGGTGGATTGTGCTGCCATGGGAAATTCTAAGACGCCAGAGTTGGCAACTTCTACATCGAATGGAAGGATTTCTGATGTTCACACTGGCTCAGAAGGCAGTGACTGTATTACACCTTCTAAAAGAAAAAGGAAGATGGTTGATGGAGGATCTGATTATGCTGGAGTAAATGCAAGTAAAGATGTCTGCACAGGGGTTGATACTGTCTCGTCTTTGCCATCTGGGTCGACAGGAAATGTTCCAGTTGAAACCTGTGGTGTCTGTTTCAAGCGACAAAGGGTAGACAATGATTCAATGAAGCAGGAATGTTGCTCTTGTGGAACAAAACTGAATCAGGAGTTATCTGGTGCTGTAAATGAGCAAAAGGAGTTGTCTGCAGAACTCATAACAAATGGTGAAGAAAATAGTGAAAATACATGCCTCATTTGCACTTTTGGGGGGAAGCTCTTGTGCTGTGATGGAAAAGGATGCAAGAGAAGCTATCATCTTTCATGTCTAGATCCTCCTATGAATGCTGCTCCTATTGGAGTTTGGCACTGTTCTGTGTGTGTTAAGAAAAAGATAGAATCTGGTATACATTCCGTGTCAGATGGACAGGAGTCACTCAGGAATGCTAGACAAGTGGAGGTATCAGATGCTGATGATTTTTCCAGGTTTATAGAGTACTGGGTTCCTGTAGAGATATCGAATGTTCAGCGAGAGCTATACTGTGAAAAGCTACTGTTAAACCCCTCATTACTTCAGTCATCTTCAACAAAAGATCTCGTTGGAGCACTCCACGATCTACTTAGATCTACCCGAAAGTGCTGTGATCACCCTTACATTGAGGAAGCATCTTTACAAGAGAAGGTTATGGAATTTGAAGGCCTTCAAGCAATTGACAGTTTCGAAGTAAAAAAGAAAGCAATGTTGGATGCAGGAATAAAAGCTAGCGGCAAGCTTCACATTCTTGACATGATGCTTATGGAGATAAAGAATCGAGGTTTAAGAGTGCTAATCCTATTTCAGTCAATAGGTGGTCTGGGAATTTGTATAGGAGATATTTTGGATGATTTCCTGCGTCAAAGGTATGGTGAAGACTCTTATGAACGGGTTGAACAGGGTGTTGTTCCCGCTAAGAAAGGTGAGGCAATGGGCAAGTTTAACAATAAGGAATGTGGTAGGTTTGTGTTTTTATTGGAGACTCGTGCCTGTCGTGCCAGCATCAAACTATCGTCAGTTGATACTATTATTATATATGGTAGTGACTGGAACCCAGTGAATGATGTAAGAGCCTTGCAAAAGATATCACTTGATTCACAATTTGAGCAGATAAAAGTATTTCGCTTATATTCAACTTGTACCATAGAGGAGAAAGTTCTGATTCTGGCAAAGGAGGAAAAGATTCTTGATAGCAATTTGCTTAATATTACCAAGAATAATTGTCAACTGCTACTTTCGTGGGGTGCACCTTATCAATTTGTTAAACTGAATGAGTTCCATTGCCACAATTCGCCCGCCTCTAGTGAAAGTATCTTACCCGTAGAATCACCTCTGAAAGATGTCATCCAGGAATTTGTGTCCCTACTTTCTCAGGATGCCAAAAACAATGGCTTGGGTGGTTTCTCTGTTATCTCAAAAGCTCATCAAACTGGAGGAGGTTACAGTACGAAGAATCTGTTGTTTGGCGAATTGAAATCTCAACATATGGGTGATGGGAAACCACTTAGTTTTTGGATAAAACTGTGGGAGGGAAAGCATCCTCAGTGGAAATATTGTGTTGGTTTGTCCCAGAGGAACAGGAAAAGGGTAAAACATACTGATGAGGAGCTATCAAAGAAACCACAAGTTGAAAGTGATGAATCTGTAAAAAAACGGAAGAAGGTGGGAAATAGTAATAATGATTCGGCCAACTTAAAGCCTGGATTTGAGGGAAAATCAATCCCTGTATCTGAGGATGGAGCTTCTGTGACTCCAGCAGACAATGTGCCTCACTCTTCTTCTAGGTTATCTGCATTTGTAAATAATATAATTGGTGAAAACCGTGTTTGTACTTCACATAATTTTGCTAAAAGCACAAGACCAGAAAGTGACATGTTTGAATCTAAGGAGAGAAGAAAATTGCTTGATGCCCAAAAGAGTCTGCATCTTCATTTGAAGCCAGAGATATCAAAACTTTGTGGAATCCTACAACTCTCAGATCTTCACAAGGTTTGGGTTGAAAAGTTTCTTGAATATGTCATGAAGAATCACAATGTTACTAGAGAACCAGCAAACATATTGCAGGCATTTCAGATATCTCTGTGTTGGACTGTGGCTTCAATTCTGAAGCACAAAGTCGACCACAAAGAATCTTTTGCACGTGCTAAGCAGCATCTTAACTTCAATTGCCAAAAGGAAGAGGCGGACCGTGTTTATTCAATGCTACGGTGTCTGAAGAAAACGTTTCTATACCGCACAAGGAATTTTAAGGCTGCAGACCCTCCAAATTTCTCTGAACTCTCAAATAATGGTACAATTTCAAACTTGGAGGGGGTCAAATCAGGTGTTGAAGACTATCAGCTATATTTAGCAGGAAAAGATGTCTCAAAATGTATCAATGAAATTCAGAAAAAGTTCCAGAAGAAGATGAAAAAACTTGTTGAGAAGCAATCTGAAGAGAGAAGTGAACTTTTGAGATTATACGAGGAGCAAAAGGAGCAGCTCGAAATGAAGCACAAAATAGAGTTGGCTGTAAATCGAATTACTTCAATGAGTGCAGATAGTTTGAGGGTCAAGGAAACTGAATTTGAAAAGGAAATTGAAGAGCATAAACACAAGGTGGACATACATTTGCAGCTTCTCGAGAAATTGCAGCTGGAATCAAGGCTTAAGCTGAAAGAGAATGAGAACCAACGGGTAGAGGAAGTGCAAAAGTGGGTTCGTGATGAGTTGTTGAATAATTCACCTTCAAATGCACCTGATGAAACTGTAGCGTGTAGCAGTCCTCTTAGAAGAGTCACGACTCCAGCTAGACCGATTGTTGCAAATGGTGCACTTGATCCAATCACTTCTGAGGTTTTTTATAGTACTGGGAAAAACAAGGATGGCGTTTCTGGTGATAATCAAGCAAACGTTGCTACTGTGATTCCTTGTGCCAAAGAGCTGATGACTAATGGAGGCACTTCAGAAAATGGGGAGGCTCTGCTGGATGTCCCGGAAATTATCTGCTCTAGCAAAGTTGTCACCTCCGGTCTTCCTTCATTTGAAGAAAGGATTGACAAGTCTGACAAATCACCCATTTGTGATAGGGTTGTCAGACTGGAAGAGCCCATAACTGTCAGTCCACTGACTTTATCTGCTACAGAACAGAATCCTCATGGGGCTACATTAAGCATGGCTGACAGAGAGGCTCCACTGGAATTGCATGAGACCGTCAGTTCGATTCATGGGGTGCATGATGATGCGTCTGTGAACCCATGTGCATCTGAAGAACAAATCCGTGTGGCAACAGTAAACATACCAGGTAATATGGTTGAGTCGGCAGTGGATGCAACTGTCAGTTCGAATGATGCCCTACAGAATCCTCTCTCTAGGGTTCCGCCTGCAGAAATAGAAAATGGTGAAGTGCAAGTTACTGCATCTGATATTGCAACTGGGGTCAACCAGCAGAAAGGAGTTGATACTGAGTTATCGTCAGCTGCTCAGTCTGTTGCAACTATAGATTCTGAGCACTCAGACCATGAAGTGGCGACCAATGAGCCTTTAGTACCATCCTCGGAGACACCAGACCGTAGACCTCCTCAGTTATCTTCAGCTGCTGGAATTAAAAATCAGCCAAGTAGTGAGAACCGAGTTCAAGGTACCGTCTTGGCTGCATCGACTACAGGGCAAGATGGAAATGCACACACTAGCGAAAAGCAGAATACTTGCCTTCCTGTTGAAAATCTAGCGTCCCAATCTGTTGCGATCATAACATACGATCAATCTGATCATGAAGAGTCGGTGGCACAGTTATCTAATAGACCCGAGTTATCTTCAGCTTGTACAATTGAAGTTCATCAAAGTATCGAAAATCAAGACAGAGGTGTTCTGTTAGCCACATCCACAGCAGTACAAGATGGAGATGCACAAGCTACTGGGAATCAGAATACATGTCAACCAGTTGAAGATCGAGTATCCCAATTTGTTGCCACTGTAGAATCTGATCATGAAGGGCAGACGAATGCAGCTGTAGTACAATTGCAGCTTCCTGAGTCTGCAGCTGGTGGAATTGAAATTCGGCCAAGTAGGGTAGACCACACCTCTAACCAAGTTTCTCAGGCTCCACTGCAATTTGTTGAGAACTATTCTGTGCAATCAAATGAAACCGCTTTGCAGCCGGCACCAAGTCTTTCTTTGCGTCAGCCTATGGATATACCTACTAATGGATTTGGGCTGCCTTTTTCAGACACACGGGCTACTTCTGTAACTAATAGTCGTCCTATACATGCTGCTCCCCAGGGGACACTAAGGATGCCTCAGCATTCGTACCCTGATCCACTTCAAAATGAATTGGAAAGATTAAATAAAGATATGGAACAAAACATTAAGTCTCATGAAGATAAGAAGCTGCGTCTGAAATCTGATTATGACAAGAAAATAGAGGAGGCTGTTGCTGAACTTCGTCGGCAATGTGAGACTAAACTTCAGGAGGAAGAAGCCGAATTTCGGCATATACAGAAGGAACTAGATGCAAATTACAATAAAGTTTTAATGAATAAGATTTTGGCTGAGGCTTTCAGGTCTAAATGCATGGATCTTAAGGCATCAAGTGCATGCGGAGTGCAGCAAGATGGAAATTCTAGTTTTGTCCAGCAGCTGGTTCAGTTATCTATGCAGCAAAATGCACATAGGCCTTCTTCAGTTTCTAGTTCATCGTCAACCAGCCTTCCTGCAGCTAGCCTGCAGACTTCTATTGCACCCTTACCCAGCCAGCAGGCTTCTATTGCTCCAATACCCAGCCTGCAGACTTTTAGTGCACCCTTACCCAGCCAGCAGGCTTCTATTGCTCCAATACCCAGCCTGCAGACTTCTAGTGCACCCTTACCCAGCCTGCAAACGACCCTACCTGCATCTGCGATTGCACCTAGTCAGCATTACACAGCTCCAATCATGCAGACTGTTCCACTTTCCCCTGCTTCTCCGTCCATTCCAGCAAGACCCCCTCACATTGGTACCTTCTCTGGCTCCACAGGAATCCCTCAAGGTGGAGGTCAGATTCGTGCCCCAGCCCCACATCTCCAACCATTTAGGCCTTCAACTTCCGTTACAGGCACCAGTCCTCTGTCCCAGCAAGGTGGGATGTCAACTCCCCGTTCTCATAGCAACGGCCCTGCAACATCTTCATCACTTCCTCATATACCACAAATGCCAGCTCCCACACAACAAACTGTTCCCTCTAGTGAGGCCCAACATGTTGAAAGTGCAGGACGTAGCTCAACTCCTCATTCTGCATCTGCGTTGAAGTTGCTTATGGATATGGAGAATCGTTCTGGTGCAAATCGATCAGGTGGTTTGTTGCCACCACTGACTTCAAGTTCATTTAATCATCCTGATCCTGCCACTGCTAGTGCATCTGCCAACCCAGTAAATACAGGTGGAACCCCTGACGTAGTTTGTTTATCGGACGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006342 GO:0006344 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

Chromo Helicase_C SNF2_N

Protein Analysis

2089

Amino Acids

228.64

Weight (kDa)

6.37

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	527 - 635	3.1e-06	Helicase conserved C-terminal domain
MOM1	PF25029	914 - 1036	5.2e-56	MOM1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08060 AT1G08060 AT1G08060
fragaria_vesca	FvH4_3g31740 FvH4_3g31740 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540
malus_domestica	MD03G1121600.v1.1 MD11G1139900.v1.1 MD11G1140000.v1.1
prunus_persica	Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104700_v2.0.a1
pyrus_communis	pycom11g11560 pycom11g11580
rosa_chinensis	RchiOBHm_Chr4g0405411 RchiOBHm_Chr5g0058411
rosa_laevigata	RLG00000008844 RLG00000035218
rosa_multiflora	Rmu_sc0000367.1_g000115 Rmu_sc0000575.1_g000013
rosa_roxburghii	Rroxscaffold_1G00022120 Rroxscaffold_1G00022140 Rroxscaffold_5G00349880
rosa_rugosa	Rorug04G0059700 Rorug04G0059800 Rorug04G0059900 Rorug04G0060000 Rorug05G0313800 Rorug05G0313800 Rorug05G0313900 Rorug05G0314000 Rorug05G0314100
rosa_samantha	Rh4AG131700 Rh4BG126600 Rh4CG139100 Rh4DG125700 Rh5AG381300 Rh5BG392800 Rh5CG416900 Rh5DG408000
rosa_wichuraiana	Rw4G010660 Rw5G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	591
Acc36I	ACCTGC	1 cut(s)	5710
Acc65I	GGTACC	3 cut(s)	631, 4454, 5807
AccB1I	GGYRCC	6 cut(s)	528, 631, 4454, 4975, 5807, 5906
AccB7I	CCANNNNNTGG	2 cut(s)	4339, 5452
AccI	GTMKAC	6 cut(s)	860, 915, 1207, 2952, 4387, 4887
AciI	CCGC	8 cut(s)	1566, 1746, 2130, 3017, 3067, 4193, 4962, 5412
AclI	AACGTT	2 cut(s)	3056, 3726
AclWI	GGATC	8 cut(s)	90, 103, 790, 1127, 3647, 5123, 5397, 6182
AcoI	YGGCCR	2 cut(s)	2520, 4874
AcvI	CACGTG	1 cut(s)	2975
AcyI	GRCGYC	2 cut(s)	529, 668
AdeI	CACNNNGTG	1 cut(s)	3433
AfiI	CCNNNNNNNGG	6 cut(s)	4339, 5018, 5301, 5452, 5804, 5840
AflII	CTTAAG	3 cut(s)	136, 3482, 5393
AflIII	ACRYGT	3 cut(s)	2706, 4745, 6046
AgeI	ACCGGT	1 cut(s)	634
AjnI	CCWGG	6 cut(s)	469, 1283, 2181, 2533, 4114, 5091
AjuI	GAANNNNNNNTTGG	4 cut(s)	1526, 1558, 5342, 5374
Alw21I	GWGCWC	7 cut(s)	577, 1408, 2083, 3649, 4326, 5614, 5674
Alw26I	GTCTC	7 cut(s)	844, 1808, 3202, 4016, 4367, 5190, 5264
Alw44I	GTGCAC	5 cut(s)	573, 2079, 3645, 5610, 5670
AlwI	GGATC	8 cut(s)	90, 103, 790, 1127, 3647, 5123, 5397, 6182
AlwNI	CAGNNNCTG	4 cut(s)	738, 1271, 4412, 5452
Ama87I	CYCGRG	3 cut(s)	283, 3455, 4619
AoxI	GGCC	8 cut(s)	594, 1498, 2520, 4874, 5486, 5885, 5962, 6039
ApaLI	GTGCAC	5 cut(s)	573, 2079, 3645, 5610, 5670
ArsI	GACNNNNNNTTYG	2 cut(s)	4015, 4047
AseI	ATTAAT	1 cut(s)	612
AsiGI	ACCGGT	1 cut(s)	634
Asp700I	GAANNNNTTC	7 cut(s)	703, 1500, 2016, 2108, 2838, 3227, 3358
Asp718I	GGTACC	3 cut(s)	631, 4454, 5807
AspLEI	GCGC	2 cut(s)	19, 531
AspS9I	GGNCC	5 cut(s)	300, 467, 3019, 5963, 6040
AsuC2I	CCSGG	1 cut(s)	3809
AsuII	TTCGAA	2 cut(s)	1521, 4157
AsuNHI	GCTAGC	2 cut(s)	1562, 5531
AvaI	CYCGRG	3 cut(s)	283, 3455, 4619
AvaII	GGWCC	3 cut(s)	300, 467, 3019
BaeGI	GKGCMC	6 cut(s)	577, 2083, 3649, 5614, 5674, 5860
BaeI	ACNNNNGTAYC	6 cut(s)	43, 76, 117, 150, 5791, 5824
BamHI	GGATCC	1 cut(s)	95
BanI	GGYRCC	6 cut(s)	528, 631, 4454, 4975, 5807, 5906
BanII	GRGCYC	2 cut(s)	188, 3924
BarI	GAAGNNNNNNTAC	4 cut(s)	733, 765, 1455, 1487
BauI	CACGAG	2 cut(s)	501, 1818
BbrPI	CACGTG	1 cut(s)	2975
BbsI	GAAGAC	4 cut(s)	138, 1716, 3171, 3839
Bbv12I	GWGCWC	7 cut(s)	577, 1408, 2083, 3649, 4326, 5614, 5674
BbvCI	CCTCAGC	2 cut(s)	5112, 5364
BceAI	ACGGC	1 cut(s)	5977
BciT130I	CCWGG	6 cut(s)	471, 1285, 2183, 2535, 4116, 5093
BciVI	GTATCC	2 cut(s)	118, 4780
BclI	TGATCA	3 cut(s)	1444, 4582, 4798
BcnI	CCSGG	1 cut(s)	3809
BcoDI	GTCTC	7 cut(s)	844, 1808, 3202, 4016, 4367, 5190, 5264
BfoI	RGCGCY	1 cut(s)	532
BfrI	CTTAAG	3 cut(s)	136, 3482, 5393
BfuAI	ACCTGC	1 cut(s)	5710
BfuI	GTATCC	2 cut(s)	118, 4780
BglII	AGATCT	3 cut(s)	1393, 1424, 2812
BlpI	GCTNAGC	1 cut(s)	2979
BmcAI	AGTACT	3 cut(s)	196, 1298, 3682
Bme1390I	CCNGG	7 cut(s)	471, 1285, 2183, 2535, 3809, 4116, 5093
Bme18I	GGWCC	3 cut(s)	300, 467, 3019
BmeT110I	CYCGRG	3 cut(s)	283, 3455, 4619
BmgT120I	GGNCC	5 cut(s)	300, 467, 3019, 5963, 6040
BmrFI	CCNGG	7 cut(s)	471, 1285, 2183, 2535, 3809, 4116, 5093
BmrI	ACTGGG	6 cut(s)	1309, 1883, 3693, 4257, 4740, 6212
BmtI	GCTAGC	2 cut(s)	1566, 5535
BmuI	ACTGGG	6 cut(s)	1309, 1883, 3693, 4257, 4740, 6212
BoxI	GACNNNNGTC	1 cut(s)	1231
BpiI	GAAGAC	4 cut(s)	138, 1716, 3171, 3839
BpmI	CTGGAG	5 cut(s)	225, 816, 2286, 2571, 3603
Bpu10I	CCTNAGC	2 cut(s)	5112, 5364
Bpu1102I	GCTNAGC	1 cut(s)	2979
Bpu14I	TTCGAA	2 cut(s)	1521, 4157
BpuEI	CTTGAG	2 cut(s)	236, 5820
BpuMI	CCSGG	1 cut(s)	3809
Bsa29I	ATCGAT	1 cut(s)	6136
BsaAI	YACGTR	1 cut(s)	2975
BsaHI	GRCGYC	2 cut(s)	529, 668
BsaI	GGTCTC	1 cut(s)	4016
BsaJI	CCNNGG	6 cut(s)	470, 523, 651, 4368, 5091, 5092
BsaWI	WCCGGW	2 cut(s)	634, 3842
BsaXI	ACNNNNNCTCC	2 cut(s)	2565, 2595
Bsc4I	CCNNNNNNNGG	6 cut(s)	4339, 5018, 5301, 5452, 5804, 5840
Bse118I	RCCGGY	2 cut(s)	634, 4972
Bse3DI	GCAATG	4 cut(s)	1545, 1770, 2113, 5270
BseBI	CCWGG	6 cut(s)	471, 1285, 2183, 2535, 4116, 5093
BseCI	ATCGAT	1 cut(s)	6136
BseDI	CCNNGG	6 cut(s)	470, 523, 651, 4368, 5091, 5092
BseLI	CCNNNNNNNGG	6 cut(s)	4339, 5018, 5301, 5452, 5804, 5840
BseMI	GCAATG	4 cut(s)	1545, 1770, 2113, 5270
BseRI	GAGGAG	9 cut(s)	103, 228, 1997, 2283, 2453, 3314, 4383, 5252, 6066
BseSI	GKGCMC	6 cut(s)	577, 2083, 3649, 5614, 5674, 5860
BseYI	CCCAGC	7 cut(s)	5561, 5591, 5621, 5651, 5681, 5860, 5922
BsgI	GTGCAG	4 cut(s)	805, 3390, 5438, 6078
BshFI	GGCC	8 cut(s)	596, 1500, 2522, 4876, 5488, 5887, 5964, 6041
BshNI	GGYRCC	6 cut(s)	528, 631, 4454, 4975, 5807, 5906
BshTI	ACCGGT	1 cut(s)	634
BshVI	ATCGAT	1 cut(s)	6136
BsiHKAI	GWGCWC	7 cut(s)	577, 1408, 2083, 3649, 4326, 5614, 5674
BsiHKCI	CYCGRG	3 cut(s)	283, 3455, 4619
BsiSI	CCGG	4 cut(s)	635, 3809, 3843, 4973
BslFI	GGGAC	6 cut(s)	2179, 2386, 3791, 4531, 5110, 5905
BslI	CCNNNNNNNGG	6 cut(s)	4339, 5018, 5301, 5452, 5804, 5840
BsmAI	GTCTC	7 cut(s)	844, 1808, 3202, 4016, 4367, 5190, 5264
BsmFI	GGGAC	6 cut(s)	2179, 2386, 3791, 4531, 5110, 5905
BsmI	GAATGC	4 cut(s)	1150, 1249, 4822, 5116
BsnI	GGCC	8 cut(s)	596, 1500, 2522, 4876, 5488, 5887, 5964, 6041
Bso31I	GGTCTC	1 cut(s)	4016
BsoBI	CYCGRG	3 cut(s)	283, 3455, 4619
Bsp119I	TTCGAA	2 cut(s)	1521, 4157
Bsp1407I	TGTACA	1 cut(s)	4637
Bsp1720I	GCTNAGC	1 cut(s)	2979
Bsp19I	CCATGG	1 cut(s)	651
BspACI	CCGC	8 cut(s)	1566, 1746, 2130, 3017, 3067, 4193, 4962, 5412
BspANI	GGCC	8 cut(s)	596, 1500, 2522, 4876, 5488, 5887, 5964, 6041
BspDI	ATCGAT	1 cut(s)	6136
BspHI	TCATGA	4 cut(s)	2853, 4585, 4801, 5188
BspMAI	CTGCAG	8 cut(s)	1012, 3091, 4201, 4855, 5530, 5541, 5601, 5661
BspMI	ACCTGC	1 cut(s)	5710
BspOI	GCTAGC	2 cut(s)	1566, 5535
BspPI	GGATC	8 cut(s)	90, 103, 790, 1127, 3647, 5123, 5397, 6182
BspQI	GCTCTTC	2 cut(s)	3411, 3912
BspT104I	TTCGAA	2 cut(s)	1521, 4157
BspT107I	GGYRCC	6 cut(s)	528, 631, 4454, 4975, 5807, 5906
BspTI	CTTAAG	3 cut(s)	136, 3482, 5393
BspTNI	GGTCTC	1 cut(s)	4016
BsrDI	GCAATG	4 cut(s)	1545, 1770, 2113, 5270
BsrFI	RCCGGY	2 cut(s)	634, 4972
BsrGI	TGTACA	1 cut(s)	4637
BssAI	RCCGGY	2 cut(s)	634, 4972
BssECI	CCNNGG	6 cut(s)	470, 523, 651, 4368, 5091, 5092
BssNAI	GTATAC	1 cut(s)	1208
BssNI	GRCGYC	2 cut(s)	529, 668
BssSI	CACGAG	2 cut(s)	501, 1818
BssT1I	CCWWGG	2 cut(s)	523, 651
Bst1107I	GTATAC	1 cut(s)	1208
Bst2BI	CACGAG	2 cut(s)	501, 1818
Bst2UI	CCWGG	6 cut(s)	471, 1285, 2183, 2535, 4116, 5093
Bst6I	CTCTTC	9 cut(s)	398, 600, 2614, 3006, 3264, 3411, 3601, 3912, 4584
BstACI	GRCGYC	2 cut(s)	529, 668
BstAFI	CTTAAG	3 cut(s)	136, 3482, 5393
BstAPI	GCANNNNNTGC	4 cut(s)	3644, 3728, 4142, 5405
BstAUI	TGTACA	1 cut(s)	4637
BstBAI	YACGTR	1 cut(s)	2975
BstBI	TTCGAA	2 cut(s)	1521, 4157
BstDSI	CCRYGG	1 cut(s)	651
BstH2I	RGCGCY	1 cut(s)	532
BstHHI	GCGC	2 cut(s)	19, 531
BstMAI	GTCTC	7 cut(s)	844, 1808, 3202, 4016, 4367, 5190, 5264
BstNI	CCWGG	6 cut(s)	471, 1285, 2183, 2535, 4116, 5093
BstNSI	RCATGY	6 cut(s)	1053, 2710, 4749, 5084, 5412, 6050
BstPAI	GACNNNNGTC	1 cut(s)	1231
BstSCI	CCNGG	7 cut(s)	469, 1283, 2181, 2533, 3807, 4114, 5091
BstSLI	GKGCMC	6 cut(s)	577, 2083, 3649, 5614, 5674, 5860
BstV2I	GAAGAC	4 cut(s)	138, 1716, 3171, 3839
BstX2I	RGATCY	7 cut(s)	95, 782, 1132, 1393, 1424, 2812, 5389
BstXI	CCANNNNNNTGG	1 cut(s)	5930
BstYI	RGATCY	7 cut(s)	95, 782, 1132, 1393, 1424, 2812, 5389
BstZ17I	GTATAC	1 cut(s)	1208
Bsu15I	ATCGAT	1 cut(s)	6136
BsuI	GTATCC	2 cut(s)	118, 4780
BsuRI	GGCC	8 cut(s)	596, 1500, 2522, 4876, 5488, 5887, 5964, 6041
BsuTUI	ATCGAT	1 cut(s)	6136
BtgI	CCRYGG	1 cut(s)	651
BtsI	GCAGTG	4 cut(s)	739, 4143, 4919, 6195
BveI	ACCTGC	1 cut(s)	5710
CaiI	CAGNNNCTG	4 cut(s)	738, 1271, 4412, 5452
CciI	TCATGA	4 cut(s)	2853, 4585, 4801, 5188
CfoI	GCGC	2 cut(s)	19, 531
Cfr10I	RCCGGY	2 cut(s)	634, 4972
Cfr13I	GGNCC	5 cut(s)	300, 467, 3019, 5963, 6040
ClaI	ATCGAT	1 cut(s)	6136
CpoI	CGGWCCG	1 cut(s)	3019
CseI	GACGC	6 cut(s)	676, 1682, 4047, 4533, 4982, 5195
CsiI	ACCWGGT	1 cut(s)	4114
CspAI	ACCGGT	1 cut(s)	634
CspCI	CAANNNNNGTGG	2 cut(s)	3996, 4031
CspI	CGGWCCG	1 cut(s)	3019
DinI	GGCGCC	1 cut(s)	530
DraIII	CACNNNGTG	1 cut(s)	3433
EaeI	YGGCCR	2 cut(s)	2520, 4874
Eam1104I	CTCTTC	9 cut(s)	398, 600, 2614, 3006, 3264, 3411, 3601, 3912, 4584
EarI	CTCTTC	9 cut(s)	398, 600, 2614, 3006, 3264, 3411, 3601, 3912, 4584
EciI	GGCGGA	2 cut(s)	3032, 4182
Eco130I	CCWWGG	2 cut(s)	523, 651
Eco147I	AGGCCT	3 cut(s)	1500, 5488, 5887
Eco24I	GRGCYC	2 cut(s)	188, 3924
Eco31I	GGTCTC	1 cut(s)	4016
Eco32I	GATATC	4 cut(s)	1317, 1920, 2781, 2910
Eco47I	GGWCC	3 cut(s)	300, 467, 3019
Eco72I	CACGTG	1 cut(s)	2975
Eco88I	CYCGRG	3 cut(s)	283, 3455, 4619
EcoO109I	RGGNCCY	1 cut(s)	467
EcoRII	CCWGG	6 cut(s)	469, 1283, 2181, 2533, 4114, 5091
EcoRV	GATATC	4 cut(s)	1317, 1920, 2781, 2910
EcoT14I	CCWWGG	2 cut(s)	523, 651
EcoT22I	ATGCAT	1 cut(s)	5387
EcoT38I	GRGCYC	2 cut(s)	188, 3924
EgeI	GGCGCC	1 cut(s)	530
EheI	GGCGCC	1 cut(s)	530
ErhI	CCWWGG	2 cut(s)	523, 651
FalI	AAGNNNNNCTT	6 cut(s)	130, 162, 516, 548, 4972, 5004
FaqI	GGGAC	6 cut(s)	2179, 2386, 3791, 4531, 5110, 5905
FauI	CCCGC	2 cut(s)	1753, 2137
FauNDI	CATATG	1 cut(s)	2319
FbaI	TGATCA	3 cut(s)	1444, 4582, 4798
FblI	GTMKAC	6 cut(s)	860, 915, 1207, 2952, 4387, 4887
FriOI	GRGCYC	2 cut(s)	188, 3924
GlaI	GCGC	2 cut(s)	18, 530
GsaI	CCCAGC	7 cut(s)	5565, 5595, 5625, 5655, 5685, 5864, 5926
GsuI	CTGGAG	5 cut(s)	225, 816, 2286, 2571, 3603
HaeII	RGCGCY	1 cut(s)	532
HaeIII	GGCC	8 cut(s)	596, 1500, 2522, 4876, 5488, 5887, 5964, 6041
HapII	CCGG	4 cut(s)	635, 3809, 3843, 4973
HgaI	GACGC	6 cut(s)	676, 1682, 4047, 4533, 4982, 5195
HhaI	GCGC	2 cut(s)	19, 531
Hin1I	GRCGYC	2 cut(s)	529, 668
Hin6I	GCGC	2 cut(s)	17, 529
HinP1I	GCGC	2 cut(s)	17, 529
HincII	GTYRAC	8 cut(s)	279, 861, 2060, 2953, 4255, 4751, 5514, 5940
HindII	GTYRAC	8 cut(s)	279, 861, 2060, 2953, 4255, 4751, 5514, 5940
HindIII	AAGCTT	2 cut(s)	358, 1571
HpaII	CCGG	4 cut(s)	635, 3809, 3843, 4973
Hpy99I	CGWCG	2 cut(s)	124, 5262
HpyCH4IV	ACGT	7 cut(s)	119, 571, 2974, 3056, 3726, 6064, 6243
HpySE526I	ACGT	7 cut(s)	119, 571, 2974, 3056, 3726, 6064, 6243
Hsp92I	GRCGYC	2 cut(s)	529, 668
HspAI	GCGC	2 cut(s)	17, 529
KasI	GGCGCC	1 cut(s)	528
KpnI	GGTACC	3 cut(s)	635, 4458, 5811
KroI	GCCGGC	1 cut(s)	4972
KroNI	GCCGGC	1 cut(s)	4974
Ksp22I	TGATCA	3 cut(s)	1444, 4582, 4798
LguI	GCTCTTC	2 cut(s)	3411, 3912
MabI	ACCWGGT	1 cut(s)	4114
MaeII	ACGT	7 cut(s)	119, 571, 2974, 3056, 3726, 6064, 6243
MfeI	CAATTG	5 cut(s)	69, 1509, 2998, 4641, 4832
MflI	RGATCY	7 cut(s)	95, 782, 1132, 1393, 1424, 2812, 5389
Mly113I	GGCGCC	1 cut(s)	529
MmeI	TCCRAC	6 cut(s)	17, 102, 1381, 1524, 2900, 5899
Mph1103I	ATGCAT	1 cut(s)	5387
MroNI	GCCGGC	1 cut(s)	4972
MroXI	GAANNNNTTC	7 cut(s)	703, 1500, 2016, 2108, 2838, 3227, 3358
MslI	CAYNNNNRTG	3 cut(s)	2322, 2433, 4053
MspA1I	CMGCKG	6 cut(s)	3469, 4292, 4409, 4823, 4856, 5452
MspCI	CTTAAG	3 cut(s)	136, 3482, 5393
MspI	CCGG	4 cut(s)	635, 3809, 3843, 4973
MspR9I	CCNGG	7 cut(s)	471, 1285, 2183, 2535, 3809, 4116, 5093
MunI	CAATTG	5 cut(s)	69, 1509, 2998, 4641, 4832
Mva1269I	GAATGC	4 cut(s)	1150, 1249, 4822, 5116
MvaI	CCWGG	6 cut(s)	471, 1285, 2183, 2535, 4116, 5093
NaeI	GCCGGC	1 cut(s)	4974
NarI	GGCGCC	1 cut(s)	529
NciI	CCSGG	1 cut(s)	3809
NcoI	CCATGG	1 cut(s)	651
NdeI	CATATG	1 cut(s)	2319
NgoMIV	GCCGGC	1 cut(s)	4972
NheI	GCTAGC	2 cut(s)	1562, 5531
NmuCI	GTSAC	7 cut(s)	734, 1233, 1877, 2581, 2702, 3610, 3835
NsiI	ATGCAT	1 cut(s)	5387
NspI	RCATGY	6 cut(s)	1053, 2710, 4749, 5084, 5412, 6050
NspV	TTCGAA	2 cut(s)	1521, 4157
PaeI	GCATGC	1 cut(s)	5412
PaeR7I	CTCGAG	1 cut(s)	3455
PagI	TCATGA	4 cut(s)	2853, 4585, 4801, 5188
PasI	CCCWGGG	1 cut(s)	5092
PceI	AGGCCT	3 cut(s)	1500, 5488, 5887
PciI	ACATGT	3 cut(s)	2706, 4745, 6046
PciSI	GCTCTTC	2 cut(s)	3411, 3912
PcsI	WCGNNNNNNNCGW	1 cut(s)	1825
PctI	GAATGC	4 cut(s)	1150, 1249, 4822, 5116
PdiI	GCCGGC	1 cut(s)	4974
PdmI	GAANNNNTTC	7 cut(s)	703, 1500, 2016, 2108, 2838, 3227, 3358
PflMI	CCANNNNNTGG	2 cut(s)	4339, 5452
PfoI	TCCNGGA	2 cut(s)	2181, 3807
PinAI	ACCGGT	1 cut(s)	634
PluTI	GGCGCC	1 cut(s)	532
PmaCI	CACGTG	1 cut(s)	2975
PmlI	CACGTG	1 cut(s)	2975
Ppu21I	YACGTR	1 cut(s)	2975
PpuMI	RGGWCCY	1 cut(s)	467
PscI	ACATGT	3 cut(s)	2706, 4745, 6046
PshAI	GACNNNNGTC	1 cut(s)	1231
PshBI	ATTAAT	1 cut(s)	612
PsiI	TTATAA	1 cut(s)	591
Psp1406I	AACGTT	2 cut(s)	3056, 3726
Psp5II	RGGWCCY	1 cut(s)	467
Psp6I	CCWGG	6 cut(s)	469, 1283, 2181, 2533, 4114, 5091
PspCI	CACGTG	1 cut(s)	2975
PspFI	CCCAGC	7 cut(s)	5561, 5591, 5621, 5651, 5681, 5860, 5922
PspGI	CCWGG	6 cut(s)	469, 1283, 2181, 2533, 4114, 5091
PspPI	GGNCC	5 cut(s)	300, 467, 3019, 5963, 6040
PspPPI	RGGWCCY	1 cut(s)	467
PstI	CTGCAG	8 cut(s)	1012, 3091, 4201, 4855, 5530, 5541, 5601, 5661
PstNI	CAGNNNCTG	4 cut(s)	738, 1271, 4412, 5452
PsuI	RGATCY	7 cut(s)	95, 782, 1132, 1393, 1424, 2812, 5389
PvuII	CAGCTG	6 cut(s)	3469, 4292, 4409, 4823, 4856, 5452
RseI	CAYNNNNRTG	3 cut(s)	2322, 2433, 4053
Rsr2I	CGGWCCG	1 cut(s)	3019
RsrII	CGGWCCG	1 cut(s)	3019
SalI	GTCGAC	2 cut(s)	859, 2951
SapI	GCTCTTC	2 cut(s)	3411, 3912
Sau96I	GGNCC	5 cut(s)	300, 467, 3019, 5963, 6040
ScaI	AGTACT	3 cut(s)	196, 1298, 3682
ScrFI	CCNGG	7 cut(s)	471, 1285, 2183, 2535, 3809, 4116, 5093
SexAI	ACCWGGT	1 cut(s)	4114
SfoI	GGCGCC	1 cut(s)	530
Sfr274I	CTCGAG	1 cut(s)	3455
SfuI	TTCGAA	2 cut(s)	1521, 4157
SinI	GGWCC	3 cut(s)	300, 467, 3019
SlaI	CTCGAG	1 cut(s)	3455
SmiMI	CAYNNNNRTG	3 cut(s)	2322, 2433, 4053
SmlI	CTYRAG	6 cut(s)	136, 215, 3455, 3482, 5393, 5835
SmoI	CTYRAG	6 cut(s)	136, 215, 3455, 3482, 5393, 5835
SphI	GCATGC	1 cut(s)	5412
SseBI	AGGCCT	3 cut(s)	1500, 5488, 5887
SsiI	CCGC	8 cut(s)	1566, 1746, 2130, 3017, 3067, 4193, 4962, 5412
SspDI	GGCGCC	1 cut(s)	528
SspI	AATATT	2 cut(s)	2041, 2387
StuI	AGGCCT	3 cut(s)	1500, 5488, 5887
StyD4I	CCNGG	7 cut(s)	469, 1283, 2181, 2533, 3807, 4114, 5091
StyI	CCWWGG	2 cut(s)	523, 651
TaiI	ACGT	7 cut(s)	122, 574, 2977, 3059, 3729, 6067, 6246
TaqII	GACCGA	1 cut(s)	3643
TatI	WGTACW	7 cut(s)	194, 1296, 2663, 3680, 4637, 4705, 4828
TauI	GCSGC	1 cut(s)	1569
TseFI	GTSAC	7 cut(s)	734, 1233, 1877, 2581, 2702, 3610, 3835
Tsp45I	GTSAC	7 cut(s)	734, 1233, 1877, 2581, 2702, 3610, 3835
TspGWI	ACGGA	5 cut(s)	1204, 2503, 4082, 5766, 5887
Van91I	CCANNNNNTGG	2 cut(s)	4339, 5452
Vha464I	CTTAAG	3 cut(s)	136, 3482, 5393
VneI	GTGCAC	5 cut(s)	573, 2079, 3645, 5610, 5670
VpaK11BI	GGWCC	3 cut(s)	300, 467, 3019
VspI	ATTAAT	1 cut(s)	612
XbaI	TCTAGA	2 cut(s)	149, 1129
XceI	RCATGY	6 cut(s)	1053, 2710, 4749, 5084, 5412, 6050
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2343
XhoI	CTCGAG	1 cut(s)	3455
XmiI	GTMKAC	6 cut(s)	860, 915, 1207, 2952, 4387, 4887
XmnI	GAANNNNTTC	7 cut(s)	703, 1500, 2016, 2108, 2838, 3227, 3358
ZrmI	AGTACT	3 cut(s)	196, 1298, 3682
Zsp2I	ATGCAT	1 cut(s)	5387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.