helicase protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MOM1 | PF25029 | 43 - 159 | 1.1e-43 | MOM1-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 313 |
| Acc65I | GGTACC | 4 cut(s) | 3194, 3656, 4127, 4307 |
| AccB1I | GGYRCC | 6 cut(s) | 1247, 3194, 3295, 3656, 4127, 4307 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 4583 |
| AccI | GTMKAC | 4 cut(s) | 2482, 3169, 3631, 4102 |
| AccII | CGCG | 1 cut(s) | 3758 |
| AciI | CCGC | 4 cut(s) | 1289, 2872, 2961, 3756 |
| AclWI | GGATC | 4 cut(s) | 1597, 1828, 2796, 4594 |
| AcoI | YGGCCR | 1 cut(s) | 2940 |
| AcuI | CTGAAG | 8 cut(s) | 30, 344, 1359, 1758, 1869, 1920, 2010, 4518 |
| AdeI | CACNNNGTG | 2 cut(s) | 3398, 3860 |
| AflIII | ACRYGT | 2 cut(s) | 90, 408 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4412 |
| AhlI | ACTAGT | 1 cut(s) | 3377 |
| AjnI | CCWGG | 9 cut(s) | 732, 2014, 2127, 3049, 3267, 3511, 3729, 3979, 4200 |
| Alw26I | GTCTC | 9 cut(s) | 468, 567, 619, 1553, 1784, 2607, 2678, 3267, 3729 |
| AlwI | GGATC | 4 cut(s) | 1597, 1828, 2796, 4594 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 203, 430, 2155 |
| Ama87I | CYCGRG | 1 cut(s) | 2778 |
| AoxI | GGCC | 9 cut(s) | 158, 986, 1665, 2940, 3052, 3471, 3514, 3939, 3982 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 3221, 3253, 4154, 4186 |
| AseI | ATTAAT | 1 cut(s) | 2759 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 225, 644, 1377, 3276, 3738, 4209 |
| Asp718I | GGTACC | 4 cut(s) | 3194, 3656, 4127, 4307 |
| AspLEI | GCGC | 5 cut(s) | 604, 1130, 3760, 4231, 4548 |
| AspS9I | GGNCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4414 |
| AsuC2I | CCSGG | 2 cut(s) | 1027, 3293 |
| AsuHPI | GGTGA | 8 cut(s) | 1958, 2042, 2130, 3071, 3243, 3533, 3705, 4001 |
| AsuII | TTCGAA | 1 cut(s) | 769 |
| AvaI | CYCGRG | 1 cut(s) | 2778 |
| AvaII | GGWCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4414 |
| BaeGI | GKGCMC | 2 cut(s) | 2127, 4078 |
| BalI | TGGCCA | 1 cut(s) | 2942 |
| BanI | GGYRCC | 6 cut(s) | 1247, 3194, 3295, 3656, 4127, 4307 |
| BanII | GRGCYC | 2 cut(s) | 967, 4224 |
| BauI | CACGAG | 1 cut(s) | 966 |
| BbsI | GAAGAC | 7 cut(s) | 111, 855, 1349, 2346, 3121, 3583, 4054 |
| BciT130I | CCWGG | 9 cut(s) | 734, 2016, 2129, 3051, 3269, 3513, 3731, 3981, 4202 |
| BciVI | GTATCC | 1 cut(s) | 1837 |
| BclI | TGATCA | 4 cut(s) | 1216, 3334, 3796, 4267 |
| BcnI | CCSGG | 2 cut(s) | 1027, 3293 |
| BcoDI | GTCTC | 9 cut(s) | 468, 567, 619, 1553, 1784, 2607, 2678, 3267, 3729 |
| BcuI | ACTAGT | 1 cut(s) | 3377 |
| BfaI | CTAG | 6 cut(s) | 1424, 1493, 1703, 2921, 3378, 4621 |
| BfoI | RGCGCY | 3 cut(s) | 1131, 4232, 4549 |
| BfuI | GTATCC | 1 cut(s) | 1837 |
| BglII | AGATCT | 2 cut(s) | 1746, 2501 |
| Bme18I | GGWCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4414 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4412 |
| BmeT110I | CYCGRG | 1 cut(s) | 2778 |
| BmgT120I | GGNCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4414 |
| BmsI | GCATC | 8 cut(s) | 190, 379, 505, 988, 1399, 2245, 2854, 4502 |
| BpiI | GAAGAC | 7 cut(s) | 111, 855, 1349, 2346, 3121, 3583, 4054 |
| BpmI | CTGGAG | 9 cut(s) | 1095, 1336, 1527, 1926, 2859, 3210, 3672, 4143, 4356 |
| Bpu14I | TTCGAA | 1 cut(s) | 769 |
| BpuEI | CTTGAG | 3 cut(s) | 143, 872, 2582 |
| BpuMI | CCSGG | 2 cut(s) | 1027, 3293 |
| BsaAI | YACGTR | 1 cut(s) | 409 |
| BsaI | GGTCTC | 1 cut(s) | 1553 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1668, 1698, 3031, 3061, 3493, 3523, 3961, 3991 |
| Bse3DI | GCAATG | 4 cut(s) | 317, 423, 1725, 2379 |
| BseBI | CCWGG | 9 cut(s) | 734, 2016, 2129, 3051, 3269, 3513, 3731, 3981, 4202 |
| BseGI | GGATG | 4 cut(s) | 145, 616, 1309, 4245 |
| BseMI | GCAATG | 4 cut(s) | 317, 423, 1725, 2379 |
| BseMII | CTCAG | 6 cut(s) | 143, 210, 996, 1149, 2078, 2505 |
| BseRI | GAGGAG | 7 cut(s) | 3091, 3495, 3498, 3553, 4024, 4368, 4383 |
| BseSI | GKGCMC | 2 cut(s) | 2127, 4078 |
| BseYI | CCCAGC | 1 cut(s) | 4225 |
| BsgI | GTGCAG | 2 cut(s) | 996, 2259 |
| Bsh1236I | CGCG | 1 cut(s) | 3758 |
| BshFI | GGCC | 9 cut(s) | 160, 988, 1667, 2942, 3054, 3473, 3516, 3941, 3984 |
| BshNI | GGYRCC | 6 cut(s) | 1247, 3194, 3295, 3656, 4127, 4307 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2778 |
| BsiSI | CCGG | 3 cut(s) | 1026, 3293, 4467 |
| BslFI | GGGAC | 3 cut(s) | 1077, 3342, 4400 |
| BsmAI | GTCTC | 9 cut(s) | 468, 567, 619, 1553, 1784, 2607, 2678, 3267, 3729 |
| BsmBI | CGTCTC | 2 cut(s) | 3267, 3729 |
| BsmFI | GGGAC | 3 cut(s) | 1077, 3342, 4400 |
| BsmI | GAATGC | 2 cut(s) | 1379, 1975 |
| BsnI | GGCC | 9 cut(s) | 160, 988, 1667, 2942, 3054, 3473, 3516, 3941, 3984 |
| Bso31I | GGTCTC | 1 cut(s) | 1553 |
| BsoBI | CYCGRG | 1 cut(s) | 2778 |
| Bsp119I | TTCGAA | 1 cut(s) | 769 |
| Bsp1286I | GDGCHC | 4 cut(s) | 967, 2127, 4078, 4224 |
| Bsp19I | CCATGG | 1 cut(s) | 2209 |
| BspACI | CCGC | 4 cut(s) | 1289, 2872, 2961, 3756 |
| BspANI | GGCC | 9 cut(s) | 160, 988, 1667, 2942, 3054, 3473, 3516, 3941, 3984 |
| BspCNI | CTCAG | 6 cut(s) | 142, 209, 997, 1150, 2077, 2504 |
| BspFNI | CGCG | 1 cut(s) | 3758 |
| BspHI | TCATGA | 9 cut(s) | 1576, 1807, 2605, 2848, 3211, 3337, 3799, 4144, 4270 |
| BspMAI | CTGCAG | 9 cut(s) | 313, 426, 460, 1519, 2098, 2956, 3349, 3811, 4282 |
| BspPI | GGATC | 4 cut(s) | 1597, 1828, 2796, 4594 |
| BspQI | GCTCTTC | 1 cut(s) | 4488 |
| BspT104I | TTCGAA | 1 cut(s) | 769 |
| BspT107I | GGYRCC | 6 cut(s) | 1247, 3194, 3295, 3656, 4127, 4307 |
| BspTNI | GGTCTC | 1 cut(s) | 1553 |
| BsrDI | GCAATG | 4 cut(s) | 317, 423, 1725, 2379 |
| BssSI | CACGAG | 1 cut(s) | 966 |
| BssT1I | CCWWGG | 6 cut(s) | 1954, 2163, 2209, 3583, 4054, 4410 |
| Bst2BI | CACGAG | 1 cut(s) | 966 |
| Bst2UI | CCWGG | 9 cut(s) | 734, 2016, 2129, 3051, 3269, 3513, 3731, 3981, 4202 |
| Bst4CI | ACNGT | 7 cut(s) | 1441, 1535, 1778, 1882, 2135, 2543, 4457 |
| Bst6I | CTCTTC | 7 cut(s) | 714, 2535, 2572, 3109, 3571, 4042, 4488 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1209 |
| BstBAI | YACGTR | 1 cut(s) | 409 |
| BstBI | TTCGAA | 1 cut(s) | 769 |
| BstC8I | GCNNGC | 7 cut(s) | 282, 913, 1084, 2266, 2739, 2959, 4479 |
| BstDEI | CTNAG | 7 cut(s) | 129, 196, 1005, 1158, 2064, 2083, 2491 |
| BstDSI | CCRYGG | 1 cut(s) | 2209 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2723 |
| BstF5I | GGATG | 4 cut(s) | 145, 616, 1309, 4245 |
| BstFNI | CGCG | 1 cut(s) | 3758 |
| BstH2I | RGCGCY | 3 cut(s) | 1131, 4232, 4549 |
| BstHHI | GCGC | 5 cut(s) | 604, 1130, 3760, 4231, 4548 |
| BstMAI | GTCTC | 9 cut(s) | 468, 567, 619, 1553, 1784, 2607, 2678, 3267, 3729 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1136, 1209, 2195, 4228 |
| BstNI | CCWGG | 9 cut(s) | 734, 2016, 2129, 3051, 3269, 3513, 3731, 3981, 4202 |
| BstNSI | RCATGY | 3 cut(s) | 94, 1086, 1685 |
| BstSLI | GKGCMC | 2 cut(s) | 2127, 4078 |
| BstUI | CGCG | 1 cut(s) | 3758 |
| BstV2I | GAAGAC | 7 cut(s) | 111, 855, 1349, 2346, 3121, 3583, 4054 |
| BstX2I | RGATCY | 4 cut(s) | 1602, 1746, 2501, 2788 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2210 |
| BstYI | RGATCY | 4 cut(s) | 1602, 1746, 2501, 2788 |
| BsuI | GTATCC | 1 cut(s) | 1837 |
| BsuRI | GGCC | 9 cut(s) | 160, 988, 1667, 2942, 3054, 3473, 3516, 3941, 3984 |
| BtgI | CCRYGG | 1 cut(s) | 2209 |
| BtsCI | GGATG | 4 cut(s) | 145, 616, 1309, 4245 |
| BtsI | GCAGTG | 2 cut(s) | 431, 1419 |
| BtsIMutI | CAGTG | 9 cut(s) | 431, 1419, 1540, 1551, 1650, 2180, 2981, 3011, 4453 |
| Cac8I | GCNNGC | 7 cut(s) | 282, 913, 1084, 2266, 2739, 2959, 4479 |
| CaiI | CAGNNNCTG | 3 cut(s) | 203, 430, 2155 |
| CciI | TCATGA | 9 cut(s) | 1576, 1807, 2605, 2848, 3211, 3337, 3799, 4144, 4270 |
| CfoI | GCGC | 5 cut(s) | 604, 1130, 3760, 4231, 4548 |
| Cfr13I | GGNCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4414 |
| CseI | GACGC | 3 cut(s) | 303, 863, 1584 |
| DdeI | CTNAG | 7 cut(s) | 129, 196, 1005, 1158, 2064, 2083, 2491 |
| DraIII | CACNNNGTG | 2 cut(s) | 3398, 3860 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 313 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4412 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 313 |
| EaeI | YGGCCR | 1 cut(s) | 2940 |
| Eam1104I | CTCTTC | 7 cut(s) | 714, 2535, 2572, 3109, 3571, 4042, 4488 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4412 |
| EarI | CTCTTC | 7 cut(s) | 714, 2535, 2572, 3109, 3571, 4042, 4488 |
| Eco130I | CCWWGG | 6 cut(s) | 1954, 2163, 2209, 3583, 4054, 4410 |
| Eco24I | GRGCYC | 2 cut(s) | 967, 4224 |
| Eco31I | GGTCTC | 1 cut(s) | 1553 |
| Eco32I | GATATC | 1 cut(s) | 294 |
| Eco47I | GGWCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4414 |
| Eco57I | CTGAAG | 8 cut(s) | 30, 344, 1359, 1758, 1869, 1920, 2010, 4518 |
| Eco88I | CYCGRG | 1 cut(s) | 2778 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2723 |
| EcoO109I | RGGNCCY | 1 cut(s) | 139 |
| EcoRI | GAATTC | 2 cut(s) | 3892, 4363 |
| EcoRII | CCWGG | 9 cut(s) | 732, 2014, 2127, 3049, 3267, 3511, 3729, 3979, 4200 |
| EcoRV | GATATC | 1 cut(s) | 294 |
| EcoT14I | CCWWGG | 6 cut(s) | 1954, 2163, 2209, 3583, 4054, 4410 |
| EcoT38I | GRGCYC | 2 cut(s) | 967, 4224 |
| ErhI | CCWWGG | 6 cut(s) | 1954, 2163, 2209, 3583, 4054, 4410 |
| Esp3I | CGTCTC | 2 cut(s) | 3267, 3729 |
| FaqI | GGGAC | 3 cut(s) | 1077, 3342, 4400 |
| FauI | CCCGC | 1 cut(s) | 3763 |
| FbaI | TGATCA | 4 cut(s) | 1216, 3334, 3796, 4267 |
| FblI | GTMKAC | 4 cut(s) | 2482, 3169, 3631, 4102 |
| FokI | GGATG | 4 cut(s) | 132, 623, 1316, 4252 |
| FriOI | GRGCYC | 2 cut(s) | 967, 4224 |
| FspBI | CTAG | 6 cut(s) | 1424, 1493, 1703, 2921, 3378, 4621 |
| GlaI | GCGC | 5 cut(s) | 603, 1129, 3759, 4230, 4547 |
| GsaI | CCCAGC | 1 cut(s) | 4229 |
| GsuI | CTGGAG | 9 cut(s) | 1095, 1336, 1527, 1926, 2859, 3210, 3672, 4143, 4356 |
| HaeII | RGCGCY | 3 cut(s) | 1131, 4232, 4549 |
| HaeIII | GGCC | 9 cut(s) | 160, 988, 1667, 2942, 3054, 3473, 3516, 3941, 3984 |
| HapII | CCGG | 3 cut(s) | 1026, 3293, 4467 |
| HgaI | GACGC | 3 cut(s) | 303, 863, 1584 |
| HhaI | GCGC | 5 cut(s) | 604, 1130, 3760, 4231, 4548 |
| Hin6I | GCGC | 5 cut(s) | 602, 1128, 3758, 4229, 4546 |
| HinP1I | GCGC | 5 cut(s) | 602, 1128, 3758, 4229, 4546 |
| HincII | GTYRAC | 2 cut(s) | 2288, 2869 |
| HindII | GTYRAC | 2 cut(s) | 2288, 2869 |
| HindIII | AAGCTT | 1 cut(s) | 2262 |
| HpaII | CCGG | 3 cut(s) | 1026, 3293, 4467 |
| HphI | GGTGA | 8 cut(s) | 1958, 2042, 2130, 3071, 3243, 3533, 3705, 4001 |
| Hpy99I | CGWCG | 1 cut(s) | 3724 |
| HpyCH4III | ACNGT | 7 cut(s) | 1441, 1535, 1778, 1882, 2135, 2543, 4457 |
| HpyCH4IV | ACGT | 1 cut(s) | 408 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1136, 1209, 2195, 4228 |
| HpyF3I | CTNAG | 7 cut(s) | 129, 196, 1005, 1158, 2064, 2083, 2491 |
| HpySE526I | ACGT | 1 cut(s) | 408 |
| HspAI | GCGC | 5 cut(s) | 602, 1128, 3758, 4229, 4546 |
| KpnI | GGTACC | 4 cut(s) | 3198, 3660, 4131, 4311 |
| Ksp22I | TGATCA | 4 cut(s) | 1216, 3334, 3796, 4267 |
| LguI | GCTCTTC | 1 cut(s) | 4488 |
| LmnI | GCTCC | 3 cut(s) | 1546, 3013, 4381 |
| LweI | GCATC | 8 cut(s) | 190, 379, 505, 988, 1399, 2245, 2854, 4502 |
| MaeI | CTAG | 6 cut(s) | 1424, 1493, 1703, 2921, 3378, 4621 |
| MaeII | ACGT | 1 cut(s) | 408 |
| MfeI | CAATTG | 4 cut(s) | 382, 680, 2621, 2876 |
| MflI | RGATCY | 4 cut(s) | 1602, 1746, 2501, 2788 |
| MhlI | GDGCHC | 4 cut(s) | 967, 2127, 4078, 4224 |
| MlsI | TGGCCA | 1 cut(s) | 2942 |
| MluNI | TGGCCA | 1 cut(s) | 2942 |
| MlyI | GAGTC | 6 cut(s) | 470, 764, 1016, 1931, 2291, 2336 |
| MmeI | TCCRAC | 2 cut(s) | 284, 2719 |
| Mox20I | TGGCCA | 1 cut(s) | 2942 |
| MroXI | GAANNNNTTC | 6 cut(s) | 225, 644, 1377, 3276, 3738, 4209 |
| MscI | TGGCCA | 1 cut(s) | 2942 |
| Msp20I | TGGCCA | 1 cut(s) | 2942 |
| MspA1I | CMGCKG | 2 cut(s) | 901, 1055 |
| MspI | CCGG | 3 cut(s) | 1026, 3293, 4467 |
| MunI | CAATTG | 4 cut(s) | 382, 680, 2621, 2876 |
| Mva1269I | GAATGC | 2 cut(s) | 1379, 1975 |
| MvaI | CCWGG | 9 cut(s) | 734, 2016, 2129, 3051, 3269, 3513, 3731, 3981, 4202 |
| MvnI | CGCG | 1 cut(s) | 3758 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1136, 1209, 2195, 4228 |
| NciI | CCSGG | 2 cut(s) | 1027, 3293 |
| NcoI | CCATGG | 1 cut(s) | 2209 |
| NspI | RCATGY | 3 cut(s) | 94, 1086, 1685 |
| NspV | TTCGAA | 1 cut(s) | 769 |
| PaeI | GCATGC | 1 cut(s) | 1086 |
| PagI | TCATGA | 9 cut(s) | 1576, 1807, 2605, 2848, 3211, 3337, 3799, 4144, 4270 |
| PasI | CCCWGGG | 1 cut(s) | 2015 |
| PciI | ACATGT | 1 cut(s) | 90 |
| PciSI | GCTCTTC | 1 cut(s) | 4488 |
| PctI | GAATGC | 2 cut(s) | 1379, 1975 |
| PdmI | GAANNNNTTC | 6 cut(s) | 225, 644, 1377, 3276, 3738, 4209 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 4583 |
| PfoI | TCCNGGA | 3 cut(s) | 3267, 3729, 4200 |
| PleI | GAGTC | 6 cut(s) | 469, 763, 1015, 1930, 2291, 2336 |
| PpsI | GAGTC | 6 cut(s) | 469, 763, 1015, 1930, 2291, 2336 |
| Ppu21I | YACGTR | 1 cut(s) | 409 |
| PpuMI | RGGWCCY | 1 cut(s) | 139 |
| PscI | ACATGT | 1 cut(s) | 90 |
| PshBI | ATTAAT | 1 cut(s) | 2759 |
| Psp5II | RGGWCCY | 1 cut(s) | 139 |
| Psp6I | CCWGG | 9 cut(s) | 732, 2014, 2127, 3049, 3267, 3511, 3729, 3979, 4200 |
| PspFI | CCCAGC | 1 cut(s) | 4225 |
| PspGI | CCWGG | 9 cut(s) | 732, 2014, 2127, 3049, 3267, 3511, 3729, 3979, 4200 |
| PspPI | GGNCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4414 |
| PspPPI | RGGWCCY | 1 cut(s) | 139 |
| PstI | CTGCAG | 9 cut(s) | 313, 426, 460, 1519, 2098, 2956, 3349, 3811, 4282 |
| PstNI | CAGNNNCTG | 3 cut(s) | 203, 430, 2155 |
| PsuI | RGATCY | 4 cut(s) | 1602, 1746, 2501, 2788 |
| PvuII | CAGCTG | 2 cut(s) | 901, 1055 |
| SapI | GCTCTTC | 1 cut(s) | 4488 |
| Sau96I | GGNCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4414 |
| SchI | GAGTC | 6 cut(s) | 470, 764, 1016, 1931, 2291, 2336 |
| SduI | GDGCHC | 4 cut(s) | 967, 2127, 4078, 4224 |
| SfaNI | GCATC | 8 cut(s) | 190, 379, 505, 988, 1399, 2245, 2854, 4502 |
| SfuI | TTCGAA | 1 cut(s) | 769 |
| SinI | GGWCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4414 |
| SmlI | CTYRAG | 3 cut(s) | 122, 887, 2597 |
| SmoI | CTYRAG | 3 cut(s) | 122, 887, 2597 |
| SpeI | ACTAGT | 1 cut(s) | 3377 |
| SphI | GCATGC | 1 cut(s) | 1086 |
| SsiI | CCGC | 4 cut(s) | 1289, 2872, 2961, 3756 |
| SspMI | CTAG | 6 cut(s) | 1424, 1493, 1703, 2921, 3378, 4621 |
| StyI | CCWWGG | 6 cut(s) | 1954, 2163, 2209, 3583, 4054, 4410 |
| TaaI | ACNGT | 7 cut(s) | 1441, 1535, 1778, 1882, 2135, 2543, 4457 |
| TaiI | ACGT | 1 cut(s) | 411 |
| TaqI | TCGA | 8 cut(s) | 28, 769, 3062, 3524, 3569, 3992, 4515, 4589 |
| TaqII | GACCGA | 1 cut(s) | 3830 |
| TatI | WGTACW | 3 cut(s) | 238, 437, 1568 |
| TscAI | CASTG | 9 cut(s) | 431, 1419, 1540, 1551, 1650, 2187, 2988, 3018, 4460 |
| TspGWI | ACGGA | 5 cut(s) | 1819, 3355, 3817, 4252, 4288 |
| TspRI | CASTG | 9 cut(s) | 431, 1419, 1540, 1551, 1650, 2187, 2988, 3018, 4460 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 4583 |
| VpaK11BI | GGWCC | 6 cut(s) | 139, 505, 1119, 1457, 1951, 4414 |
| VspI | ATTAAT | 1 cut(s) | 2759 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2723 |
| XbaI | TCTAGA | 1 cut(s) | 1492 |
| XceI | RCATGY | 3 cut(s) | 94, 1086, 1685 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2309, 2935 |
| XmiI | GTMKAC | 4 cut(s) | 2482, 3169, 3631, 4102 |
| XmnI | GAANNNNTTC | 6 cut(s) | 225, 644, 1377, 3276, 3738, 4209 |
| XspI | CTAG | 6 cut(s) | 1424, 1493, 1703, 2921, 3378, 4621 |