Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001065

Physical Location & Seq

Genomic Coordinates Forward (+)

20459875 .. 20472222

Gene Structure 12348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG125700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4884 bp

ATGCAAGGAATCCCACCTGATGTCTTGGCTGCACATTATGGAGAGGAAGAATACGACGCCCCGTCAAAAATGGCTAAATGGAAATCCCATCAACTCAGCTTTTTGGTGGTGTGGTGCCAGGTTCACTGGGGATATATCCTCCCTAACCACGTTTTGAAATGCGGCCAATATACAATTCATCGGTCCCAATGCCTCATAACGGTTGGCAAGTTGCACCCCGTCCCCAGCCTTGGATTGTTCAAGTTCAACCCACATCCTTGGTTAATGGCTTGTGTAAATAAAATAATTGATCGAAGCTCTGCCTCTACTTCAGATAATTTGGGTAGAAATATCATAGCAACACCAGAAGATAACATGTTTGAATTTGAAGAGAGAATAAAATTGCTTGAGGCTCAGAAGAAGGACCTCCATCCTCTTTTGAGGCCAGACACAATAAAACTATGTGGAATCCTACAACTCTCAGATGCTGCCAAGATTTTCGTTGAACTGCTTCTTGAATATGTACTCAATAACCACCTTATTAAAAGAGAATTAACAATGTTGCAGGCATTTCAGATATCTCTGTGTTGGACTGCAGCGTCATTGCTGAAGCAGAAAGTCAATCACAAAGAATCCCTTGCCTGTGCGAAGAAGCATCTTAACTTCAATTGCAATAAGGACGAGGTGGACTACGTGTATGCAATGCTGCAGTGTCTGAAAAGTACAGCATATTTTAAGGCTGCAGAGTCTCCAAAATTTGCTGAATCATCTTGTAGATGTCCTTTGAAGGACCATTCAGATGCAAAGGTTTCTCACTCTGTCACTTGCAAATTCCACAAGGTCACATCAGAGAATGGAGACTTGTCACTAAATCAAGAATATATAGCACAAAAGGATGTCTCAAAGAGTATCAAACAAATTCAGAAAAAGTTCCAAAAGAAGATGAAAAAATTTAATGATAAGCAATTGAAAGAGAGAAGTGAAATTTTGAGAAGTTACAAGGAAGAGAAGGAAAACCTGGAATTTAAGCACAAAATAGAGTCCATTGTTATTCGAACTTGTTTGTGGAGAAATATATTGCTCAAAAAAGGTAAGCCTAAAATGTGGGAAATTGAACAAGAAAAAGAAGTGGAAGACCATAAACACCAAATGGAAATGCATCTTGAACATCTCAAGAAATTGCAGCTGGAAGCAGCAAGTAAGTTAAAGAAGAAGGAGGACACATGGGTAGAAGAATTGAAAAGATGGGCTCATGATGAATTGTTTTATAGGCCATCTTTAGATGCACCTGAGTCTGCACATAGCATGACCGGGGGAGTGATGGAATTGTCTAAAACAGCTGATTATGTTACTGATAAAGCTGTAGCATGCAGTCATCCCATTACAGCAACAACTCCAGCTTGGTCCATTAGCGCCAATTCTGCATTAGATACAATGACTTCTGAGGCTGGTTTATTTACTGATGTTATGGGGAAGAACAATTCTGGCAAGTCTTGTCATGATCAAGAGAATTTTGTATCTGTAAACTCTTGTGCCAAAAACTTTATTACTATTGGAGGCACTTCTGACAATGCGGAGGTTCTGCTGGATGTTACTGAAATCTGCTCTACTGCTGCTCTAACTGAAGCTATAACCTCCAGTCTTCCTTCATTTGATGAATGCCTTCACAATACAAATCCATTACCCATTTCTGATGCAGTGGTCAGACTAGAAGTGGCTGAAACTGTCAATTCAGTTGATGGTCCACAGCGACCCCTTCTTTTGAATCTGACATCTCTAGAACAGAATCCTAATGGTGCTGCAGTAAGTGTTCCTGACAGTGAGGCTCCAGTGGGATTGCATGAGACCATCAGTACAGGTCATGATTTGTGTACTGTTGCGTCCGAGATCCCACCTTCATGTGAGGAACAAGCTCATGTAATCAATCCAGTGACTATGCAAGATAAAGAGGCCAAAACGGGAGTGCATGTCATGTTAGATGATGACCTAGAGAATCTTGTTGCAATGGATTTACCTTCATCTGAAGAACAGATCTCCAAAAGTGCCACAGAAAAGGAGAACAGTCAAGTGCATGACACTATCAGTTCAAGTCATGATTTGCATAATGTTGTATCCGTGTTCCCACCTTCATCTGAAGGACGAAATCTTATGATGAGCATAGCAACTGTGCAAGATAAAGAGGCTGAAGCTGGAGTGCTTGATAAAGAGTCCAATGACTATGCAAGTTTGGGTGAGGACCAAGGGAATCTTGTCAATGTGCATTCATCTTCATCTGAAGAAAAAATCGCTGAAAGCACCTCAGGGAAACTGAATGGTGAAGCACAGATTTTGGCTTCTGATAGTGCAACTCAGGTCAATCAGCAGAACTTAGTTGATTCTGCAGTCAATGGAAACTCTAATCAGGAAATGCCCCTGGACAGTTCACCCTCGGTACAGCCTCTGATAGCCTTGGTTCTTGGTGGTTCACTGACAGCACATCAGGCAGACCAAGACCATGGTACTGATATGTTAGCCACATCAAGTGCAGCACAAGATGGAGATGCACAAGCTTGCGTAAATCAGAATACTTGTCAACCTATGGACTCCCATTTCCACGATGGAATTGAATTTCTGCCAAGTAGTGAAGACTCTGACTTTAATCAAGTTACCCATGTTGCAATGCAATTTAATGCGAACCTCCCTGCTTTTTCAGAACAAACTGGTTTGCAACCTCTGACAAGTTTTTCCTTGAATCAGCCATCTTATGTACCTACTAATGGCTTTGGTCTACCTTTCTCAGACACAAGATCTACATTTGTTACATCTAATTTGCCTCTTCCTTTCAACTGTGATTTGCTTCAAAAGGAATTGGAAAGATTGGGAAGAGAAAGAGAAGAAAACCTCAAGTCTCATGAAAATAAAAAGCTGCAATTGAAATCTGATATGGAGAAGGGGATAGAGGAATTGAAAGCTGAAATTTGTCAAGAGTATGAGACTGAACTCCAACAGATAGAGGCAGAATTTTTCCTTAAAAAGGAAGATTTGCTTGCAGTTCACGGAAAAGTATTAATCCATACGATGTTGGCTCGGGCATGGGATCTGGCTTTCAAGTCCATTGGCAAGGATAATACAGGTTCAAGTTCATCTGGAGTGCATCATGATGGGAATTTTGCTGTTGACCGCCAACTGGTTCAGTCATGTATGCAGCAAAATGCACAAATGCCTTCTCTAGTTTCCAATTCATCTTTGGCCAACCCTCCTGCAGCTTGCAGACAGACAACCCCACTTGCACTGGCAACCAGTCCACACTATGCAGCTCCACTGATACAGAATGTTGATCTTTTGCCTACTCCGTCTCCTGGCCTTTCTTCGACCAATGCAGCAAGTCACCCCCACATCGGTTCCTTCTCCTCTTCAACAGGAAGAACCCAAGGTAGAGTTGAGATTCGTTCGCCTCTCCCACATCTTCAACCTCGTAGACCTTCAACACCCTTTACTGGAGGTACCAGTCCTTTCTGTCATGAAGATGGGTCATCAAATCAGCAGTCACATAGAAGCTCACCTTCATCGTCTCTCCCGGAACTTTTTCTCACACAAACCCCGGCACCCGCACAGATGTCTGTTCCATATAATATGGGACATGATCATGAAACTGCAGGGGAACCTTCAATATCCGTTACTGGTACCAGTCCTGTCTATCCACAATGTGAAGTTATATCAAATCAGCAGCCACATAGGAATTTCCCTCCATCACTTTCATCTCATAGGCAACGACCTTTGGCCTTCACACAACAATTTGATCTTTTGCCTACTCCTCCTGGACTTTCTTTGACCAATGCAGCAAGTCACCCCCACATCGGTTCCTTCTCCTCTTCGACAGGAAGACCCCAAGGTAGAGTTGAGATTCGTTCGCCTCTCCCACATCTTCAACCTCGTAGACCTTCAACACCCTTGACTGGAGGTAACAGTCCTTTCTCTCATAAAGATGGGTCATCGAATCAGCAGTCACATAGAAGCTCACCTTCGTCGTCTCTCCTGGAACTTTTTCTCACACAACCCCCCGCGCCCACACAGATGTTTGTTCCCTATAATATAGAACATGATCGTGAAACTGCAGGGGAACCTTCAATATCCGTTACTGGTACCGGTCTTGTCTATCCACAATGTGAAGTTATATCAAATCAGCAGCCACATAGGAATTCCCCTCCATCTCCCTTACTTTCATCTCATACTCAACGACCTTTGGCCTCCACACAACAATTTGATCTTTTGCCTACTCCTTCTCCTGGCCTTTCTTCGACCAATGCAGCAAGTCACCCCCACATCGGTTCCTTCTCCTCTTCAACAGGAAGATCCCAAGGTAGAGTTGAGATTCGTGCCCCTCCCCCACATCTTCAACCTCGTAGACTTTCAACACCTTTTACTGGAGGTACCAGTCCTTTCTCTCATGAGGATGGGTCATCAAATCAGCAGTCACATAGAAACTCACTTTCGTCATCTCTCCTGGAAGTTTTTCTCACACAGCCCCCAGCGCCCACACGGATGTCTGTTCCCTATAATATGGAACATGATCATGAAACTGCAGAGGAACCTTCAATATCCGTTACTGGTACCAGTCCTGTCTATCAACAATGTAGGGTTATATCAAATCAGCAGCCAGATAGGAATTCCCCTCCAGCTCCTCCATTACTTTCTCCTCATACCCAACGACCCTGGGTCCCCACACAACAAATTGTTCCTGATAATATAGTCCATCACCGTGAAAGTGCCGGAGGATTGCCAGCTCTTCGTAGTGCATCAGCATTGGAGTTGCTTATCGACATGAGCAATCAATCTTCAGGTAGTTGGCGCTCAACACAGAATAGTTCAGGACTTGAACCATCTGGTGGATCCACAGATGTAGTTTGTTTATCAGATGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006342 GO:0006344 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

1627

Amino Acids

178.35

Weight (kDa)

5.71

Isoelectric Point (pI)

58.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOM1	PF25029	131 - 247	1.1e-43	MOM1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08060 AT1G08060 AT1G08060
fragaria_vesca	FvH4_3g31740 FvH4_3g31740 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540
malus_domestica	MD03G1121600.v1.1 MD11G1139900.v1.1 MD11G1140000.v1.1
prunus_persica	Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104700_v2.0.a1
pyrus_communis	pycom11g11560 pycom11g11580
rosa_chinensis	RchiOBHm_Chr4g0405411 RchiOBHm_Chr5g0058411
rosa_laevigata	RLG00000008844 RLG00000035218
rosa_multiflora	Rmu_sc0000367.1_g000115 Rmu_sc0000575.1_g000013
rosa_roxburghii	Rroxscaffold_1G00022120 Rroxscaffold_1G00022140 Rroxscaffold_5G00349880
rosa_rugosa	Rorug04G0059700 Rorug04G0059800 Rorug04G0059900 Rorug04G0060000 Rorug05G0313800 Rorug05G0313800 Rorug05G0313900 Rorug05G0314000 Rorug05G0314100
rosa_samantha	Rh4AG131700 Rh4BG126600 Rh4CG139100 Rh4DG125700 Rh5AG381300 Rh5BG392800 Rh5CG416900 Rh5DG408000
rosa_wichuraiana	Rw4G010660 Rw5G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	577
Acc65I	GGTACC	5 cut(s)	3461, 3641, 4100, 4388, 4568
AccB1I	GGYRCC	7 cut(s)	114, 3461, 3562, 3641, 4100, 4388, 4568
AccB7I	CCANNNNNTGG	1 cut(s)	4844
AccI	GTMKAC	4 cut(s)	2746, 3436, 3895, 4363
AccII	CGCG	1 cut(s)	4022
AciI	CCGC	5 cut(s)	162, 1553, 3139, 3567, 4020
AclWI	GGATC	5 cut(s)	1861, 3063, 4305, 4842, 4855
AcoI	YGGCCR	2 cut(s)	163, 3207
AcuI	CTGAAG	8 cut(s)	294, 608, 1623, 2022, 2133, 2184, 2274, 4779
AcyI	GRCGYC	1 cut(s)	57
AdeI	CACNNNGTG	2 cut(s)	3665, 4124
AflIII	ACRYGT	2 cut(s)	354, 672
AgeI	ACCGGT	1 cut(s)	4103
AhdI	GACNNNNNGTC	2 cut(s)	61, 4673
AjnI	CCWGG	9 cut(s)	117, 996, 2391, 3316, 3775, 3993, 4243, 4461, 4670
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
Alw26I	GTCTC	9 cut(s)	732, 831, 883, 1817, 2871, 2945, 3318, 3534, 3993
AlwI	GGATC	5 cut(s)	1861, 3063, 4305, 4842, 4855
AlwNI	CAGNNNCTG	3 cut(s)	467, 694, 2419
Ama87I	CYCGRG	1 cut(s)	3045
AoxI	GGCC	9 cut(s)	163, 422, 1250, 1929, 3207, 3319, 3738, 4203, 4246
ArsI	GACNNNNNNTTYG	6 cut(s)	3488, 3520, 3947, 3979, 4415, 4447
AseI	ATTAAT	1 cut(s)	3026
AsiGI	ACCGGT	1 cut(s)	4103
Asp700I	GAANNNNTTC	6 cut(s)	489, 908, 1641, 3543, 4002, 4470
Asp718I	GGTACC	5 cut(s)	3461, 3641, 4100, 4388, 4568
AspLEI	GCGC	4 cut(s)	1394, 4024, 4492, 4809
AspS9I	GGNCC	7 cut(s)	183, 403, 769, 1383, 1721, 2215, 4675
AsuC2I	CCSGG	3 cut(s)	1291, 3536, 3560
AsuHPI	GGTGA	9 cut(s)	2222, 2306, 2394, 3338, 3510, 3797, 3969, 4265, 4706
AsuII	TTCGAA	1 cut(s)	1033
AvaI	CYCGRG	1 cut(s)	3045
AvaII	GGWCC	7 cut(s)	183, 403, 769, 1383, 1721, 2215, 4675
AxyI	CCTNAGG	1 cut(s)	2278
BaeGI	GKGCMC	1 cut(s)	4339
BalI	TGGCCA	1 cut(s)	3209
BamHI	GGATCC	1 cut(s)	4847
BanI	GGYRCC	7 cut(s)	114, 3461, 3562, 3641, 4100, 4388, 4568
BanII	GRGCYC	1 cut(s)	1231
BbsI	GAAGAC	4 cut(s)	1119, 1613, 2610, 3847
BciT130I	CCWGG	9 cut(s)	119, 998, 2393, 3318, 3777, 3995, 4245, 4463, 4672
BciVI	GTATCC	1 cut(s)	2101
BclI	TGATCA	3 cut(s)	1480, 3601, 4528
BcnI	CCSGG	3 cut(s)	1291, 3536, 3560
BcoDI	GTCTC	9 cut(s)	732, 831, 883, 1817, 2871, 2945, 3318, 3534, 3993
BfaI	CTAG	4 cut(s)	1688, 1757, 1967, 3188
BfoI	RGCGCY	3 cut(s)	1395, 4493, 4810
BfuI	GTATCC	1 cut(s)	2101
BglII	AGATCT	2 cut(s)	2010, 2765
Bme18I	GGWCC	7 cut(s)	183, 403, 769, 1383, 1721, 2215, 4675
BmeRI	GACNNNNNGTC	2 cut(s)	61, 4673
BmeT110I	CYCGRG	1 cut(s)	3045
BmgT120I	GGNCC	7 cut(s)	183, 403, 769, 1383, 1721, 2215, 4675
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	9 cut(s)	454, 643, 769, 1147, 1252, 1663, 2509, 3121, 4763
BmuI	ACTGGG	1 cut(s)	136
BpiI	GAAGAC	4 cut(s)	1119, 1613, 2610, 3847
BpmI	CTGGAG	9 cut(s)	1359, 1600, 1791, 2190, 3126, 3477, 3936, 4404, 4617
Bpu14I	TTCGAA	1 cut(s)	1033
BpuEI	CTTGAG	3 cut(s)	407, 1136, 2846
BpuMI	CCSGG	3 cut(s)	1291, 3536, 3560
BsaAI	YACGTR	1 cut(s)	673
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	1817
BsaWI	WCCGGW	1 cut(s)	4103
BsaXI	ACNNNNNCTCC	6 cut(s)	1932, 1962, 3298, 3328, 4225, 4255
Bse118I	RCCGGY	1 cut(s)	4103
Bse21I	CCTNAGG	1 cut(s)	2278
Bse3DI	GCAATG	4 cut(s)	581, 687, 1989, 2643
BseBI	CCWGG	9 cut(s)	119, 998, 2393, 3318, 3777, 3995, 4245, 4463, 4672
BseGI	GGATG	7 cut(s)	253, 409, 880, 1354, 1573, 4417, 4506
BseMI	GCAATG	4 cut(s)	581, 687, 1989, 2643
BseMII	CTCAG	8 cut(s)	109, 407, 474, 1260, 1413, 2292, 2342, 2769
BseRI	GAGGAG	6 cut(s)	3358, 3762, 3817, 4285, 4629, 4644
BseSI	GKGCMC	1 cut(s)	4339
BseYI	CCCAGC	2 cut(s)	224, 4486
BsgI	GTGCAG	3 cut(s)	15, 1260, 2523
Bsh1236I	CGCG	1 cut(s)	4022
BshFI	GGCC	9 cut(s)	165, 424, 1252, 1931, 3209, 3321, 3740, 4205, 4248
BshNI	GGYRCC	7 cut(s)	114, 3461, 3562, 3641, 4100, 4388, 4568
BshTI	ACCGGT	1 cut(s)	4103
BsiHKCI	CYCGRG	1 cut(s)	3045
BsiSI	CCGG	5 cut(s)	1290, 3536, 3560, 4104, 4728
BslFI	GGGAC	4 cut(s)	169, 206, 3609, 4661
BsmAI	GTCTC	9 cut(s)	732, 831, 883, 1817, 2871, 2945, 3318, 3534, 3993
BsmBI	CGTCTC	3 cut(s)	3318, 3534, 3993
BsmFI	GGGAC	4 cut(s)	169, 206, 3609, 4661
BsmI	GAATGC	2 cut(s)	1643, 2239
BsnI	GGCC	9 cut(s)	165, 424, 1252, 1931, 3209, 3321, 3740, 4205, 4248
Bso31I	GGTCTC	1 cut(s)	1817
BsoBI	CYCGRG	1 cut(s)	3045
Bsp119I	TTCGAA	1 cut(s)	1033
Bsp1286I	GDGCHC	2 cut(s)	1231, 4339
Bsp19I	CCATGG	1 cut(s)	2473
BspACI	CCGC	5 cut(s)	162, 1553, 3139, 3567, 4020
BspANI	GGCC	9 cut(s)	165, 424, 1252, 1931, 3209, 3321, 3740, 4205, 4248
BspCNI	CTCAG	8 cut(s)	108, 406, 473, 1261, 1414, 2291, 2341, 2768
BspFNI	CGCG	1 cut(s)	4022
BspMAI	CTGCAG	9 cut(s)	577, 690, 724, 1783, 2362, 3223, 3616, 4075, 4543
BspPI	GGATC	5 cut(s)	1861, 3063, 4305, 4842, 4855
BspQI	GCTCTTC	1 cut(s)	4749
BspT104I	TTCGAA	1 cut(s)	1033
BspT107I	GGYRCC	7 cut(s)	114, 3461, 3562, 3641, 4100, 4388, 4568
BspTNI	GGTCTC	1 cut(s)	1817
BsrDI	GCAATG	4 cut(s)	581, 687, 1989, 2643
BsrFI	RCCGGY	1 cut(s)	4103
BssAI	RCCGGY	1 cut(s)	4103
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	8 cut(s)	229, 257, 2218, 2427, 2473, 3388, 3847, 4315
Bst2UI	CCWGG	9 cut(s)	119, 998, 2393, 3318, 3777, 3995, 4245, 4463, 4672
Bst6I	CTCTTC	8 cut(s)	363, 978, 2799, 2836, 3376, 3835, 4303, 4749
BstACI	GRCGYC	1 cut(s)	57
BstBAI	YACGTR	1 cut(s)	673
BstBI	TTCGAA	1 cut(s)	1033
BstC8I	GCNNGC	6 cut(s)	546, 1348, 2530, 3006, 3226, 4740
BstDEI	CTNAG	9 cut(s)	95, 393, 460, 1269, 1422, 2278, 2328, 2347, 2755
BstDSI	CCRYGG	1 cut(s)	2473
BstENI	CCTNNNNNAGG	1 cut(s)	2990
BstF5I	GGATG	7 cut(s)	253, 409, 880, 1354, 1573, 4417, 4506
BstFNI	CGCG	1 cut(s)	4022
BstH2I	RGCGCY	3 cut(s)	1395, 4493, 4810
BstHHI	GCGC	4 cut(s)	1394, 4024, 4492, 4809
BstMAI	GTCTC	9 cut(s)	732, 831, 883, 1817, 2871, 2945, 3318, 3534, 3993
BstMWI	GCNNNNNNNGC	3 cut(s)	1400, 2459, 4489
BstNI	CCWGG	9 cut(s)	119, 998, 2393, 3318, 3777, 3995, 4245, 4463, 4672
BstNSI	RCATGY	3 cut(s)	358, 1350, 1949
BstSLI	GKGCMC	1 cut(s)	4339
BstUI	CGCG	1 cut(s)	4022
BstV2I	GAAGAC	4 cut(s)	1119, 1613, 2610, 3847
BstX2I	RGATCY	6 cut(s)	1866, 2010, 2765, 3055, 4310, 4847
BstXI	CCANNNNNNTGG	2 cut(s)	258, 2474
BstYI	RGATCY	6 cut(s)	1866, 2010, 2765, 3055, 4310, 4847
Bsu36I	CCTNAGG	1 cut(s)	2278
BsuI	GTATCC	1 cut(s)	2101
BsuRI	GGCC	9 cut(s)	165, 424, 1252, 1931, 3209, 3321, 3740, 4205, 4248
BtgI	CCRYGG	1 cut(s)	2473
BtsCI	GGATG	7 cut(s)	253, 409, 880, 1354, 1573, 4417, 4506
BtsI	GCAGTG	2 cut(s)	695, 1683
BtsIMutI	CAGTG	9 cut(s)	124, 695, 1683, 1804, 1815, 1914, 2444, 3248, 3278
Cac8I	GCNNGC	6 cut(s)	546, 1348, 2530, 3006, 3226, 4740
CaiI	CAGNNNCTG	3 cut(s)	467, 694, 2419
CfoI	GCGC	4 cut(s)	1394, 4024, 4492, 4809
Cfr10I	RCCGGY	1 cut(s)	4103
Cfr13I	GGNCC	7 cut(s)	183, 403, 769, 1383, 1721, 2215, 4675
CseI	GACGC	3 cut(s)	65, 567, 1848
CspAI	ACCGGT	1 cut(s)	4103
DdeI	CTNAG	9 cut(s)	95, 393, 460, 1269, 1422, 2278, 2328, 2347, 2755
DraIII	CACNNNGTG	2 cut(s)	3665, 4124
DrdI	GACNNNNNNGTC	1 cut(s)	577
DriI	GACNNNNNGTC	2 cut(s)	61, 4673
DseDI	GACNNNNNNGTC	1 cut(s)	577
EaeI	YGGCCR	2 cut(s)	163, 3207
Eam1104I	CTCTTC	8 cut(s)	363, 978, 2799, 2836, 3376, 3835, 4303, 4749
Eam1105I	GACNNNNNGTC	2 cut(s)	61, 4673
EarI	CTCTTC	8 cut(s)	363, 978, 2799, 2836, 3376, 3835, 4303, 4749
Eco130I	CCWWGG	8 cut(s)	229, 257, 2218, 2427, 2473, 3388, 3847, 4315
Eco24I	GRGCYC	1 cut(s)	1231
Eco31I	GGTCTC	1 cut(s)	1817
Eco32I	GATATC	1 cut(s)	558
Eco47I	GGWCC	7 cut(s)	183, 403, 769, 1383, 1721, 2215, 4675
Eco57I	CTGAAG	8 cut(s)	294, 608, 1623, 2022, 2133, 2184, 2274, 4779
Eco81I	CCTNAGG	1 cut(s)	2278
Eco88I	CYCGRG	1 cut(s)	3045
EcoNI	CCTNNNNNAGG	1 cut(s)	2990
EcoO109I	RGGNCCY	2 cut(s)	403, 4675
EcoRI	GAATTC	2 cut(s)	4156, 4624
EcoRII	CCWGG	9 cut(s)	117, 996, 2391, 3316, 3775, 3993, 4243, 4461, 4670
EcoRV	GATATC	1 cut(s)	558
EcoT14I	CCWWGG	8 cut(s)	229, 257, 2218, 2427, 2473, 3388, 3847, 4315
EcoT22I	ATGCAT	1 cut(s)	1140
EcoT38I	GRGCYC	1 cut(s)	1231
ErhI	CCWWGG	8 cut(s)	229, 257, 2218, 2427, 2473, 3388, 3847, 4315
Esp3I	CGTCTC	3 cut(s)	3318, 3534, 3993
FaqI	GGGAC	4 cut(s)	169, 206, 3609, 4661
FauI	CCCGC	2 cut(s)	3574, 4027
FbaI	TGATCA	3 cut(s)	1480, 3601, 4528
FblI	GTMKAC	4 cut(s)	2746, 3436, 3895, 4363
FokI	GGATG	7 cut(s)	240, 396, 887, 1341, 1580, 4424, 4513
FriOI	GRGCYC	1 cut(s)	1231
FspBI	CTAG	4 cut(s)	1688, 1757, 1967, 3188
GlaI	GCGC	4 cut(s)	1393, 4023, 4491, 4808
GsaI	CCCAGC	2 cut(s)	228, 4490
GsuI	CTGGAG	9 cut(s)	1359, 1600, 1791, 2190, 3126, 3477, 3936, 4404, 4617
HaeII	RGCGCY	3 cut(s)	1395, 4493, 4810
HaeIII	GGCC	9 cut(s)	165, 424, 1252, 1931, 3209, 3321, 3740, 4205, 4248
HapII	CCGG	5 cut(s)	1290, 3536, 3560, 4104, 4728
HgaI	GACGC	3 cut(s)	65, 567, 1848
HhaI	GCGC	4 cut(s)	1394, 4024, 4492, 4809
Hin1I	GRCGYC	1 cut(s)	57
Hin6I	GCGC	4 cut(s)	1392, 4022, 4490, 4807
HinP1I	GCGC	4 cut(s)	1392, 4022, 4490, 4807
HincII	GTYRAC	2 cut(s)	2552, 3136
HindII	GTYRAC	2 cut(s)	2552, 3136
HindIII	AAGCTT	1 cut(s)	2526
HpaII	CCGG	5 cut(s)	1290, 3536, 3560, 4104, 4728
HphI	GGTGA	9 cut(s)	2222, 2306, 2394, 3338, 3510, 3797, 3969, 4265, 4706
Hpy99I	CGWCG	2 cut(s)	59, 3988
HpyCH4IV	ACGT	2 cut(s)	150, 672
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1400, 2459, 4489
HpyF3I	CTNAG	9 cut(s)	95, 393, 460, 1269, 1422, 2278, 2328, 2347, 2755
HpySE526I	ACGT	2 cut(s)	150, 672
Hsp92I	GRCGYC	1 cut(s)	57
HspAI	GCGC	4 cut(s)	1392, 4022, 4490, 4807
KflI	GGGWCCC	1 cut(s)	4675
KpnI	GGTACC	5 cut(s)	3465, 3645, 4104, 4392, 4572
Ksp22I	TGATCA	3 cut(s)	1480, 3601, 4528
LguI	GCTCTTC	1 cut(s)	4749
LmnI	GCTCC	3 cut(s)	1810, 3280, 4642
LweI	GCATC	9 cut(s)	454, 643, 769, 1147, 1252, 1663, 2509, 3121, 4763
MaeI	CTAG	4 cut(s)	1688, 1757, 1967, 3188
MaeII	ACGT	2 cut(s)	150, 672
MfeI	CAATTG	3 cut(s)	646, 944, 2888
MflI	RGATCY	6 cut(s)	1866, 2010, 2765, 3055, 4310, 4847
MhlI	GDGCHC	2 cut(s)	1231, 4339
MlsI	TGGCCA	1 cut(s)	3209
MluNI	TGGCCA	1 cut(s)	3209
MlyI	GAGTC	6 cut(s)	734, 1028, 1280, 2195, 2555, 2600
MmeI	TCCRAC	2 cut(s)	548, 2986
Mox20I	TGGCCA	1 cut(s)	3209
Mph1103I	ATGCAT	1 cut(s)	1140
MroXI	GAANNNNTTC	6 cut(s)	489, 908, 1641, 3543, 4002, 4470
MscI	TGGCCA	1 cut(s)	3209
Msp20I	TGGCCA	1 cut(s)	3209
MspA1I	CMGCKG	2 cut(s)	1165, 1319
MspI	CCGG	5 cut(s)	1290, 3536, 3560, 4104, 4728
MunI	CAATTG	3 cut(s)	646, 944, 2888
Mva1269I	GAATGC	2 cut(s)	1643, 2239
MvaI	CCWGG	9 cut(s)	119, 998, 2393, 3318, 3777, 3995, 4245, 4463, 4672
MvnI	CGCG	1 cut(s)	4022
MwoI	GCNNNNNNNGC	3 cut(s)	1400, 2459, 4489
NciI	CCSGG	3 cut(s)	1291, 3536, 3560
NcoI	CCATGG	1 cut(s)	2473
NsiI	ATGCAT	1 cut(s)	1140
NspI	RCATGY	3 cut(s)	358, 1350, 1949
NspV	TTCGAA	1 cut(s)	1033
PaeI	GCATGC	1 cut(s)	1350
PasI	CCCWGGG	1 cut(s)	4671
PciI	ACATGT	1 cut(s)	354
PciSI	GCTCTTC	1 cut(s)	4749
PctI	GAATGC	2 cut(s)	1643, 2239
PdmI	GAANNNNTTC	6 cut(s)	489, 908, 1641, 3543, 4002, 4470
PflMI	CCANNNNNTGG	1 cut(s)	4844
PfoI	TCCNGGA	4 cut(s)	3534, 3775, 3993, 4461
PinAI	ACCGGT	1 cut(s)	4103
PleI	GAGTC	6 cut(s)	733, 1027, 1279, 2194, 2555, 2600
PpsI	GAGTC	6 cut(s)	733, 1027, 1279, 2194, 2555, 2600
Ppu21I	YACGTR	1 cut(s)	673
PpuMI	RGGWCCY	2 cut(s)	403, 4675
PscI	ACATGT	1 cut(s)	354
PshBI	ATTAAT	1 cut(s)	3026
Psp5II	RGGWCCY	2 cut(s)	403, 4675
Psp6I	CCWGG	9 cut(s)	117, 996, 2391, 3316, 3775, 3993, 4243, 4461, 4670
PspFI	CCCAGC	2 cut(s)	224, 4486
PspGI	CCWGG	9 cut(s)	117, 996, 2391, 3316, 3775, 3993, 4243, 4461, 4670
PspPI	GGNCC	7 cut(s)	183, 403, 769, 1383, 1721, 2215, 4675
PspPPI	RGGWCCY	2 cut(s)	403, 4675
PstI	CTGCAG	9 cut(s)	577, 690, 724, 1783, 2362, 3223, 3616, 4075, 4543
PstNI	CAGNNNCTG	3 cut(s)	467, 694, 2419
PsuI	RGATCY	6 cut(s)	1866, 2010, 2765, 3055, 4310, 4847
PvuII	CAGCTG	2 cut(s)	1165, 1319
SapI	GCTCTTC	1 cut(s)	4749
Sau96I	GGNCC	7 cut(s)	183, 403, 769, 1383, 1721, 2215, 4675
SchI	GAGTC	6 cut(s)	734, 1028, 1280, 2195, 2555, 2600
SduI	GDGCHC	2 cut(s)	1231, 4339
SfaNI	GCATC	9 cut(s)	454, 643, 769, 1147, 1252, 1663, 2509, 3121, 4763
SfuI	TTCGAA	1 cut(s)	1033
SinI	GGWCC	7 cut(s)	183, 403, 769, 1383, 1721, 2215, 4675
SmlI	CTYRAG	3 cut(s)	386, 1151, 2861
SmoI	CTYRAG	3 cut(s)	386, 1151, 2861
SphI	GCATGC	1 cut(s)	1350
SsiI	CCGC	5 cut(s)	162, 1553, 3139, 3567, 4020
SspMI	CTAG	4 cut(s)	1688, 1757, 1967, 3188
StyI	CCWWGG	8 cut(s)	229, 257, 2218, 2427, 2473, 3388, 3847, 4315
TaiI	ACGT	2 cut(s)	153, 675
TaqI	TCGA	7 cut(s)	292, 1033, 3329, 3833, 3953, 4256, 4776
TaqII	GACCGA	1 cut(s)	171
TatI	WGTACW	4 cut(s)	502, 701, 1832, 1850
TauI	GCSGC	1 cut(s)	165
TscAI	CASTG	9 cut(s)	131, 695, 1683, 1804, 1815, 1914, 2451, 3255, 3285
TspGWI	ACGGA	7 cut(s)	2083, 3030, 3300, 3622, 4081, 4513, 4549
TspRI	CASTG	9 cut(s)	131, 695, 1683, 1804, 1815, 1914, 2451, 3255, 3285
Van91I	CCANNNNNTGG	1 cut(s)	4844
VpaK11BI	GGWCC	7 cut(s)	183, 403, 769, 1383, 1721, 2215, 4675
VspI	ATTAAT	1 cut(s)	3026
XagI	CCTNNNNNAGG	1 cut(s)	2990
XbaI	TCTAGA	1 cut(s)	1756
XceI	RCATGY	3 cut(s)	358, 1350, 1949
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2573, 3202
XmiI	GTMKAC	4 cut(s)	2746, 3436, 3895, 4363
XmnI	GAANNNNTTC	6 cut(s)	489, 908, 1641, 3543, 4002, 4470
XspI	CTAG	4 cut(s)	1688, 1757, 1967, 3188
Zsp2I	ATGCAT	1 cut(s)	1140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.