Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001065

Physical Location & Seq

Genomic Coordinates Forward (+)

9384132 .. 9385142

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0060000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAAGAAGTGAAGCTACTGGGATTCTGGCCAAGCTCCTTCGTTTACAGAGTGATCTGGGCTCTCAAACTGAAGGGTGTGAAATTCGATTATATAGAAGAAGATCTTTCCAACAAGAGTGAACTGCTACTGCAGTACAACCCAGTCCGCAAGAATGTCCCAGTGCTTGTCCATGGCGGCAAATCAATTGCTGAGTCCCTTGTCATCCTCGAATACATTGAAGAAACTTGGCCACAAAATCCCTTGCTTCCAAAAGATCCTCATGAAAAAGCCTTGGCTCGTTTTTGGATGCAATTTGGAGTAGATAAGATAAGGCCCGCTATCTTTGCATATGTCAGAGCTATCGGAGAAGAAGCCGAAAAGGCAAAAGAGTTCCATGAAGTCCTGAAAATCGTGGAAGAACAAGGCCTTGGAGACCAGAAATTTTTTGGTGGTGACAATACTATAGGTTTGGTGGACATTGCATTTGGAATGCTAGCCTACTGGCTTGAGTGCATTGAAGAAGTCGTAGGAGTGAAGGTTTTAGAGGCCAGCAGTTTGCCTCGCTTGCACGCATGGGCTCAGAATTTCAAGCAAGTGCCTGTGGTGAAAGACAACCTTCCCGATCGTGGAAAACTGCTTGCCCATTACAAACATTCAAGAGAGAAATTGCTATTGGCTGCAAGTTCTAGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006342 GO:0006344 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

Chromo Helicase_C SNF2_N

Protein Analysis

225

Amino Acids

25.66

Weight (kDa)

6.11

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	3 - 75	8e-19	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 80	8.7e-13	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	12 - 76	8.3e-14	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08060 AT1G08060 AT1G08060
fragaria_vesca	FvH4_3g31740 FvH4_3g31740 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540
malus_domestica	MD03G1121600.v1.1 MD11G1139900.v1.1 MD11G1140000.v1.1
prunus_persica	Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104700_v2.0.a1
pyrus_communis	pycom11g11560 pycom11g11580
rosa_chinensis	RchiOBHm_Chr4g0405411 RchiOBHm_Chr5g0058411
rosa_laevigata	RLG00000008844 RLG00000035218
rosa_multiflora	Rmu_sc0000367.1_g000115 Rmu_sc0000575.1_g000013
rosa_roxburghii	Rroxscaffold_1G00022120 Rroxscaffold_1G00022140 Rroxscaffold_5G00349880
rosa_rugosa	Rorug04G0059700 Rorug04G0059800 Rorug04G0059900 Rorug04G0060000 Rorug05G0313800 Rorug05G0313800 Rorug05G0313900 Rorug05G0314000 Rorug05G0314100
rosa_samantha	Rh4AG131700 Rh4BG126600 Rh4CG139100 Rh4DG125700 Rh5AG381300 Rh5BG392800 Rh5CG416900 Rh5DG408000
rosa_wichuraiana	Rw4G010660 Rw5G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	148, 177, 318
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	2 cut(s)	29, 230
AcsI	RAATTY	3 cut(s)	83, 422, 565
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	608
AgsI	TTSAA	4 cut(s)	221, 500, 571, 639
AjuI	GAANNNNNNNTTGG	4 cut(s)	393, 425, 638, 670
AluBI	AGCT	3 cut(s)	16, 36, 341
AluI	AGCT	3 cut(s)	16, 36, 341
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	5 cut(s)	29, 230, 314, 406, 528
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	3 cut(s)	83, 422, 565
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	2 cut(s)	446, 598
AsuNHI	GCTAGC	1 cut(s)	475
BalI	TGGCCA	2 cut(s)	31, 232
BanII	GRGCYC	2 cut(s)	64, 562
BarI	GAAGNNNNNNTAC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	646
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	2 cut(s)	476, 669
BfmI	CTRYAG	2 cut(s)	131, 444
BglI	GCCNNNNNGGC	1 cut(s)	362
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	2 cut(s)	178, 660
BlsI	GCNGC	2 cut(s)	179, 661
BmgT120I	GGNCC	1 cut(s)	315
BmrI	ACTGGG	3 cut(s)	29, 137, 155
BmsI	GCATC	1 cut(s)	279
BmtI	GCTAGC	1 cut(s)	479
BmuI	ACTGGG	3 cut(s)	29, 137, 155
BpuEI	CTTGAG	1 cut(s)	509
BsaI	GGTCTC	1 cut(s)	408
BsaJI	CCNNGG	3 cut(s)	172, 273, 409
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bsc4I	CCNNNNNNNGG	1 cut(s)	608
Bse1I	ACTGG	4 cut(s)	24, 143, 161, 488
Bse3DI	GCAATG	1 cut(s)	459
BseDI	CCNNGG	3 cut(s)	172, 273, 409
BseGI	GGATG	2 cut(s)	204, 294
BseLI	CCNNNNNNNGG	1 cut(s)	608
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	2 cut(s)	183, 575
BseNI	ACTGG	4 cut(s)	24, 143, 161, 488
BseXI	GCAGC	1 cut(s)	646
Bsh1285I	CGRYCG	1 cut(s)	607
BshFI	GGCC	5 cut(s)	31, 232, 316, 408, 530
BsiEI	CGRYCG	1 cut(s)	607
BslFI	GGGAC	2 cut(s)	143, 181
BslI	CCNNNNNNNGG	1 cut(s)	608
BsmAI	GTCTC	1 cut(s)	408
BsmFI	GGGAC	2 cut(s)	143, 181
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	5 cut(s)	31, 232, 316, 408, 530
Bso31I	GGTCTC	1 cut(s)	408
Bsp1286I	GDGCHC	2 cut(s)	64, 562
Bsp143I	GATC	4 cut(s)	54, 103, 256, 604
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	3 cut(s)	148, 177, 318
BspANI	GGCC	5 cut(s)	31, 232, 316, 408, 530
BspCNI	CTCAG	2 cut(s)	184, 574
BspHI	TCATGA	1 cut(s)	262
BspMAI	CTGCAG	1 cut(s)	135
BspOI	GCTAGC	1 cut(s)	479
BspPI	GGATC	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	408
BsrDI	GCAATG	1 cut(s)	459
BsrI	ACTGG	4 cut(s)	24, 143, 161, 488
BssECI	CCNNGG	3 cut(s)	172, 273, 409
BssMI	GATC	4 cut(s)	54, 103, 256, 604
BssT1I	CCWWGG	3 cut(s)	172, 273, 409
BstC8I	GCNNGC	6 cut(s)	318, 477, 532, 548, 552, 621
BstDEI	CTNAG	2 cut(s)	192, 561
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	204, 294
BstKTI	GATC	4 cut(s)	57, 106, 259, 607
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	4 cut(s)	54, 103, 256, 604
BstMCI	CGRYCG	1 cut(s)	607
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 362, 547
BstSFI	CTRYAG	2 cut(s)	131, 444
BstV1I	GCAGC	1 cut(s)	646
BstX2I	RGATCY	2 cut(s)	103, 256
BstYI	RGATCY	2 cut(s)	103, 256
BsuRI	GGCC	5 cut(s)	31, 232, 316, 408, 530
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	204, 294
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	6 cut(s)	318, 477, 532, 548, 552, 621
CciI	TCATGA	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	315
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	4 cut(s)	173, 263, 377, 555
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	192, 561
DpnI	GATC	4 cut(s)	56, 105, 258, 606
DpnII	GATC	4 cut(s)	54, 103, 256, 604
EaeI	YGGCCR	2 cut(s)	29, 230
Eco130I	CCWWGG	3 cut(s)	172, 273, 409
Eco147I	AGGCCT	1 cut(s)	408
Eco24I	GRGCYC	2 cut(s)	64, 562
Eco31I	GGTCTC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	92
EcoT14I	CCWWGG	3 cut(s)	172, 273, 409
EcoT38I	GRGCYC	2 cut(s)	64, 562
ErhI	CCWWGG	3 cut(s)	172, 273, 409
FaeI	CATG	4 cut(s)	176, 266, 380, 558
FaiI	YATR	9 cut(s)	93, 95, 174, 264, 331, 333, 378, 446, 556
FalI	AAGNNNNNCTT	4 cut(s)	90, 122, 582, 614
FaqI	GGGAC	2 cut(s)	143, 181
FatI	CATG	4 cut(s)	172, 262, 376, 554
FauI	CCCGC	1 cut(s)	325
FauNDI	CATATG	1 cut(s)	331
Fnu4HI	GCNGC	2 cut(s)	178, 660
FokI	GGATG	2 cut(s)	191, 301
FriOI	GRGCYC	2 cut(s)	64, 562
Fsp4HI	GCNGC	2 cut(s)	178, 660
FspBI	CTAG	2 cut(s)	476, 669
GluI	GCNGC	2 cut(s)	178, 660
HaeIII	GGCC	5 cut(s)	31, 232, 316, 408, 530
Hin1II	CATG	4 cut(s)	176, 266, 380, 558
HinfI	GANTC	2 cut(s)	24, 194
HphI	GGTGA	2 cut(s)	446, 598
Hpy166II	GTNNAC	3 cut(s)	46, 122, 457
Hpy188I	TCNGA	3 cut(s)	338, 347, 564
Hpy188III	TCNNGA	4 cut(s)	263, 385, 602, 639
Hpy8I	GTNNAC	3 cut(s)	46, 122, 457
HpyAV	CCTTC	4 cut(s)	49, 67, 511, 608
HpyCH4V	TGCA	7 cut(s)	133, 292, 329, 464, 495, 550, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 362, 547
HpyF3I	CTNAG	2 cut(s)	192, 561
Hsp92II	CATG	4 cut(s)	176, 266, 380, 558
Kzo9I	GATC	4 cut(s)	54, 103, 256, 604
LmnI	GCTCC	1 cut(s)	41
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	2 cut(s)	476, 669
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	4 cut(s)	56, 105, 258, 606
MboI	GATC	4 cut(s)	54, 103, 256, 604
MboII	GAAGA	7 cut(s)	17, 110, 113, 233, 362, 410, 512
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	2 cut(s)	103, 256
MhlI	GDGCHC	2 cut(s)	64, 562
MlsI	TGGCCA	2 cut(s)	31, 232
MluCI	AATT	6 cut(s)	83, 186, 293, 422, 565, 647
MluNI	TGGCCA	2 cut(s)	31, 232
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	4 cut(s)	218, 270, 520, 552
Mox20I	TGGCCA	2 cut(s)	31, 232
MscI	TGGCCA	2 cut(s)	31, 232
Msp20I	TGGCCA	2 cut(s)	31, 232
MunI	CAATTG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	477
MwoI	GCNNNNNNNGC	3 cut(s)	326, 362, 547
NcoI	CCATGG	1 cut(s)	172
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	4 cut(s)	54, 103, 256, 604
NheI	GCTAGC	1 cut(s)	475
NlaIII	CATG	4 cut(s)	176, 266, 380, 558
NmuCI	GTSAC	1 cut(s)	434
PagI	TCATGA	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	408
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	24
PkrI	GCNGC	2 cut(s)	179, 661
Ple19I	CGATCG	1 cut(s)	607
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	315
PstI	CTGCAG	1 cut(s)	135
PsuI	RGATCY	2 cut(s)	103, 256
PvuI	CGATCG	1 cut(s)	607
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SatI	GCNGC	2 cut(s)	178, 660
Sau3AI	GATC	4 cut(s)	54, 103, 256, 604
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	1 cut(s)	203
SduI	GDGCHC	2 cut(s)	64, 562
SetI	ASST	6 cut(s)	18, 38, 343, 451, 522, 600
SfaNI	GCATC	1 cut(s)	279
SfcI	CTRYAG	2 cut(s)	131, 444
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	6 cut(s)	83, 186, 293, 422, 565, 647
SseBI	AGGCCT	1 cut(s)	408
SsiI	CCGC	3 cut(s)	148, 177, 318
SspMI	CTAG	2 cut(s)	476, 669
StuI	AGGCCT	1 cut(s)	408
StyI	CCWWGG	3 cut(s)	172, 273, 409
TaqI	TCGA	2 cut(s)	87, 210
TasI	AATT	6 cut(s)	83, 186, 293, 422, 565, 647
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	24
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	1 cut(s)	659
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	2 cut(s)	279, 393
TspRI	CASTG	1 cut(s)	168
XapI	RAATTY	3 cut(s)	83, 422, 565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XspI	CTAG	2 cut(s)	476, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.