Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001065

Physical Location & Seq

Genomic Coordinates Reverse (-)

27217625 .. 27218911

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00022120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAATGCTGCTCCTATTGGAGTTTGGCACTGTTCTGACTGTGTTAAGAAAAAGACAGAATCTGGTATTCATTCCATGTCAGATGGACAGGAGTCACTCGGGAATGCTAGACAAGTGGAGGTATCAGATGCTGATGATTCTTCCAGGTTTATAGAGTACTGGGTTCCTGTAGAGATATCGAATGTTCAGCGAGAGCTATACTGTGAAAAGCTACTGTTAAACCCCTCATTACTTCAGTCATCTTCAACAAAAGATCTCGTTGGAGCACTCCACGATCTACTTAGATCTACCCGAAAGGTTGGTTGCTTTTGCTTTAATTTGGTTATGGTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006342 GO:0006344 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

Chromo Helicase_C SNF2_N

Protein Analysis

111

Amino Acids

12.3

Weight (kDa)

5.51

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08060 AT1G08060 AT1G08060
fragaria_vesca	FvH4_3g31740 FvH4_3g31740 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540
malus_domestica	MD03G1121600.v1.1 MD11G1139900.v1.1 MD11G1140000.v1.1
prunus_persica	Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104700_v2.0.a1
pyrus_communis	pycom11g11560 pycom11g11580
rosa_chinensis	RchiOBHm_Chr4g0405411 RchiOBHm_Chr5g0058411
rosa_laevigata	RLG00000008844 RLG00000035218
rosa_multiflora	Rmu_sc0000367.1_g000115 Rmu_sc0000575.1_g000013
rosa_roxburghii	Rroxscaffold_1G00022120 Rroxscaffold_1G00022140 Rroxscaffold_5G00349880
rosa_rugosa	Rorug04G0059700 Rorug04G0059800 Rorug04G0059900 Rorug04G0060000 Rorug05G0313800 Rorug05G0313800 Rorug05G0313900 Rorug05G0314000 Rorug05G0314100
rosa_samantha	Rh4AG131700 Rh4BG126600 Rh4CG139100 Rh4DG125700 Rh5AG381300 Rh5BG392800 Rh5CG416900 Rh5DG408000
rosa_wichuraiana	Rw4G010660 Rw5G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	158
AgsI	TTSAA	1 cut(s)	246
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	2 cut(s)	196, 211
AluI	AGCT	2 cut(s)	196, 211
Alw21I	GWGCWC	1 cut(s)	268
AlwNI	CAGNNNCTG	2 cut(s)	62, 131
Ama87I	CYCGRG	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	268
BccI	CCATC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	145
BfaI	CTAG	1 cut(s)	108
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	2 cut(s)	253, 284
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
BmcAI	AGTACT	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	145
BmrI	ACTGGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	118
BmuI	ACTGGG	1 cut(s)	169
BoxI	GACNNNNGTC	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	98
BsmI	GAATGC	2 cut(s)	10, 109
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	3 cut(s)	253, 274, 284
BspLI	GGNNCC	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	164
BssMI	GATC	3 cut(s)	253, 274, 284
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	4 cut(s)	32, 41, 203, 216
BstDEI	CTNAG	1 cut(s)	281
BstKTI	GATC	3 cut(s)	256, 277, 287
BstMBI	GATC	3 cut(s)	253, 274, 284
BstNI	CCWGG	1 cut(s)	145
BstPAI	GACNNNNGTC	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	143
BstSFI	CTRYAG	1 cut(s)	168
BstX2I	RGATCY	2 cut(s)	253, 284
BstYI	RGATCY	2 cut(s)	253, 284
BtsIMutI	CAGTG	1 cut(s)	28
CaiI	CAGNNNCTG	2 cut(s)	62, 131
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	2 cut(s)	76, 333
CviJI	RGCY	2 cut(s)	196, 211
CviKI_1	RGCY	2 cut(s)	196, 211
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	3 cut(s)	255, 276, 286
DpnII	GATC	3 cut(s)	253, 274, 284
Eco32I	GATATC	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	143
EcoRV	GATATC	1 cut(s)	177
FaeI	CATG	2 cut(s)	79, 336
FaiI	YATR	5 cut(s)	77, 152, 199, 326, 334
FatI	CATG	2 cut(s)	75, 332
Fnu4HI	GCNGC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	108
GluI	GCNGC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	79, 336
HinfI	GANTC	3 cut(s)	59, 92, 137
Hpy188I	TCNGA	3 cut(s)	37, 82, 127
Hpy188III	TCNNGA	1 cut(s)	100
HpyCH4III	ACNGT	4 cut(s)	32, 41, 203, 216
HpyCH4V	TGCA	1 cut(s)	332
HpyF3I	CTNAG	1 cut(s)	281
Hsp92II	CATG	2 cut(s)	79, 336
Kzo9I	GATC	3 cut(s)	253, 274, 284
LmnI	GCTCC	2 cut(s)	16, 263
LpnPI	CCDG	6 cut(s)	48, 74, 130, 145, 157, 180
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	3 cut(s)	255, 276, 286
MboI	GATC	3 cut(s)	253, 274, 284
MboII	GAAGA	2 cut(s)	132, 234
MflI	RGATCY	2 cut(s)	253, 284
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	1 cut(s)	316
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	2 cut(s)	112, 235
MseI	TTAA	3 cut(s)	45, 218, 315
MspR9I	CCNGG	1 cut(s)	145
Mva1269I	GAATGC	2 cut(s)	10, 109
MvaI	CCWGG	1 cut(s)	145
NdeII	GATC	3 cut(s)	253, 274, 284
NlaIII	CATG	2 cut(s)	79, 336
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	93
PctI	GAATGC	2 cut(s)	10, 109
PfeI	GAWTC	2 cut(s)	59, 137
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PshAI	GACNNNNGTC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	165
PstNI	CAGNNNCTG	2 cut(s)	62, 131
PsuI	RGATCY	2 cut(s)	253, 284
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	3 cut(s)	45, 218, 315
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	3 cut(s)	253, 274, 284
ScaI	AGTACT	1 cut(s)	158
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	5 cut(s)	123, 149, 198, 213, 300
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	168
Sse9I	AATT	1 cut(s)	316
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	4 cut(s)	32, 41, 203, 216
TaqI	TCGA	1 cut(s)	179
TasI	AATT	1 cut(s)	316
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	2 cut(s)	59, 137
Tru1I	TTAA	3 cut(s)	45, 218, 315
Tru9I	TTAA	3 cut(s)	45, 218, 315
TscAI	CASTG	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	93
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	2 cut(s)	17, 59
TspRI	CASTG	1 cut(s)	35
XspI	CTAG	1 cut(s)	108
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.