helicase protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MOM1 | PF25029 | 13 - 129 | 2.7e-42 | MOM1-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 223, 3786 |
| Acc65I | GGTACC | 3 cut(s) | 3203, 3482, 3953 |
| AccB1I | GGYRCC | 7 cut(s) | 1154, 1418, 3124, 3203, 3482, 3583, 3953 |
| AccI | GTMKAC | 4 cut(s) | 2374, 2998, 3457, 3928 |
| AciI | CCGC | 5 cut(s) | 1196, 1376, 1422, 2767, 2790 |
| AclWI | GGATC | 5 cut(s) | 1504, 1720, 2691, 4407, 4420 |
| AcuI | CTGAAG | 8 cut(s) | 254, 362, 1266, 1665, 1761, 1812, 1902, 4344 |
| AcyI | GRCGYC | 1 cut(s) | 3584 |
| AdeI | CACNNNGTG | 2 cut(s) | 3227, 3686 |
| AflIII | ACRYGT | 1 cut(s) | 318 |
| AgeI | ACCGGT | 1 cut(s) | 2819 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4238 |
| AhlI | ACTAGT | 1 cut(s) | 3026 |
| AjnI | CCWGG | 7 cut(s) | 2019, 2878, 3096, 3337, 3555, 3808, 4026 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 626, 658 |
| Alw26I | GTCTC | 9 cut(s) | 378, 477, 529, 1460, 1691, 2499, 2573, 3096, 3555 |
| AlwI | GGATC | 5 cut(s) | 1504, 1720, 2691, 4407, 4420 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 113, 340, 2047 |
| Ama87I | CYCGRG | 1 cut(s) | 2673 |
| AoxI | GGCC | 7 cut(s) | 68, 1572, 2881, 3300, 3340, 3768, 3811 |
| ArsI | GACNNNNNNTTYG | 8 cut(s) | 3050, 3082, 3509, 3541, 3980, 4012, 4163, 4195 |
| AseI | ATTAAT | 1 cut(s) | 2654 |
| AsiGI | ACCGGT | 1 cut(s) | 2819 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 135, 554, 1284, 3105, 3564, 4035 |
| Asp718I | GGTACC | 3 cut(s) | 3203, 3482, 3953 |
| AspLEI | GCGC | 4 cut(s) | 1037, 3586, 4057, 4374 |
| AspS9I | GGNCC | 7 cut(s) | 49, 415, 1026, 1364, 1843, 2822, 4240 |
| AsuC2I | CCSGG | 3 cut(s) | 934, 3122, 3581 |
| AsuII | TTCGAA | 1 cut(s) | 679 |
| AvaI | CYCGRG | 1 cut(s) | 2673 |
| AvaII | GGWCC | 7 cut(s) | 49, 415, 1026, 1364, 1843, 2822, 4240 |
| AxyI | CCTNAGG | 1 cut(s) | 1906 |
| BaeGI | GKGCMC | 1 cut(s) | 3904 |
| BamHI | GGATCC | 1 cut(s) | 4412 |
| BanI | GGYRCC | 7 cut(s) | 1154, 1418, 3124, 3203, 3482, 3583, 3953 |
| BanII | GRGCYC | 1 cut(s) | 874 |
| BauI | CACGAG | 1 cut(s) | 1536 |
| BbsI | GAAGAC | 6 cut(s) | 350, 765, 1256, 2238, 3409, 3880 |
| BciT130I | CCWGG | 7 cut(s) | 2021, 2880, 3098, 3339, 3557, 3810, 4028 |
| BciVI | GTATCC | 1 cut(s) | 1729 |
| BclI | TGATCA | 4 cut(s) | 1123, 3163, 3622, 4093 |
| BcnI | CCSGG | 3 cut(s) | 934, 3122, 3581 |
| BcoDI | GTCTC | 9 cut(s) | 378, 477, 529, 1460, 1691, 2499, 2573, 3096, 3555 |
| BcuI | ACTAGT | 1 cut(s) | 3026 |
| BfaI | CTAG | 4 cut(s) | 1331, 1400, 1610, 3027 |
| BfmI | CTRYAG | 9 cut(s) | 219, 332, 348, 366, 984, 1986, 3174, 3633, 4104 |
| BfoI | RGCGCY | 4 cut(s) | 1038, 3587, 4058, 4375 |
| BfuI | GTATCC | 1 cut(s) | 1729 |
| BglII | AGATCT | 2 cut(s) | 1653, 2393 |
| Bme18I | GGWCC | 7 cut(s) | 49, 415, 1026, 1364, 1843, 2822, 4240 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4238 |
| BmeT110I | CYCGRG | 1 cut(s) | 2673 |
| BmgT120I | GGNCC | 7 cut(s) | 49, 415, 1026, 1364, 1843, 2822, 4240 |
| BmsI | GCATC | 8 cut(s) | 100, 289, 415, 895, 1306, 2137, 2749, 4328 |
| BpiI | GAAGAC | 6 cut(s) | 350, 765, 1256, 2238, 3409, 3880 |
| BpmI | CTGGAG | 9 cut(s) | 1002, 1243, 1434, 1818, 2754, 3039, 3498, 3969, 4182 |
| Bpu14I | TTCGAA | 1 cut(s) | 679 |
| BpuEI | CTTGAG | 3 cut(s) | 53, 782, 2474 |
| BpuMI | CCSGG | 3 cut(s) | 934, 3122, 3581 |
| BsaAI | YACGTR | 2 cut(s) | 319, 923 |
| BsaHI | GRCGYC | 1 cut(s) | 3584 |
| BsaI | GGTCTC | 1 cut(s) | 1460 |
| BsaWI | WCCGGW | 1 cut(s) | 2819 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1575, 1605, 2860, 2890 |
| Bse118I | RCCGGY | 1 cut(s) | 2819 |
| Bse21I | CCTNAGG | 1 cut(s) | 1906 |
| Bse3DI | GCAATG | 4 cut(s) | 227, 333, 1632, 2271 |
| BseBI | CCWGG | 7 cut(s) | 2021, 2880, 3098, 3339, 3557, 3810, 4028 |
| BseGI | GGATG | 4 cut(s) | 55, 526, 1216, 4071 |
| BseMI | GCAATG | 4 cut(s) | 227, 333, 1632, 2271 |
| BseMII | CTCAG | 7 cut(s) | 53, 120, 903, 1056, 1920, 1970, 2397 |
| BseRI | GAGGAG | 6 cut(s) | 2920, 3324, 3379, 3850, 4194, 4209 |
| BseSI | GKGCMC | 1 cut(s) | 3904 |
| BseYI | CCCAGC | 1 cut(s) | 4051 |
| BsgI | GTGCAG | 2 cut(s) | 903, 2151 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1376 |
| BshFI | GGCC | 7 cut(s) | 70, 1574, 2883, 3302, 3342, 3770, 3813 |
| BshNI | GGYRCC | 7 cut(s) | 1154, 1418, 3124, 3203, 3482, 3583, 3953 |
| BshTI | ACCGGT | 1 cut(s) | 2819 |
| BsiEI | CGRYCG | 1 cut(s) | 1376 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2673 |
| BsiSI | CCGG | 5 cut(s) | 933, 2820, 3122, 3581, 4293 |
| BslFI | GGGAC | 4 cut(s) | 984, 3171, 3720, 4226 |
| BsmAI | GTCTC | 9 cut(s) | 378, 477, 529, 1460, 1691, 2499, 2573, 3096, 3555 |
| BsmBI | CGTCTC | 2 cut(s) | 3096, 3555 |
| BsmFI | GGGAC | 4 cut(s) | 984, 3171, 3720, 4226 |
| BsmI | GAATGC | 2 cut(s) | 1286, 1867 |
| BsnI | GGCC | 7 cut(s) | 70, 1574, 2883, 3302, 3342, 3770, 3813 |
| Bso31I | GGTCTC | 1 cut(s) | 1460 |
| BsoBI | CYCGRG | 1 cut(s) | 2673 |
| Bsp119I | TTCGAA | 1 cut(s) | 679 |
| Bsp1286I | GDGCHC | 2 cut(s) | 874, 3904 |
| Bsp19I | CCATGG | 1 cut(s) | 2101 |
| BspACI | CCGC | 5 cut(s) | 1196, 1376, 1422, 2767, 2790 |
| BspANI | GGCC | 7 cut(s) | 70, 1574, 2883, 3302, 3342, 3770, 3813 |
| BspCNI | CTCAG | 7 cut(s) | 52, 119, 904, 1057, 1919, 1969, 2396 |
| BspHI | TCATGA | 9 cut(s) | 1120, 1483, 2497, 2743, 3040, 3166, 3625, 3970, 4096 |
| BspMAI | CTGCAG | 7 cut(s) | 223, 336, 370, 1990, 3178, 3637, 4108 |
| BspPI | GGATC | 5 cut(s) | 1504, 1720, 2691, 4407, 4420 |
| BspQI | GCTCTTC | 2 cut(s) | 2427, 4314 |
| BspT104I | TTCGAA | 1 cut(s) | 679 |
| BspT107I | GGYRCC | 7 cut(s) | 1154, 1418, 3124, 3203, 3482, 3583, 3953 |
| BspTNI | GGTCTC | 1 cut(s) | 1460 |
| BsrDI | GCAATG | 4 cut(s) | 227, 333, 1632, 2271 |
| BsrFI | RCCGGY | 1 cut(s) | 2819 |
| BssAI | RCCGGY | 1 cut(s) | 2819 |
| BssNI | GRCGYC | 1 cut(s) | 3584 |
| BssSI | CACGAG | 1 cut(s) | 1536 |
| BssT1I | CCWWGG | 7 cut(s) | 1846, 2055, 2101, 2950, 3409, 3880, 4236 |
| Bst2BI | CACGAG | 1 cut(s) | 1536 |
| Bst2UI | CCWGG | 7 cut(s) | 2021, 2880, 3098, 3339, 3557, 3810, 4028 |
| Bst4CI | ACNGT | 8 cut(s) | 1348, 1442, 1685, 1774, 2027, 2435, 4283, 4404 |
| Bst6I | CTCTTC | 8 cut(s) | 9, 624, 2427, 2464, 2938, 3397, 3868, 4314 |
| BstACI | GRCGYC | 1 cut(s) | 3584 |
| BstBAI | YACGTR | 2 cut(s) | 319, 923 |
| BstBI | TTCGAA | 1 cut(s) | 679 |
| BstC8I | GCNNGC | 6 cut(s) | 192, 823, 991, 2158, 2634, 4305 |
| BstDEI | CTNAG | 8 cut(s) | 39, 106, 912, 1065, 1906, 1956, 1975, 2383 |
| BstDSI | CCRYGG | 1 cut(s) | 2101 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2618 |
| BstF5I | GGATG | 4 cut(s) | 55, 526, 1216, 4071 |
| BstH2I | RGCGCY | 4 cut(s) | 1038, 3587, 4058, 4375 |
| BstHHI | GCGC | 4 cut(s) | 1037, 3586, 4057, 4374 |
| BstMAI | GTCTC | 9 cut(s) | 378, 477, 529, 1460, 1691, 2499, 2573, 3096, 3555 |
| BstMCI | CGRYCG | 1 cut(s) | 1376 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1043, 2087, 4054 |
| BstNI | CCWGG | 7 cut(s) | 2021, 2880, 3098, 3339, 3557, 3810, 4028 |
| BstNSI | RCATGY | 3 cut(s) | 198, 993, 1592 |
| BstSFI | CTRYAG | 9 cut(s) | 219, 332, 348, 366, 984, 1986, 3174, 3633, 4104 |
| BstSLI | GKGCMC | 1 cut(s) | 3904 |
| BstV2I | GAAGAC | 6 cut(s) | 350, 765, 1256, 2238, 3409, 3880 |
| BstX2I | RGATCY | 5 cut(s) | 1509, 1653, 2393, 2683, 4412 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2102 |
| BstYI | RGATCY | 5 cut(s) | 1509, 1653, 2393, 2683, 4412 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1906 |
| BsuI | GTATCC | 1 cut(s) | 1729 |
| BsuRI | GGCC | 7 cut(s) | 70, 1574, 2883, 3302, 3342, 3770, 3813 |
| BtgI | CCRYGG | 1 cut(s) | 2101 |
| BtsCI | GGATG | 4 cut(s) | 55, 526, 1216, 4071 |
| BtsI | GCAGTG | 2 cut(s) | 341, 1326 |
| BtsIMutI | CAGTG | 9 cut(s) | 341, 1326, 1447, 1458, 1557, 1893, 2072, 2810, 2840 |
| Cac8I | GCNNGC | 6 cut(s) | 192, 823, 991, 2158, 2634, 4305 |
| CaiI | CAGNNNCTG | 3 cut(s) | 113, 340, 2047 |
| CciI | TCATGA | 9 cut(s) | 1120, 1483, 2497, 2743, 3040, 3166, 3625, 3970, 4096 |
| CfoI | GCGC | 4 cut(s) | 1037, 3586, 4057, 4374 |
| Cfr10I | RCCGGY | 1 cut(s) | 2819 |
| Cfr13I | GGNCC | 7 cut(s) | 49, 415, 1026, 1364, 1843, 2822, 4240 |
| CseI | GACGC | 3 cut(s) | 213, 773, 1491 |
| CspAI | ACCGGT | 1 cut(s) | 2819 |
| DdeI | CTNAG | 8 cut(s) | 39, 106, 912, 1065, 1906, 1956, 1975, 2383 |
| DinI | GGCGCC | 1 cut(s) | 3585 |
| DraIII | CACNNNGTG | 2 cut(s) | 3227, 3686 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 223, 3786 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4238 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 223, 3786 |
| Eam1104I | CTCTTC | 8 cut(s) | 9, 624, 2427, 2464, 2938, 3397, 3868, 4314 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4238 |
| EarI | CTCTTC | 8 cut(s) | 9, 624, 2427, 2464, 2938, 3397, 3868, 4314 |
| Eco130I | CCWWGG | 7 cut(s) | 1846, 2055, 2101, 2950, 3409, 3880, 4236 |
| Eco24I | GRGCYC | 1 cut(s) | 874 |
| Eco31I | GGTCTC | 1 cut(s) | 1460 |
| Eco32I | GATATC | 1 cut(s) | 204 |
| Eco47I | GGWCC | 7 cut(s) | 49, 415, 1026, 1364, 1843, 2822, 4240 |
| Eco57I | CTGAAG | 8 cut(s) | 254, 362, 1266, 1665, 1761, 1812, 1902, 4344 |
| Eco81I | CCTNAGG | 1 cut(s) | 1906 |
| Eco88I | CYCGRG | 1 cut(s) | 2673 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2618 |
| EcoO109I | RGGNCCY | 1 cut(s) | 49 |
| EcoRI | GAATTC | 2 cut(s) | 3718, 4189 |
| EcoRII | CCWGG | 7 cut(s) | 2019, 2878, 3096, 3337, 3555, 3808, 4026 |
| EcoRV | GATATC | 1 cut(s) | 204 |
| EcoT14I | CCWWGG | 7 cut(s) | 1846, 2055, 2101, 2950, 3409, 3880, 4236 |
| EcoT38I | GRGCYC | 1 cut(s) | 874 |
| EgeI | GGCGCC | 1 cut(s) | 3585 |
| EheI | GGCGCC | 1 cut(s) | 3585 |
| ErhI | CCWWGG | 7 cut(s) | 1846, 2055, 2101, 2950, 3409, 3880, 4236 |
| Esp3I | CGTCTC | 2 cut(s) | 3096, 3555 |
| FaqI | GGGAC | 4 cut(s) | 984, 3171, 3720, 4226 |
| FauNDI | CATATG | 1 cut(s) | 2661 |
| FbaI | TGATCA | 4 cut(s) | 1123, 3163, 3622, 4093 |
| FblI | GTMKAC | 4 cut(s) | 2374, 2998, 3457, 3928 |
| FokI | GGATG | 4 cut(s) | 42, 533, 1223, 4078 |
| FriOI | GRGCYC | 1 cut(s) | 874 |
| FspBI | CTAG | 4 cut(s) | 1331, 1400, 1610, 3027 |
| GlaI | GCGC | 4 cut(s) | 1036, 3585, 4056, 4373 |
| GsaI | CCCAGC | 1 cut(s) | 4055 |
| GsuI | CTGGAG | 9 cut(s) | 1002, 1243, 1434, 1818, 2754, 3039, 3498, 3969, 4182 |
| HaeII | RGCGCY | 4 cut(s) | 1038, 3587, 4058, 4375 |
| HaeIII | GGCC | 7 cut(s) | 70, 1574, 2883, 3302, 3342, 3770, 3813 |
| HapII | CCGG | 5 cut(s) | 933, 2820, 3122, 3581, 4293 |
| HgaI | GACGC | 3 cut(s) | 213, 773, 1491 |
| HhaI | GCGC | 4 cut(s) | 1037, 3586, 4057, 4374 |
| Hin1I | GRCGYC | 1 cut(s) | 3584 |
| Hin6I | GCGC | 4 cut(s) | 1035, 3584, 4055, 4372 |
| HinP1I | GCGC | 4 cut(s) | 1035, 3584, 4055, 4372 |
| HincII | GTYRAC | 2 cut(s) | 2180, 2764 |
| HindII | GTYRAC | 2 cut(s) | 2180, 2764 |
| HindIII | AAGCTT | 1 cut(s) | 2154 |
| HpaII | CCGG | 5 cut(s) | 933, 2820, 3122, 3581, 4293 |
| Hpy99I | CGWCG | 1 cut(s) | 3550 |
| HpyCH4III | ACNGT | 8 cut(s) | 1348, 1442, 1685, 1774, 2027, 2435, 4283, 4404 |
| HpyCH4IV | ACGT | 2 cut(s) | 318, 922 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1043, 2087, 4054 |
| HpyF3I | CTNAG | 8 cut(s) | 39, 106, 912, 1065, 1906, 1956, 1975, 2383 |
| HpySE526I | ACGT | 2 cut(s) | 318, 922 |
| Hsp92I | GRCGYC | 1 cut(s) | 3584 |
| HspAI | GCGC | 4 cut(s) | 1035, 3584, 4055, 4372 |
| KasI | GGCGCC | 1 cut(s) | 3583 |
| KpnI | GGTACC | 3 cut(s) | 3207, 3486, 3957 |
| Ksp22I | TGATCA | 4 cut(s) | 1123, 3163, 3622, 4093 |
| LguI | GCTCTTC | 2 cut(s) | 2427, 4314 |
| LmnI | GCTCC | 5 cut(s) | 1453, 2842, 3181, 4207, 4264 |
| LweI | GCATC | 8 cut(s) | 100, 289, 415, 895, 1306, 2137, 2749, 4328 |
| MaeI | CTAG | 4 cut(s) | 1331, 1400, 1610, 3027 |
| MaeII | ACGT | 2 cut(s) | 318, 922 |
| MfeI | CAATTG | 3 cut(s) | 292, 590, 2516 |
| MflI | RGATCY | 5 cut(s) | 1509, 1653, 2393, 2683, 4412 |
| MhlI | GDGCHC | 2 cut(s) | 874, 3904 |
| Mly113I | GGCGCC | 1 cut(s) | 3584 |
| MlyI | GAGTC | 7 cut(s) | 380, 674, 923, 1823, 2183, 2228, 4147 |
| MmeI | TCCRAC | 2 cut(s) | 194, 2614 |
| MroXI | GAANNNNTTC | 6 cut(s) | 135, 554, 1284, 3105, 3564, 4035 |
| MspA1I | CMGCKG | 2 cut(s) | 811, 962 |
| MspI | CCGG | 5 cut(s) | 933, 2820, 3122, 3581, 4293 |
| MunI | CAATTG | 3 cut(s) | 292, 590, 2516 |
| Mva1269I | GAATGC | 2 cut(s) | 1286, 1867 |
| MvaI | CCWGG | 7 cut(s) | 2021, 2880, 3098, 3339, 3557, 3810, 4028 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1043, 2087, 4054 |
| NarI | GGCGCC | 1 cut(s) | 3584 |
| NciI | CCSGG | 3 cut(s) | 934, 3122, 3581 |
| NcoI | CCATGG | 1 cut(s) | 2101 |
| NdeI | CATATG | 1 cut(s) | 2661 |
| NspI | RCATGY | 3 cut(s) | 198, 993, 1592 |
| NspV | TTCGAA | 1 cut(s) | 679 |
| PaeI | GCATGC | 1 cut(s) | 993 |
| PagI | TCATGA | 9 cut(s) | 1120, 1483, 2497, 2743, 3040, 3166, 3625, 3970, 4096 |
| PciSI | GCTCTTC | 2 cut(s) | 2427, 4314 |
| PctI | GAATGC | 2 cut(s) | 1286, 1867 |
| PdmI | GAANNNNTTC | 6 cut(s) | 135, 554, 1284, 3105, 3564, 4035 |
| PfoI | TCCNGGA | 3 cut(s) | 3096, 3555, 4026 |
| PinAI | ACCGGT | 1 cut(s) | 2819 |
| PleI | GAGTC | 7 cut(s) | 379, 673, 922, 1822, 2183, 2228, 4146 |
| PluTI | GGCGCC | 1 cut(s) | 3587 |
| PpsI | GAGTC | 7 cut(s) | 379, 673, 922, 1822, 2183, 2228, 4146 |
| Ppu21I | YACGTR | 2 cut(s) | 319, 923 |
| PpuMI | RGGWCCY | 1 cut(s) | 49 |
| PshBI | ATTAAT | 1 cut(s) | 2654 |
| Psp5II | RGGWCCY | 1 cut(s) | 49 |
| Psp6I | CCWGG | 7 cut(s) | 2019, 2878, 3096, 3337, 3555, 3808, 4026 |
| PspFI | CCCAGC | 1 cut(s) | 4051 |
| PspGI | CCWGG | 7 cut(s) | 2019, 2878, 3096, 3337, 3555, 3808, 4026 |
| PspPI | GGNCC | 7 cut(s) | 49, 415, 1026, 1364, 1843, 2822, 4240 |
| PspPPI | RGGWCCY | 1 cut(s) | 49 |
| PstI | CTGCAG | 7 cut(s) | 223, 336, 370, 1990, 3178, 3637, 4108 |
| PstNI | CAGNNNCTG | 3 cut(s) | 113, 340, 2047 |
| PsuI | RGATCY | 5 cut(s) | 1509, 1653, 2393, 2683, 4412 |
| PvuII | CAGCTG | 2 cut(s) | 811, 962 |
| SapI | GCTCTTC | 2 cut(s) | 2427, 4314 |
| Sau96I | GGNCC | 7 cut(s) | 49, 415, 1026, 1364, 1843, 2822, 4240 |
| SchI | GAGTC | 7 cut(s) | 380, 674, 923, 1823, 2183, 2228, 4147 |
| SduI | GDGCHC | 2 cut(s) | 874, 3904 |
| SfaNI | GCATC | 8 cut(s) | 100, 289, 415, 895, 1306, 2137, 2749, 4328 |
| SfcI | CTRYAG | 9 cut(s) | 219, 332, 348, 366, 984, 1986, 3174, 3633, 4104 |
| SfoI | GGCGCC | 1 cut(s) | 3585 |
| SfuI | TTCGAA | 1 cut(s) | 679 |
| SinI | GGWCC | 7 cut(s) | 49, 415, 1026, 1364, 1843, 2822, 4240 |
| SmlI | CTYRAG | 3 cut(s) | 32, 797, 2489 |
| SmoI | CTYRAG | 3 cut(s) | 32, 797, 2489 |
| SpeI | ACTAGT | 1 cut(s) | 3026 |
| SphI | GCATGC | 1 cut(s) | 993 |
| SsiI | CCGC | 5 cut(s) | 1196, 1376, 1422, 2767, 2790 |
| SspDI | GGCGCC | 1 cut(s) | 3583 |
| SspMI | CTAG | 4 cut(s) | 1331, 1400, 1610, 3027 |
| StyI | CCWWGG | 7 cut(s) | 1846, 2055, 2101, 2950, 3409, 3880, 4236 |
| TaaI | ACNGT | 8 cut(s) | 1348, 1442, 1685, 1774, 2027, 2435, 4283, 4404 |
| TaiI | ACGT | 2 cut(s) | 321, 925 |
| TaqI | TCGA | 6 cut(s) | 679, 2891, 3350, 3395, 3515, 3821 |
| TatI | WGTACW | 2 cut(s) | 148, 1475 |
| TauI | GCSGC | 1 cut(s) | 1424 |
| TscAI | CASTG | 9 cut(s) | 341, 1326, 1447, 1458, 1557, 1900, 2079, 2817, 2847 |
| TspGWI | ACGGA | 5 cut(s) | 1711, 3184, 3643, 4078, 4114 |
| TspRI | CASTG | 9 cut(s) | 341, 1326, 1447, 1458, 1557, 1900, 2079, 2817, 2847 |
| VpaK11BI | GGWCC | 7 cut(s) | 49, 415, 1026, 1364, 1843, 2822, 4240 |
| VspI | ATTAAT | 1 cut(s) | 2654 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2618 |
| XbaI | TCTAGA | 1 cut(s) | 1399 |
| XceI | RCATGY | 3 cut(s) | 198, 993, 1592 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2201 |
| XmiI | GTMKAC | 4 cut(s) | 2374, 2998, 3457, 3928 |
| XmnI | GAANNNNTTC | 6 cut(s) | 135, 554, 1284, 3105, 3564, 4035 |
| XspI | CTAG | 4 cut(s) | 1331, 1400, 1610, 3027 |