helicase protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MOM1 | PF25029 | 605 - 727 | 6.1e-56 | MOM1-like domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 4783 |
| Acc65I | GGTACC | 2 cut(s) | 3527, 4880 |
| AccB1I | GGYRCC | 3 cut(s) | 3527, 4880, 4979 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 3412, 4525 |
| AccI | GTMKAC | 2 cut(s) | 2025, 3960 |
| AciI | CCGC | 9 cut(s) | 639, 819, 2090, 2113, 2140, 3266, 4035, 4485, 4493 |
| AclI | AACGTT | 2 cut(s) | 2129, 2799 |
| AclWI | GGATC | 5 cut(s) | 200, 2720, 4196, 4470, 5255 |
| AcoI | YGGCCR | 3 cut(s) | 49, 1593, 3947 |
| AcuI | CTGAAG | 9 cut(s) | 431, 2033, 2141, 2835, 3174, 3462, 3687, 4337, 4551 |
| AcvI | CACGTG | 1 cut(s) | 2048 |
| AdeI | CACNNNGTG | 1 cut(s) | 2506 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 3412, 4091, 4374, 4499, 4525, 4877, 4913, 5108, 5109 |
| AflII | CTTAAG | 2 cut(s) | 2555, 4466 |
| AflIII | ACRYGT | 3 cut(s) | 1779, 3818, 5119 |
| AjnI | CCWGG | 5 cut(s) | 356, 1254, 1606, 3187, 4164 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 599, 631, 4415, 4447 |
| Alw21I | GWGCWC | 6 cut(s) | 481, 1156, 2722, 3399, 4687, 4747 |
| Alw26I | GTCTC | 7 cut(s) | 64, 881, 2275, 3089, 3440, 4263, 4337 |
| Alw44I | GTGCAC | 4 cut(s) | 1152, 2718, 4683, 4743 |
| AlwI | GGATC | 5 cut(s) | 200, 2720, 4196, 4470, 5255 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 159, 344, 3485, 4525 |
| Ama87I | CYCGRG | 3 cut(s) | 311, 2528, 3692 |
| AoxI | GGCC | 8 cut(s) | 49, 571, 1593, 3947, 4559, 4958, 5035, 5112 |
| ApaI | GGGCCC | 1 cut(s) | 5116 |
| ApaLI | GTGCAC | 4 cut(s) | 1152, 2718, 4683, 4743 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3088, 3120 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 573, 1089, 1181, 1911, 2300, 2431 |
| Asp718I | GGTACC | 2 cut(s) | 3527, 4880 |
| AspS9I | GGNCC | 4 cut(s) | 2092, 5036, 5112, 5113 |
| AsuC2I | CCSGG | 1 cut(s) | 2882 |
| AsuII | TTCGAA | 2 cut(s) | 594, 3230 |
| AsuNHI | GCTAGC | 3 cut(s) | 635, 4604, 5077 |
| AvaI | CYCGRG | 3 cut(s) | 311, 2528, 3692 |
| AvaII | GGWCC | 1 cut(s) | 2092 |
| BaeGI | GKGCMC | 6 cut(s) | 1156, 2722, 4687, 4747, 4933, 5116 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 4864, 4897 |
| BalI | TGGCCA | 1 cut(s) | 51 |
| BanI | GGYRCC | 3 cut(s) | 3527, 4880, 4979 |
| BanII | GRGCYC | 2 cut(s) | 2997, 5116 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 528, 560 |
| BauI | CACGAG | 1 cut(s) | 891 |
| BbrPI | CACGTG | 1 cut(s) | 2048 |
| BbsI | GAAGAC | 3 cut(s) | 789, 2244, 2912 |
| Bbv12I | GWGCWC | 6 cut(s) | 481, 1156, 2722, 3399, 4687, 4747 |
| BbvCI | CCTCAGC | 1 cut(s) | 4185 |
| BccI | CCATC | 9 cut(s) | 158, 290, 1394, 1637, 2765, 3445, 3554, 3779, 4493 |
| BceAI | ACGGC | 1 cut(s) | 5050 |
| BciT130I | CCWGG | 5 cut(s) | 358, 1256, 1608, 3189, 4166 |
| BciVI | GTATCC | 1 cut(s) | 3853 |
| BclI | TGATCA | 4 cut(s) | 25, 517, 3655, 3871 |
| BcnI | CCSGG | 1 cut(s) | 2882 |
| BcoDI | GTCTC | 7 cut(s) | 64, 881, 2275, 3089, 3440, 4263, 4337 |
| BfrI | CTTAAG | 2 cut(s) | 2555, 4466 |
| BfuAI | ACCTGC | 1 cut(s) | 4783 |
| BfuI | GTATCC | 1 cut(s) | 3853 |
| BglII | AGATCT | 3 cut(s) | 466, 497, 1885 |
| BlpI | GCTNAGC | 1 cut(s) | 2052 |
| BmcAI | AGTACT | 2 cut(s) | 371, 2755 |
| Bme1390I | CCNGG | 6 cut(s) | 358, 1256, 1608, 2882, 3189, 4166 |
| Bme18I | GGWCC | 1 cut(s) | 2092 |
| BmeT110I | CYCGRG | 3 cut(s) | 311, 2528, 3692 |
| BmgT120I | GGNCC | 4 cut(s) | 2092, 5036, 5112, 5113 |
| BmrFI | CCNGG | 6 cut(s) | 358, 1256, 1608, 2882, 3189, 4166 |
| BmrI | ACTGGG | 7 cut(s) | 40, 382, 956, 2766, 3330, 3813, 5288 |
| BmtI | GCTAGC | 3 cut(s) | 639, 4608, 5081 |
| BmuI | ACTGGG | 7 cut(s) | 40, 382, 956, 2766, 3330, 3813, 5288 |
| BoxI | GACNNNNGTC | 2 cut(s) | 304, 3459 |
| BpiI | GAAGAC | 3 cut(s) | 789, 2244, 2912 |
| BpmI | CTGGAG | 3 cut(s) | 1359, 1644, 2676 |
| Bpu10I | CCTNAGC | 1 cut(s) | 4185 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2052 |
| Bpu14I | TTCGAA | 2 cut(s) | 594, 3230 |
| BpuMI | CCSGG | 1 cut(s) | 2882 |
| Bsa29I | ATCGAT | 1 cut(s) | 5209 |
| BsaAI | YACGTR | 1 cut(s) | 2048 |
| BsaI | GGTCTC | 1 cut(s) | 3089 |
| BsaJI | CCNNGG | 3 cut(s) | 4164, 4165, 4909 |
| BsaWI | WCCGGW | 1 cut(s) | 2915 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1638, 1668 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 3412, 4091, 4374, 4499, 4525, 4877, 4913, 5108, 5109 |
| Bse3DI | GCAATG | 5 cut(s) | 105, 618, 843, 1186, 4343 |
| BseBI | CCWGG | 5 cut(s) | 358, 1256, 1608, 3189, 4166 |
| BseCI | ATCGAT | 1 cut(s) | 5209 |
| BseDI | CCNNGG | 3 cut(s) | 4164, 4165, 4909 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 3412, 4091, 4374, 4499, 4525, 4877, 4913, 5108, 5109 |
| BseMI | GCAATG | 5 cut(s) | 105, 618, 843, 1186, 4343 |
| BseRI | GAGGAG | 7 cut(s) | 1070, 1356, 1526, 2387, 3456, 4325, 5139 |
| BseSI | GKGCMC | 6 cut(s) | 1156, 2722, 4687, 4747, 4933, 5116 |
| BseYI | CCCAGC | 7 cut(s) | 4634, 4664, 4694, 4724, 4754, 4933, 4995 |
| BsgI | GTGCAG | 3 cut(s) | 2463, 4032, 5151 |
| BshFI | GGCC | 8 cut(s) | 51, 573, 1595, 3949, 4561, 4960, 5037, 5114 |
| BshNI | GGYRCC | 3 cut(s) | 3527, 4880, 4979 |
| BshVI | ATCGAT | 1 cut(s) | 5209 |
| BsiHKAI | GWGCWC | 6 cut(s) | 481, 1156, 2722, 3399, 4687, 4747 |
| BsiHKCI | CYCGRG | 3 cut(s) | 311, 2528, 3692 |
| BsiSI | CCGG | 2 cut(s) | 2882, 2916 |
| BslFI | GGGAC | 6 cut(s) | 1252, 1459, 2864, 3604, 4183, 4978 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 3412, 4091, 4374, 4499, 4525, 4877, 4913, 5108, 5109 |
| BsmAI | GTCTC | 7 cut(s) | 64, 881, 2275, 3089, 3440, 4263, 4337 |
| BsmFI | GGGAC | 6 cut(s) | 1252, 1459, 2864, 3604, 4183, 4978 |
| BsmI | GAATGC | 5 cut(s) | 223, 283, 322, 3895, 4189 |
| BsnI | GGCC | 8 cut(s) | 51, 573, 1595, 3949, 4561, 4960, 5037, 5114 |
| Bso31I | GGTCTC | 1 cut(s) | 3089 |
| BsoBI | CYCGRG | 3 cut(s) | 311, 2528, 3692 |
| Bsp119I | TTCGAA | 2 cut(s) | 594, 3230 |
| Bsp120I | GGGCCC | 1 cut(s) | 5112 |
| Bsp1286I | GDGCHC | 9 cut(s) | 481, 1156, 2722, 2997, 3399, 4687, 4747, 4933, 5116 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2052 |
| BspACI | CCGC | 9 cut(s) | 639, 819, 2090, 2113, 2140, 3266, 4035, 4485, 4493 |
| BspANI | GGCC | 8 cut(s) | 51, 573, 1595, 3949, 4561, 4960, 5037, 5114 |
| BspDI | ATCGAT | 1 cut(s) | 5209 |
| BspHI | TCATGA | 4 cut(s) | 1926, 3658, 3874, 4261 |
| BspMAI | CTGCAG | 7 cut(s) | 2164, 3274, 3928, 4603, 4614, 4674, 4734 |
| BspMI | ACCTGC | 1 cut(s) | 4783 |
| BspOI | GCTAGC | 3 cut(s) | 639, 4608, 5081 |
| BspPI | GGATC | 5 cut(s) | 200, 2720, 4196, 4470, 5255 |
| BspQI | GCTCTTC | 2 cut(s) | 2484, 2985 |
| BspT104I | TTCGAA | 2 cut(s) | 594, 3230 |
| BspT107I | GGYRCC | 3 cut(s) | 3527, 4880, 4979 |
| BspTI | CTTAAG | 2 cut(s) | 2555, 4466 |
| BspTNI | GGTCTC | 1 cut(s) | 3089 |
| BsrDI | GCAATG | 5 cut(s) | 105, 618, 843, 1186, 4343 |
| BssECI | CCNNGG | 3 cut(s) | 4164, 4165, 4909 |
| BssSI | CACGAG | 1 cut(s) | 891 |
| BssT1I | CCWWGG | 1 cut(s) | 4909 |
| Bst2BI | CACGAG | 1 cut(s) | 891 |
| Bst2UI | CCWGG | 5 cut(s) | 358, 1256, 1608, 3189, 4166 |
| Bst6I | CTCTTC | 5 cut(s) | 1687, 2079, 2484, 2985, 3657 |
| BstAFI | CTTAAG | 2 cut(s) | 2555, 4466 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 2717, 2801, 3215, 4478, 5279 |
| BstBAI | YACGTR | 1 cut(s) | 2048 |
| BstBI | TTCGAA | 2 cut(s) | 594, 3230 |
| BstMAI | GTCTC | 7 cut(s) | 64, 881, 2275, 3089, 3440, 4263, 4337 |
| BstNI | CCWGG | 5 cut(s) | 358, 1256, 1608, 3189, 4166 |
| BstNSI | RCATGY | 5 cut(s) | 1783, 3822, 4157, 4485, 5123 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 304, 3459 |
| BstSCI | CCNGG | 6 cut(s) | 356, 1254, 1606, 2880, 3187, 4164 |
| BstSLI | GKGCMC | 6 cut(s) | 1156, 2722, 4687, 4747, 4933, 5116 |
| BstV2I | GAAGAC | 3 cut(s) | 789, 2244, 2912 |
| BstX2I | RGATCY | 5 cut(s) | 205, 466, 497, 1885, 4462 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 5003 |
| BstYI | RGATCY | 5 cut(s) | 205, 466, 497, 1885, 4462 |
| Bsu15I | ATCGAT | 1 cut(s) | 5209 |
| BsuI | GTATCC | 1 cut(s) | 3853 |
| BsuRI | GGCC | 8 cut(s) | 51, 573, 1595, 3949, 4561, 4960, 5037, 5114 |
| BsuTUI | ATCGAT | 1 cut(s) | 5209 |
| BtsI | GCAGTG | 3 cut(s) | 3216, 3992, 5268 |
| BveI | ACCTGC | 1 cut(s) | 4783 |
| CaiI | CAGNNNCTG | 4 cut(s) | 159, 344, 3485, 4525 |
| CciI | TCATGA | 4 cut(s) | 1926, 3658, 3874, 4261 |
| Cfr13I | GGNCC | 4 cut(s) | 2092, 5036, 5112, 5113 |
| ClaI | ATCGAT | 1 cut(s) | 5209 |
| CpoI | CGGWCCG | 1 cut(s) | 2092 |
| CseI | GACGC | 5 cut(s) | 755, 3120, 3606, 4268, 4448 |
| CsiI | ACCWGGT | 1 cut(s) | 3187 |
| CspI | CGGWCCG | 1 cut(s) | 2092 |
| DraIII | CACNNNGTG | 1 cut(s) | 2506 |
| EaeI | YGGCCR | 3 cut(s) | 49, 1593, 3947 |
| Eam1104I | CTCTTC | 5 cut(s) | 1687, 2079, 2484, 2985, 3657 |
| EarI | CTCTTC | 5 cut(s) | 1687, 2079, 2484, 2985, 3657 |
| EciI | GGCGGA | 2 cut(s) | 2105, 3255 |
| Eco130I | CCWWGG | 1 cut(s) | 4909 |
| Eco147I | AGGCCT | 3 cut(s) | 573, 4561, 4960 |
| Eco24I | GRGCYC | 2 cut(s) | 2997, 5116 |
| Eco31I | GGTCTC | 1 cut(s) | 3089 |
| Eco32I | GATATC | 4 cut(s) | 390, 993, 1854, 1983 |
| Eco47I | GGWCC | 1 cut(s) | 2092 |
| Eco57I | CTGAAG | 9 cut(s) | 431, 2033, 2141, 2835, 3174, 3462, 3687, 4337, 4551 |
| Eco72I | CACGTG | 1 cut(s) | 2048 |
| Eco88I | CYCGRG | 3 cut(s) | 311, 2528, 3692 |
| EcoO109I | RGGNCCY | 1 cut(s) | 5112 |
| EcoRII | CCWGG | 5 cut(s) | 356, 1254, 1606, 3187, 4164 |
| EcoRV | GATATC | 4 cut(s) | 390, 993, 1854, 1983 |
| EcoT14I | CCWWGG | 1 cut(s) | 4909 |
| EcoT22I | ATGCAT | 2 cut(s) | 285, 4460 |
| EcoT38I | GRGCYC | 2 cut(s) | 2997, 5116 |
| ErhI | CCWWGG | 1 cut(s) | 4909 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2538, 2570, 4045, 4077 |
| FaqI | GGGAC | 6 cut(s) | 1252, 1459, 2864, 3604, 4183, 4978 |
| FauI | CCCGC | 1 cut(s) | 826 |
| FauNDI | CATATG | 2 cut(s) | 1392, 5064 |
| FbaI | TGATCA | 4 cut(s) | 25, 517, 3655, 3871 |
| FblI | GTMKAC | 2 cut(s) | 2025, 3960 |
| FriOI | GRGCYC | 2 cut(s) | 2997, 5116 |
| GsaI | CCCAGC | 7 cut(s) | 4638, 4668, 4698, 4728, 4758, 4937, 4999 |
| GsuI | CTGGAG | 3 cut(s) | 1359, 1644, 2676 |
| HaeIII | GGCC | 8 cut(s) | 51, 573, 1595, 3949, 4561, 4960, 5037, 5114 |
| HapII | CCGG | 2 cut(s) | 2882, 2916 |
| HgaI | GACGC | 5 cut(s) | 755, 3120, 3606, 4268, 4448 |
| HincII | GTYRAC | 6 cut(s) | 1133, 2026, 3328, 3824, 4587, 5013 |
| HindII | GTYRAC | 6 cut(s) | 1133, 2026, 3328, 3824, 4587, 5013 |
| HindIII | AAGCTT | 1 cut(s) | 644 |
| HpaII | CCGG | 2 cut(s) | 2882, 2916 |
| Hpy99I | CGWCG | 1 cut(s) | 4335 |
| HpyCH4IV | ACGT | 5 cut(s) | 2047, 2129, 2799, 5137, 5319 |
| HpySE526I | ACGT | 5 cut(s) | 2047, 2129, 2799, 5137, 5319 |
| KpnI | GGTACC | 2 cut(s) | 3531, 4884 |
| Ksp22I | TGATCA | 4 cut(s) | 25, 517, 3655, 3871 |
| LguI | GCTCTTC | 2 cut(s) | 2484, 2985 |
| MabI | ACCWGGT | 1 cut(s) | 3187 |
| MaeII | ACGT | 5 cut(s) | 2047, 2129, 2799, 5137, 5319 |
| MfeI | CAATTG | 4 cut(s) | 582, 2071, 3714, 3905 |
| MflI | RGATCY | 5 cut(s) | 205, 466, 497, 1885, 4462 |
| MhlI | GDGCHC | 9 cut(s) | 481, 1156, 2722, 2997, 3399, 4687, 4747, 4933, 5116 |
| MlsI | TGGCCA | 1 cut(s) | 51 |
| MluNI | TGGCCA | 1 cut(s) | 51 |
| MmeI | TCCRAC | 4 cut(s) | 454, 597, 1973, 4972 |
| Mox20I | TGGCCA | 1 cut(s) | 51 |
| Mph1103I | ATGCAT | 2 cut(s) | 285, 4460 |
| MroXI | GAANNNNTTC | 6 cut(s) | 573, 1089, 1181, 1911, 2300, 2431 |
| MscI | TGGCCA | 1 cut(s) | 51 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1395, 1506, 3126 |
| Msp20I | TGGCCA | 1 cut(s) | 51 |
| MspA1I | CMGCKG | 6 cut(s) | 2542, 3365, 3482, 3896, 3929, 4525 |
| MspCI | CTTAAG | 2 cut(s) | 2555, 4466 |
| MspI | CCGG | 2 cut(s) | 2882, 2916 |
| MspR9I | CCNGG | 6 cut(s) | 358, 1256, 1608, 2882, 3189, 4166 |
| MunI | CAATTG | 4 cut(s) | 582, 2071, 3714, 3905 |
| Mva1269I | GAATGC | 5 cut(s) | 223, 283, 322, 3895, 4189 |
| MvaI | CCWGG | 5 cut(s) | 358, 1256, 1608, 3189, 4166 |
| NciI | CCSGG | 1 cut(s) | 2882 |
| NdeI | CATATG | 2 cut(s) | 1392, 5064 |
| NheI | GCTAGC | 3 cut(s) | 635, 4604, 5077 |
| NmuCI | GTSAC | 6 cut(s) | 306, 950, 1654, 1775, 2683, 2908 |
| NsiI | ATGCAT | 2 cut(s) | 285, 4460 |
| NspI | RCATGY | 5 cut(s) | 1783, 3822, 4157, 4485, 5123 |
| NspV | TTCGAA | 2 cut(s) | 594, 3230 |
| PaeI | GCATGC | 1 cut(s) | 4485 |
| PaeR7I | CTCGAG | 1 cut(s) | 2528 |
| PagI | TCATGA | 4 cut(s) | 1926, 3658, 3874, 4261 |
| PasI | CCCWGGG | 1 cut(s) | 4165 |
| PceI | AGGCCT | 3 cut(s) | 573, 4561, 4960 |
| PciI | ACATGT | 3 cut(s) | 1779, 3818, 5119 |
| PciSI | GCTCTTC | 2 cut(s) | 2484, 2985 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 898 |
| PctI | GAATGC | 5 cut(s) | 223, 283, 322, 3895, 4189 |
| PdmI | GAANNNNTTC | 6 cut(s) | 573, 1089, 1181, 1911, 2300, 2431 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 3412, 4525 |
| PfoI | TCCNGGA | 2 cut(s) | 1254, 2880 |
| PmaCI | CACGTG | 1 cut(s) | 2048 |
| PmlI | CACGTG | 1 cut(s) | 2048 |
| Ppu21I | YACGTR | 1 cut(s) | 2048 |
| PscI | ACATGT | 3 cut(s) | 1779, 3818, 5119 |
| PshAI | GACNNNNGTC | 2 cut(s) | 304, 3459 |
| Psp1406I | AACGTT | 2 cut(s) | 2129, 2799 |
| Psp6I | CCWGG | 5 cut(s) | 356, 1254, 1606, 3187, 4164 |
| PspCI | CACGTG | 1 cut(s) | 2048 |
| PspFI | CCCAGC | 7 cut(s) | 4634, 4664, 4694, 4724, 4754, 4933, 4995 |
| PspGI | CCWGG | 5 cut(s) | 356, 1254, 1606, 3187, 4164 |
| PspOMI | GGGCCC | 1 cut(s) | 5112 |
| PspPI | GGNCC | 4 cut(s) | 2092, 5036, 5112, 5113 |
| PstI | CTGCAG | 7 cut(s) | 2164, 3274, 3928, 4603, 4614, 4674, 4734 |
| PstNI | CAGNNNCTG | 4 cut(s) | 159, 344, 3485, 4525 |
| PsuI | RGATCY | 5 cut(s) | 205, 466, 497, 1885, 4462 |
| PvuII | CAGCTG | 6 cut(s) | 2542, 3365, 3482, 3896, 3929, 4525 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1395, 1506, 3126 |
| Rsr2I | CGGWCCG | 1 cut(s) | 2092 |
| RsrII | CGGWCCG | 1 cut(s) | 2092 |
| SalI | GTCGAC | 1 cut(s) | 2024 |
| SapI | GCTCTTC | 2 cut(s) | 2484, 2985 |
| Sau96I | GGNCC | 4 cut(s) | 2092, 5036, 5112, 5113 |
| ScaI | AGTACT | 2 cut(s) | 371, 2755 |
| ScrFI | CCNGG | 6 cut(s) | 358, 1256, 1608, 2882, 3189, 4166 |
| SduI | GDGCHC | 9 cut(s) | 481, 1156, 2722, 2997, 3399, 4687, 4747, 4933, 5116 |
| SexAI | ACCWGGT | 1 cut(s) | 3187 |
| Sfr274I | CTCGAG | 1 cut(s) | 2528 |
| SfuI | TTCGAA | 2 cut(s) | 594, 3230 |
| SinI | GGWCC | 1 cut(s) | 2092 |
| SlaI | CTCGAG | 1 cut(s) | 2528 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1395, 1506, 3126 |
| SmlI | CTYRAG | 3 cut(s) | 2528, 2555, 4466 |
| SmoI | CTYRAG | 3 cut(s) | 2528, 2555, 4466 |
| SphI | GCATGC | 1 cut(s) | 4485 |
| SseBI | AGGCCT | 3 cut(s) | 573, 4561, 4960 |
| SsiI | CCGC | 9 cut(s) | 639, 819, 2090, 2113, 2140, 3266, 4035, 4485, 4493 |
| SspI | AATATT | 2 cut(s) | 1114, 1460 |
| StuI | AGGCCT | 3 cut(s) | 573, 4561, 4960 |
| StyD4I | CCNGG | 6 cut(s) | 356, 1254, 1606, 2880, 3187, 4164 |
| StyI | CCWWGG | 1 cut(s) | 4909 |
| TaiI | ACGT | 5 cut(s) | 2050, 2132, 2802, 5140, 5322 |
| TaqII | GACCGA | 1 cut(s) | 2716 |
| TatI | WGTACW | 6 cut(s) | 3, 369, 1736, 2753, 3778, 3901 |
| TauI | GCSGC | 2 cut(s) | 642, 4495 |
| TseFI | GTSAC | 6 cut(s) | 306, 950, 1654, 1775, 2683, 2908 |
| Tsp45I | GTSAC | 6 cut(s) | 306, 950, 1654, 1775, 2683, 2908 |
| TspGWI | ACGGA | 5 cut(s) | 277, 1576, 3155, 4839, 4960 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 3412, 4525 |
| Vha464I | CTTAAG | 2 cut(s) | 2555, 4466 |
| VneI | GTGCAC | 4 cut(s) | 1152, 2718, 4683, 4743 |
| VpaK11BI | GGWCC | 1 cut(s) | 2092 |
| XbaI | TCTAGA | 1 cut(s) | 202 |
| XceI | RCATGY | 5 cut(s) | 1783, 3822, 4157, 4485, 5123 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1416 |
| XhoI | CTCGAG | 1 cut(s) | 2528 |
| XmiI | GTMKAC | 2 cut(s) | 2025, 3960 |
| XmnI | GAANNNNTTC | 6 cut(s) | 573, 1089, 1181, 1911, 2300, 2431 |
| ZrmI | AGTACT | 2 cut(s) | 371, 2755 |
| Zsp2I | ATGCAT | 2 cut(s) | 285, 4460 |