Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001065

Physical Location & Seq

Genomic Coordinates Forward (+)

24833016 .. 24846063

Gene Structure 13048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G010660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3879 bp

ATGAAGGTTCATGGTGAACTTCATTTACCCAAGTCAAGTGGCTCTAAAGCACGGAGCAGGTTTACAAAGAGACAACACAAGGGGGAGTGTTCAAACTTGAGAACGACCCAGAAACGAAGCTCCCATTTCTACGACCTCCAATTAAGGATTGTTCAAGTTCAACCCACATCCTTGGTAAGAACAACCCAGTATTTATTTTCAATGATTGCTCTTACTTTTAGTTGGTGCTTTCAGAATTTTCGAGTTGCATTTGTAGGAGACAGAGGAGAGGACAACCCATTTTTTAAAAAGATAATGCCTCCTCTTTTTTCTCCCAGGTTAATGGCTTGTGTAAATAAAATAATTGATCGAAGCTCTGCCTCTACTTCAGATTATTTGGGTAGAAATATCATAGCAACACCAGAAGATAACATGTTTGATTTTGAAGAGAGAATAAAATTGCTTGAGGCTCAGAAGAAGGACCTCCATCCTCTTTTGAGGCCAGACACAATAAAACTATGTGGAATCCTACAACTCTCAGATGCTGCCAAGATTTTGGTTGAACTGCTTCTTGAATATGTACTCAATAACCACCTTATTAGAAGAGAATTAACAATGTTGCAGGCATTTCAGATATCTCTGTGTTGGACTGCAGCGTCATTGCTGAAGCAGAAAGTCAATCACAAAGAATCCCTTGCCTGTGCGAAGAAGCATCTTAACTTCAATTGCAATAAGGACGAGGTGGACTACGTGTATGCAATGCTGCAGTGTCTGAAAAGTACAGCATATTTTAAGGCTGCAGAGTCTCCAAAATTTGCTGAATCATCTTGTAGATGTCCTTTGAAGGACCATTCAGATGCAAAGGTTTCTCACTCTGTCACTTGCAAATTCCACAAGGTCACATCAGAGAATGGAGACTTGTCATTAAATCAAGAATATATAGCACAAAAGGATGTCTCAAAGAGTATCAAACAAATTCAGAAAAAGTTCCAAAAGAAGATGAAAAAATTTAATGATAAGCAATTGAAAGAGAGAAGTGAAATTTTGAGAAGTTACAAGGAAGAGAAGGAAAACCTGGAATTTAAGCACAAAATAGAGTCCATTGTTATTCGAACTTGTTTGTGGAGAAATATATTGCTCAAAAAAGGAAAGCCTAAAATGTGGGAAATTGAACAAGAAAAAGAAGTGGAAGACCATAAACACCGAATGGAAATGCATCTTGAACATCTCAAGAAATTGCAGCTGGAAGCAGCAAGCAAGTTAAAGAAGAAGGAGGACACATGGGTAGAAGAACTGAAAAGATGGGCTCGTGATGAATTGTTTTATAGGCCATCTTTAGATGCACCTGAGTCTGCACATAGCATGACCGGGGGAGTGATGGAATTGTCTAAAACAGCTGATTATGTTACTGATAAAGCTGTAGCATGCAGTCGTCCCATTACAGCAACAACTCCAGCTTGGTCCATTAGCGCCAATTCTGCATTGGATACAATGACTTCTGAGGCTGGTTTATTTACTTCTTGTCATGATCAAGAGAATTTTGTATCTGTAAACTCTTGTGCCAAAAACTTTATTACTATTGGAGGCACTTCTGACAATGTGGAGGTTCTGCTGGATGGTACTGAAATCTGCTCTACTGCTGCTCTAACTGAAGCTATAACCTCCAGTCTTCCTTCATTTGATGAATGCCTTCACAATACAAATCCATTACCCATTTCTGATGCAGTGGTCAGACTAGAAGTGGCTGAAACTGTCAATTCAGTTGATGGTCCACAGCGACCCCTTCTTTTGAATCTGACATCTCTAGAACAGAATCCTATGACCATCAGTACGGGTCATGATTTGTGTAATGTTGCGTCCGAGATCCCACCTTCATGTGAGGAACAAGCTCATGTAATCAGTCCAGTGATGCAAGACAAAGAGGCCAAAACGGGAGTGCATGTGATGTTAGATGATGACCTAGAGAATCTTGTTGCAATGGATTTACCTTCATCTGAAGAACAGATCTCCAAAAGTGCCACAGAAAAGGAGAACAGTCAAGTGCATGAGACTATCAGTTCAAGTCATGATTTGCATAATGTTGTATCTGTGATCCCACCTTCATCTGAAGGACGAAATCTTATGATGAGCATAGCAACTGTGCAAGATAAAGAGGCTGAAGCTGGAGTGCTTGATAAAGAGTCCAATGACTATGCAAGTTTGGGTGAGGACCAAGGGAATCTTGTCAATGTGCATTCATCTTCATCTGAAGAAAAAATCGCTGAAAGCACCTCAGGGAAACTGAATGGTGTAGCACAGATTTTGGCTTCTGATAGTGCAACTCAGGTCAATCAGCAGAACTTAGTTGATTCTGCAGTCAATGGAAACTCTAATCAGGAAATGCCCCTGGACAGTTCACCCTCGGCAGACCAAGACCATGGTACTGATATGTTAGCCACATCAAGTGCAGCACAAGATGGAGATGCACAAGCTTGCGTAAATCAGAATACTCGTCAACCTATGGACTCCCATTTCCACGATGGAATTGAATTTCAGCCAAGTAGTGAAGACTCTGACTTTAATCAAGTTACCCATGTTGCAATGCAATTTAATGCAAACCTCCCTGCTTTTTCAGAACAAACTGGTTTGCAATCTCTGACAAGTTTTTCCTTGAATCAGCCATCTTATGTACCTACTAATGGCTTTGGTCTACCTTTCTCAGACACAAGATCTACATTTGTTACATCTAATTTGCCTCTTCCTTTCAACTGTGATTTGCTTCAAAAGGAATTGGAAAGATTGGGAAGAGAAAGAGAAGAAAACCTCAAGTCTCATGAAAATAAAAAGCTGCAATTGAAATCTGATATGGAGAAGGGGATAGAGGAATTGAAAGCTGAAATTTGTCAAGAGTATGAGACTGAACTCCAACAGATGGAGGCAGAATTTTTCCTTAAAAAGGAAGATTTGCTTGCAGTTCATGGAAAAGTATTAATCCATACGATGTTGGCTCGGGCATGGGATCTGGCTTTCAAGTCCATTGGCAAGGATAACACAGTTTCAAGTTCATCTGGAGTGCATCATGATGGGAATTTTGCTGTTGACCGCCAACTGGTTCAGTCATGTATGCAGCAAAATGCACAAATGCCTTCTCTAGTTTCCAATTCATCTTTGGCCAACCCTCCTGCAGCTTGCAGACAGACAACCCCACTTGCACTGGCAACCAGTCCACACCATGCAGCTCCACTGATACAGAATGTTTTTCTTTTGCCTACTCCGTCTCCTGGCCTTTCTTCGACCAATGCAGCAAGTCACCCCCACATCGGTTCCTTCTCCTCTTCAACAGGAAGAACCCAAGGTAGAGTTGAGATTCGTTCGCCTCTCCCACATCTTCAACCTCGTAGACCTTCAACACCCTTTACTGGAGGTACCAGTCCTTTCTCTCATGAAGATGGGTCATCAAATCAGCAGTCACATAGAAACTCACTTTCGTCATCTCTCCTGGAACTTTTTCTCACAGAGCCCCCAGCGCCCACACGGATGTCTGTTCCCTATAATATGGAACATGATCATGAAACAGCAGAGGAACCTTCAATATCCGTTACTGGTACCAGTCCTGTCTATCAACAATGTAGGGTTATATCAAATCAGCAGCCAGATAGGAATTCCCCTCCAGCTCCTCCATTACTTTCTCCTCATACCCAACGACCCTTGGTCCCCACACAACAATTTGTTCCTGATAATATAGTCCATCACCGTGAAAGTGCCGGAGGATTGCCAGCTCTTCGTAGTGCATCTGCATTGGAGTTGCTTATCGACATGAGCAATCAATCTTCAGGTAGTTGGCGCTCAACACAGAATAGTTCAAGACTTGGACCATCTGGTGGATCCACAGATGTAGTTTGTTTATCAGATGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006342 GO:0006344 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

Chromo Helicase_C SNF2_N

Protein Analysis

1292

Amino Acids

143.26

Weight (kDa)

5.76

Isoelectric Point (pI)

54.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOM1	PF25029	150 - 266	6.5e-44	MOM1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08060 AT1G08060 AT1G08060
fragaria_vesca	FvH4_3g31740 FvH4_3g31740 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540
malus_domestica	MD03G1121600.v1.1 MD11G1139900.v1.1 MD11G1140000.v1.1
prunus_persica	Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104700_v2.0.a1
pyrus_communis	pycom11g11560 pycom11g11580
rosa_chinensis	RchiOBHm_Chr4g0405411 RchiOBHm_Chr5g0058411
rosa_laevigata	RLG00000008844 RLG00000035218
rosa_multiflora	Rmu_sc0000367.1_g000115 Rmu_sc0000575.1_g000013
rosa_roxburghii	Rroxscaffold_1G00022120 Rroxscaffold_1G00022140 Rroxscaffold_5G00349880
rosa_rugosa	Rorug04G0059700 Rorug04G0059800 Rorug04G0059900 Rorug04G0060000 Rorug05G0313800 Rorug05G0313800 Rorug05G0313900 Rorug05G0314000 Rorug05G0314100
rosa_samantha	Rh4AG131700 Rh4BG126600 Rh4CG139100 Rh4DG125700 Rh5AG381300 Rh5BG392800 Rh5CG416900 Rh5DG408000
rosa_wichuraiana	Rw4G010660 Rw5G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	634
Acc36I	ACCTGC	1 cut(s)	48
Acc65I	GGTACC	2 cut(s)	3383, 3563
AccB1I	GGYRCC	2 cut(s)	3383, 3563
AccB7I	CCANNNNNTGG	2 cut(s)	2890, 3839
AccI	GTMKAC	2 cut(s)	2668, 3358
AciI	CCGC	1 cut(s)	3061
AclWI	GGATC	5 cut(s)	1837, 2065, 2985, 3837, 3850
AcoI	YGGCCR	1 cut(s)	3129
AcuI	CTGAAG	8 cut(s)	351, 665, 1650, 1995, 2106, 2157, 2247, 3774
AfaI	GTAC	8 cut(s)	561, 760, 1600, 1810, 2401, 2649, 3385, 3565
AfiI	CCNNNNNNNGG	8 cut(s)	2657, 2890, 2914, 3067, 3239, 3278, 3377, 3839
AflIII	ACRYGT	2 cut(s)	411, 729
AhdI	GACNNNNNGTC	1 cut(s)	3668
AjnI	CCWGG	5 cut(s)	314, 1053, 2364, 3238, 3456
Alw26I	GTCTC	9 cut(s)	64, 252, 789, 888, 940, 2021, 2793, 2867, 3240
AlwI	GGATC	5 cut(s)	1837, 2065, 2985, 3837, 3850
AlwNI	CAGNNNCTG	2 cut(s)	524, 751
Ama87I	CYCGRG	1 cut(s)	2967
AoxI	GGCC	5 cut(s)	479, 1307, 1902, 3129, 3241
ArsI	GACNNNNNNTTYG	2 cut(s)	3410, 3442
AseI	ATTAAT	1 cut(s)	2948
Asp700I	GAANNNNTTC	4 cut(s)	546, 965, 1668, 3465
Asp718I	GGTACC	2 cut(s)	3383, 3563
AspLEI	GCGC	3 cut(s)	1451, 3487, 3804
AspS9I	GGNCC	7 cut(s)	460, 826, 1440, 1748, 2188, 3670, 3830
AsuC2I	CCSGG	1 cut(s)	1348
AsuHPI	GGTGA	5 cut(s)	26, 2195, 2367, 3260, 3701
AsuII	TTCGAA	1 cut(s)	1090
AvaI	CYCGRG	1 cut(s)	2967
AvaII	GGWCC	7 cut(s)	460, 826, 1440, 1748, 2188, 3670, 3830
AxyI	CCTNAGG	1 cut(s)	2251
BalI	TGGCCA	1 cut(s)	3131
BamHI	GGATCC	1 cut(s)	3842
BanI	GGYRCC	2 cut(s)	3383, 3563
BanII	GRGCYC	2 cut(s)	1288, 3480
BauI	CACGAG	1 cut(s)	1287
BbsI	GAAGAC	3 cut(s)	1176, 1640, 2532
BciT130I	CCWGG	5 cut(s)	316, 1055, 2366, 3240, 3458
BciVI	GTATCC	1 cut(s)	1459
BclI	TGATCA	2 cut(s)	1507, 3523
BcnI	CCSGG	1 cut(s)	1348
BcoDI	GTCTC	9 cut(s)	64, 252, 789, 888, 940, 2021, 2793, 2867, 3240
BfaI	CTAG	5 cut(s)	1715, 1784, 1940, 3110, 3877
BfmI	CTRYAG	6 cut(s)	630, 743, 777, 1398, 2331, 3141
BfoI	RGCGCY	3 cut(s)	1452, 3488, 3805
BfuAI	ACCTGC	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	1459
BglII	AGATCT	2 cut(s)	1983, 2687
Bme1390I	CCNGG	6 cut(s)	316, 1055, 1348, 2366, 3240, 3458
Bme18I	GGWCC	7 cut(s)	460, 826, 1440, 1748, 2188, 3670, 3830
BmeRI	GACNNNNNGTC	1 cut(s)	3668
BmeT110I	CYCGRG	1 cut(s)	2967
BmgT120I	GGNCC	7 cut(s)	460, 826, 1440, 1748, 2188, 3670, 3830
BmiI	GGNNCC	6 cut(s)	3283, 3385, 3543, 3565, 3672, 3844
BmrFI	CCNGG	6 cut(s)	316, 1055, 1348, 2366, 3240, 3458
BmrI	ACTGGG	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	181
BpiI	GAAGAC	3 cut(s)	1176, 1640, 2532
BpmI	CTGGAG	6 cut(s)	1416, 1627, 2163, 3048, 3399, 3612
Bpu14I	TTCGAA	1 cut(s)	1090
BpuEI	CTTGAG	4 cut(s)	118, 464, 1193, 2768
BpuMI	CCSGG	1 cut(s)	1348
BsaAI	YACGTR	1 cut(s)	730
BsaJI	CCNNGG	9 cut(s)	171, 314, 1347, 2191, 2364, 2379, 2395, 3310, 3666
BsaXI	ACNNNNNCTCC	4 cut(s)	1905, 1935, 3220, 3250
Bsc4I	CCNNNNNNNGG	8 cut(s)	2657, 2890, 2914, 3067, 3239, 3278, 3377, 3839
Bse21I	CCTNAGG	1 cut(s)	2251
Bse3DI	GCAATG	4 cut(s)	638, 744, 1962, 2565
BseBI	CCWGG	5 cut(s)	316, 1055, 2366, 3240, 3458
BseDI	CCNNGG	9 cut(s)	171, 314, 1347, 2191, 2364, 2379, 2395, 3310, 3666
BseGI	GGATG	5 cut(s)	167, 466, 937, 1600, 3501
BseLI	CCNNNNNNNGG	8 cut(s)	2657, 2890, 2914, 3067, 3239, 3278, 3377, 3839
BseMI	GCAATG	4 cut(s)	638, 744, 1962, 2565
BseMII	CTCAG	7 cut(s)	464, 531, 1317, 1470, 2265, 2315, 2691
BseRI	GAGGAG	5 cut(s)	279, 291, 3280, 3624, 3639
BseYI	CCCAGC	1 cut(s)	3481
BsgI	GTGCAG	2 cut(s)	1317, 2445
BshFI	GGCC	5 cut(s)	481, 1309, 1904, 3131, 3243
BshNI	GGYRCC	2 cut(s)	3383, 3563
BsiHKCI	CYCGRG	1 cut(s)	2967
BsiSI	CCGG	2 cut(s)	1347, 3723
BslFI	GGGAC	2 cut(s)	1398, 3656
BslI	CCNNNNNNNGG	8 cut(s)	2657, 2890, 2914, 3067, 3239, 3278, 3377, 3839
BsmAI	GTCTC	9 cut(s)	64, 252, 789, 888, 940, 2021, 2793, 2867, 3240
BsmBI	CGTCTC	1 cut(s)	3240
BsmFI	GGGAC	2 cut(s)	1398, 3656
BsmI	GAATGC	2 cut(s)	1670, 2212
BsnI	GGCC	5 cut(s)	481, 1309, 1904, 3131, 3243
BsoBI	CYCGRG	1 cut(s)	2967
Bsp119I	TTCGAA	1 cut(s)	1090
Bsp1286I	GDGCHC	2 cut(s)	1288, 3480
Bsp143I	GATC	9 cut(s)	346, 1507, 1842, 1983, 2070, 2687, 2977, 3523, 3842
Bsp19I	CCATGG	1 cut(s)	2395
BspACI	CCGC	1 cut(s)	3061
BspANI	GGCC	5 cut(s)	481, 1309, 1904, 3131, 3243
BspCNI	CTCAG	7 cut(s)	463, 530, 1318, 1471, 2264, 2314, 2690
BspHI	TCATGA	7 cut(s)	1504, 1816, 2044, 2791, 3037, 3400, 3526
BspLI	GGNNCC	6 cut(s)	3283, 3385, 3543, 3565, 3672, 3844
BspMAI	CTGCAG	5 cut(s)	634, 747, 781, 2335, 3145
BspMI	ACCTGC	1 cut(s)	48
BspPI	GGATC	5 cut(s)	1837, 2065, 2985, 3837, 3850
BspQI	GCTCTTC	1 cut(s)	3744
BspT104I	TTCGAA	1 cut(s)	1090
BspT107I	GGYRCC	2 cut(s)	3383, 3563
BsrDI	GCAATG	4 cut(s)	638, 744, 1962, 2565
BssECI	CCNNGG	9 cut(s)	171, 314, 1347, 2191, 2364, 2379, 2395, 3310, 3666
BssMI	GATC	9 cut(s)	346, 1507, 1842, 1983, 2070, 2687, 2977, 3523, 3842
BssSI	CACGAG	1 cut(s)	1287
BssT1I	CCWWGG	5 cut(s)	171, 2191, 2395, 3310, 3666
Bst2BI	CACGAG	1 cut(s)	1287
Bst2UI	CCWGG	5 cut(s)	316, 1055, 2366, 3240, 3458
Bst4CI	ACNGT	7 cut(s)	1732, 2015, 2119, 2372, 2729, 3013, 3713
Bst6I	CTCTTC	7 cut(s)	420, 577, 1035, 2721, 2758, 3298, 3744
BstBAI	YACGTR	1 cut(s)	730
BstBI	TTCGAA	1 cut(s)	1090
BstC8I	GCNNGC	7 cut(s)	603, 1234, 1405, 2452, 2928, 3148, 3735
BstDEI	CTNAG	8 cut(s)	450, 517, 1326, 1479, 2251, 2301, 2320, 2677
BstDSI	CCRYGG	1 cut(s)	2395
BstENI	CCTNNNNNAGG	1 cut(s)	2912
BstF5I	GGATG	5 cut(s)	167, 466, 937, 1600, 3501
BstH2I	RGCGCY	3 cut(s)	1452, 3488, 3805
BstHHI	GCGC	3 cut(s)	1451, 3487, 3804
BstKTI	GATC	9 cut(s)	349, 1510, 1845, 1986, 2073, 2690, 2980, 3526, 3845
BstMAI	GTCTC	9 cut(s)	64, 252, 789, 888, 940, 2021, 2793, 2867, 3240
BstMBI	GATC	9 cut(s)	346, 1507, 1842, 1983, 2070, 2687, 2977, 3523, 3842
BstMWI	GCNNNNNNNGC	2 cut(s)	1457, 3484
BstNI	CCWGG	5 cut(s)	316, 1055, 2366, 3240, 3458
BstNSI	RCATGY	3 cut(s)	415, 1407, 1922
BstSCI	CCNGG	6 cut(s)	314, 1053, 1346, 2364, 3238, 3456
BstSFI	CTRYAG	6 cut(s)	630, 743, 777, 1398, 2331, 3141
BstV2I	GAAGAC	3 cut(s)	1176, 1640, 2532
BstX2I	RGATCY	5 cut(s)	1842, 1983, 2687, 2977, 3842
BstXI	CCANNNNNNTGG	4 cut(s)	172, 322, 535, 2396
BstYI	RGATCY	5 cut(s)	1842, 1983, 2687, 2977, 3842
Bsu36I	CCTNAGG	1 cut(s)	2251
BsuI	GTATCC	1 cut(s)	1459
BsuRI	GGCC	5 cut(s)	481, 1309, 1904, 3131, 3243
BtgI	CCRYGG	1 cut(s)	2395
BtsCI	GGATG	5 cut(s)	167, 466, 937, 1600, 3501
BtsI	GCAGTG	2 cut(s)	752, 1710
BtsIMutI	CAGTG	5 cut(s)	752, 1710, 1890, 3170, 3200
BveI	ACCTGC	1 cut(s)	48
Cac8I	GCNNGC	7 cut(s)	603, 1234, 1405, 2452, 2928, 3148, 3735
CaiI	CAGNNNCTG	2 cut(s)	524, 751
CciI	TCATGA	7 cut(s)	1504, 1816, 2044, 2791, 3037, 3400, 3526
CfoI	GCGC	3 cut(s)	1451, 3487, 3804
Cfr13I	GGNCC	7 cut(s)	460, 826, 1440, 1748, 2188, 3670, 3830
CseI	GACGC	2 cut(s)	624, 1824
Csp6I	GTAC	8 cut(s)	560, 759, 1599, 1809, 2400, 2648, 3384, 3564
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviQI	GTAC	8 cut(s)	560, 759, 1599, 1809, 2400, 2648, 3384, 3564
DdeI	CTNAG	8 cut(s)	450, 517, 1326, 1479, 2251, 2301, 2320, 2677
DpnI	GATC	9 cut(s)	348, 1509, 1844, 1985, 2072, 2689, 2979, 3525, 3844
DpnII	GATC	9 cut(s)	346, 1507, 1842, 1983, 2070, 2687, 2977, 3523, 3842
DraI	TTTAAA	1 cut(s)	286
DrdI	GACNNNNNNGTC	1 cut(s)	634
DriI	GACNNNNNGTC	1 cut(s)	3668
DseDI	GACNNNNNNGTC	1 cut(s)	634
EaeI	YGGCCR	1 cut(s)	3129
Eam1104I	CTCTTC	7 cut(s)	420, 577, 1035, 2721, 2758, 3298, 3744
Eam1105I	GACNNNNNGTC	1 cut(s)	3668
EarI	CTCTTC	7 cut(s)	420, 577, 1035, 2721, 2758, 3298, 3744
Eco130I	CCWWGG	5 cut(s)	171, 2191, 2395, 3310, 3666
Eco24I	GRGCYC	2 cut(s)	1288, 3480
Eco32I	GATATC	1 cut(s)	615
Eco47I	GGWCC	7 cut(s)	460, 826, 1440, 1748, 2188, 3670, 3830
Eco57I	CTGAAG	8 cut(s)	351, 665, 1650, 1995, 2106, 2157, 2247, 3774
Eco81I	CCTNAGG	1 cut(s)	2251
Eco88I	CYCGRG	1 cut(s)	2967
EcoNI	CCTNNNNNAGG	1 cut(s)	2912
EcoO109I	RGGNCCY	1 cut(s)	460
EcoRI	GAATTC	1 cut(s)	3619
EcoRII	CCWGG	5 cut(s)	314, 1053, 2364, 3238, 3456
EcoRV	GATATC	1 cut(s)	615
EcoT14I	CCWWGG	5 cut(s)	171, 2191, 2395, 3310, 3666
EcoT22I	ATGCAT	1 cut(s)	1197
EcoT38I	GRGCYC	2 cut(s)	1288, 3480
ErhI	CCWWGG	5 cut(s)	171, 2191, 2395, 3310, 3666
Esp3I	CGTCTC	1 cut(s)	3240
FalI	AAGNNNNNCTT	6 cut(s)	657, 689, 2184, 2216, 2910, 2942
FaqI	GGGAC	2 cut(s)	1398, 3656
FbaI	TGATCA	2 cut(s)	1507, 3523
FblI	GTMKAC	2 cut(s)	2668, 3358
FokI	GGATG	5 cut(s)	154, 453, 944, 1607, 3508
FriOI	GRGCYC	2 cut(s)	1288, 3480
FspBI	CTAG	5 cut(s)	1715, 1784, 1940, 3110, 3877
GlaI	GCGC	3 cut(s)	1450, 3486, 3803
GsaI	CCCAGC	1 cut(s)	3485
GsuI	CTGGAG	6 cut(s)	1416, 1627, 2163, 3048, 3399, 3612
HaeII	RGCGCY	3 cut(s)	1452, 3488, 3805
HaeIII	GGCC	5 cut(s)	481, 1309, 1904, 3131, 3243
HapII	CCGG	2 cut(s)	1347, 3723
HgaI	GACGC	2 cut(s)	624, 1824
HhaI	GCGC	3 cut(s)	1451, 3487, 3804
Hin6I	GCGC	3 cut(s)	1449, 3485, 3802
HinP1I	GCGC	3 cut(s)	1449, 3485, 3802
HincII	GTYRAC	2 cut(s)	2474, 3058
HindII	GTYRAC	2 cut(s)	2474, 3058
HindIII	AAGCTT	1 cut(s)	2448
HpaII	CCGG	2 cut(s)	1347, 3723
HphI	GGTGA	5 cut(s)	26, 2195, 2367, 3260, 3701
HpyCH4III	ACNGT	7 cut(s)	1732, 2015, 2119, 2372, 2729, 3013, 3713
HpyCH4IV	ACGT	1 cut(s)	729
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1457, 3484
HpyF3I	CTNAG	8 cut(s)	450, 517, 1326, 1479, 2251, 2301, 2320, 2677
HpySE526I	ACGT	1 cut(s)	729
HspAI	GCGC	3 cut(s)	1449, 3485, 3802
KpnI	GGTACC	2 cut(s)	3387, 3567
Ksp22I	TGATCA	2 cut(s)	1507, 3523
Kzo9I	GATC	9 cut(s)	346, 1507, 1842, 1983, 2070, 2687, 2977, 3523, 3842
LguI	GCTCTTC	1 cut(s)	3744
LmnI	GCTCC	4 cut(s)	54, 125, 3202, 3637
MaeI	CTAG	5 cut(s)	1715, 1784, 1940, 3110, 3877
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	9 cut(s)	856, 877, 1031, 1384, 2545, 2698, 3266, 3426, 3556
MalI	GATC	9 cut(s)	348, 1509, 1844, 1985, 2072, 2689, 2979, 3525, 3844
MboI	GATC	9 cut(s)	346, 1507, 1842, 1983, 2070, 2687, 2977, 3523, 3842
MfeI	CAATTG	3 cut(s)	703, 1001, 2810
MflI	RGATCY	5 cut(s)	1842, 1983, 2687, 2977, 3842
MhlI	GDGCHC	2 cut(s)	1288, 3480
MlsI	TGGCCA	1 cut(s)	3131
MluNI	TGGCCA	1 cut(s)	3131
MlyI	GAGTC	6 cut(s)	791, 1085, 1337, 2168, 2477, 2522
MmeI	TCCRAC	2 cut(s)	605, 2908
Mox20I	TGGCCA	1 cut(s)	3131
Mph1103I	ATGCAT	1 cut(s)	1197
MroXI	GAANNNNTTC	4 cut(s)	546, 965, 1668, 3465
MscI	TGGCCA	1 cut(s)	3131
MslI	CAYNNNNRTG	7 cut(s)	834, 1852, 3039, 3405, 3494, 3525, 3711
Msp20I	TGGCCA	1 cut(s)	3131
MspA1I	CMGCKG	2 cut(s)	1222, 1376
MspI	CCGG	2 cut(s)	1347, 3723
MspR9I	CCNGG	6 cut(s)	316, 1055, 1348, 2366, 3240, 3458
MunI	CAATTG	3 cut(s)	703, 1001, 2810
Mva1269I	GAATGC	2 cut(s)	1670, 2212
MvaI	CCWGG	5 cut(s)	316, 1055, 2366, 3240, 3458
MwoI	GCNNNNNNNGC	2 cut(s)	1457, 3484
NciI	CCSGG	1 cut(s)	1348
NcoI	CCATGG	1 cut(s)	2395
NdeII	GATC	9 cut(s)	346, 1507, 1842, 1983, 2070, 2687, 2977, 3523, 3842
NlaIV	GGNNCC	6 cut(s)	3283, 3385, 3543, 3565, 3672, 3844
NmeAIII	GCCGAG	1 cut(s)	2360
NmuCI	GTSAC	4 cut(s)	856, 877, 3266, 3426
NsiI	ATGCAT	1 cut(s)	1197
NspI	RCATGY	3 cut(s)	415, 1407, 1922
NspV	TTCGAA	1 cut(s)	1090
PaeI	GCATGC	1 cut(s)	1407
PagI	TCATGA	7 cut(s)	1504, 1816, 2044, 2791, 3037, 3400, 3526
PciI	ACATGT	1 cut(s)	411
PciSI	GCTCTTC	1 cut(s)	3744
PctI	GAATGC	2 cut(s)	1670, 2212
PdmI	GAANNNNTTC	4 cut(s)	546, 965, 1668, 3465
PflMI	CCANNNNNTGG	2 cut(s)	2890, 3839
PfoI	TCCNGGA	1 cut(s)	3456
PleI	GAGTC	6 cut(s)	790, 1084, 1336, 2167, 2477, 2522
PpsI	GAGTC	6 cut(s)	790, 1084, 1336, 2167, 2477, 2522
Ppu21I	YACGTR	1 cut(s)	730
PpuMI	RGGWCCY	1 cut(s)	460
PscI	ACATGT	1 cut(s)	411
PshBI	ATTAAT	1 cut(s)	2948
Psp5II	RGGWCCY	1 cut(s)	460
Psp6I	CCWGG	5 cut(s)	314, 1053, 2364, 3238, 3456
PspFI	CCCAGC	1 cut(s)	3481
PspGI	CCWGG	5 cut(s)	314, 1053, 2364, 3238, 3456
PspN4I	GGNNCC	6 cut(s)	3283, 3385, 3543, 3565, 3672, 3844
PspPI	GGNCC	7 cut(s)	460, 826, 1440, 1748, 2188, 3670, 3830
PspPPI	RGGWCCY	1 cut(s)	460
PsrI	GAACNNNNNNTAC	2 cut(s)	9, 41
PstI	CTGCAG	5 cut(s)	634, 747, 781, 2335, 3145
PstNI	CAGNNNCTG	2 cut(s)	524, 751
PsuI	RGATCY	5 cut(s)	1842, 1983, 2687, 2977, 3842
PvuII	CAGCTG	2 cut(s)	1222, 1376
RsaI	GTAC	8 cut(s)	561, 760, 1600, 1810, 2401, 2649, 3385, 3565
RsaNI	GTAC	8 cut(s)	560, 759, 1599, 1809, 2400, 2648, 3384, 3564
RseI	CAYNNNNRTG	7 cut(s)	834, 1852, 3039, 3405, 3494, 3525, 3711
SapI	GCTCTTC	1 cut(s)	3744
Sau3AI	GATC	9 cut(s)	346, 1507, 1842, 1983, 2070, 2687, 2977, 3523, 3842
Sau96I	GGNCC	7 cut(s)	460, 826, 1440, 1748, 2188, 3670, 3830
SchI	GAGTC	6 cut(s)	791, 1085, 1337, 2168, 2477, 2522
ScrFI	CCNGG	6 cut(s)	316, 1055, 1348, 2366, 3240, 3458
SduI	GDGCHC	2 cut(s)	1288, 3480
SfcI	CTRYAG	6 cut(s)	630, 743, 777, 1398, 2331, 3141
SfuI	TTCGAA	1 cut(s)	1090
SinI	GGWCC	7 cut(s)	460, 826, 1440, 1748, 2188, 3670, 3830
SmiMI	CAYNNNNRTG	7 cut(s)	834, 1852, 3039, 3405, 3494, 3525, 3711
SmlI	CTYRAG	4 cut(s)	97, 443, 1208, 2783
SmoI	CTYRAG	4 cut(s)	97, 443, 1208, 2783
SphI	GCATGC	1 cut(s)	1407
SsiI	CCGC	1 cut(s)	3061
SspMI	CTAG	5 cut(s)	1715, 1784, 1940, 3110, 3877
StyD4I	CCNGG	6 cut(s)	314, 1053, 1346, 2364, 3238, 3456
StyI	CCWWGG	5 cut(s)	171, 2191, 2395, 3310, 3666
TaaI	ACNGT	7 cut(s)	1732, 2015, 2119, 2372, 2729, 3013, 3713
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	5 cut(s)	241, 349, 1090, 3251, 3771
TatI	WGTACW	2 cut(s)	559, 758
TscAI	CASTG	5 cut(s)	752, 1710, 1890, 3177, 3207
TseFI	GTSAC	4 cut(s)	856, 877, 3266, 3426
Tsp45I	GTSAC	4 cut(s)	856, 877, 3266, 3426
TspGWI	ACGGA	4 cut(s)	67, 3222, 3508, 3544
TspRI	CASTG	5 cut(s)	752, 1710, 1890, 3177, 3207
Van91I	CCANNNNNTGG	2 cut(s)	2890, 3839
VpaK11BI	GGWCC	7 cut(s)	460, 826, 1440, 1748, 2188, 3670, 3830
VspI	ATTAAT	1 cut(s)	2948
XagI	CCTNNNNNAGG	1 cut(s)	2912
XbaI	TCTAGA	1 cut(s)	1783
XceI	RCATGY	3 cut(s)	415, 1407, 1922
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1459, 2495, 3124
XmiI	GTMKAC	2 cut(s)	2668, 3358
XmnI	GAANNNNTTC	4 cut(s)	546, 965, 1668, 3465
XspI	CTAG	5 cut(s)	1715, 1784, 1940, 3110, 3877
Zsp2I	ATGCAT	1 cut(s)	1197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.