Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001065

Physical Location & Seq

Genomic Coordinates Forward (+)

9348284 .. 9350283

Gene Structure 2000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0059800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCTGATCAGGTGAGGCTATTTGGAACATGGTGTAGTCCATTTAGTACACGGGTTATATGGGCTCTGAAGCTGAAAGGGATTCCATATGATTACATCGAGGAAGATCTTCCCTACAAGAAAAGTGCTCAACTTCTCAAGTACAACCCAGTTCACAAGAAGATCCCAGTTCTTGTTCATGGAGAAAAGCCGATTTGCGAGTCCATGGTCATCGTTGAATATATAGAAGAAACATGGCTGCAGAACCCTTTGCTTCCCAGTGACCCTTACGGGAGAGCCATGGCCAGGTTCTGGGTTAAGTTTGCTGAAGATACGGCTCCTGCAATTTGGATGGTCTTTCGAACTACAGGCGAGGAGCATGAGAAAGCCAAGAAAGAGGTTTTGGAGATGCTGAGAACCATTGAAGAGCACGCAGGTCTTGATAAGAAGAGATTTTTCGGAGGAGACAACATTGGAATTGTGGACATAGCCTTTGGACAGATTGCTCGATGGTTTGGAGTCATTGAAGAAGTAGTTGGGATGGAGCTACTTGAACCCCATGCCTTTCCTCACGTTCATGCATGGACGAACAACTTCAAAGACGTGCCTGCAATCAAAGGAAACCTTCCTGATCATGACAGAATGGTTGCCTTCTATAAGCCATTCAGGGAAAGCTTGCTGGCTTCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006342 GO:0006344 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

223

Amino Acids

25.72

Weight (kDa)

6.08

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	4 - 77	2.7e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	7 - 78	2.6e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	13 - 78	3.2e-17	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	117 - 192	3.9e-09	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	119 - 189	3.4e-08	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08060 AT1G08060 AT1G08060
fragaria_vesca	FvH4_3g31740 FvH4_3g31740 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540
malus_domestica	MD03G1121600.v1.1 MD11G1139900.v1.1 MD11G1140000.v1.1
prunus_persica	Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104700_v2.0.a1
pyrus_communis	pycom11g11560 pycom11g11580
rosa_chinensis	RchiOBHm_Chr4g0405411 RchiOBHm_Chr5g0058411
rosa_laevigata	RLG00000008844 RLG00000035218
rosa_multiflora	Rmu_sc0000367.1_g000115 Rmu_sc0000575.1_g000013
rosa_roxburghii	Rroxscaffold_1G00022120 Rroxscaffold_1G00022140 Rroxscaffold_5G00349880
rosa_rugosa	Rorug04G0059700 Rorug04G0059800 Rorug04G0059900 Rorug04G0060000 Rorug05G0313800 Rorug05G0313800 Rorug05G0313900 Rorug05G0314000 Rorug05G0314100
rosa_samantha	Rh4AG131700 Rh4BG126600 Rh4CG139100 Rh4DG125700 Rh5AG381300 Rh5BG392800 Rh5CG416900 Rh5DG408000
rosa_wichuraiana	Rw4G010660 Rw5G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	404
AccB7I	CCANNNNNTGG	1 cut(s)	291
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	282
AcuI	CTGAAG	2 cut(s)	89, 327
AfaI	GTAC	2 cut(s)	49, 143
AfiI	CCNNNNNNNGG	2 cut(s)	285, 291
AgsI	TTSAA	5 cut(s)	218, 404, 506, 533, 577
AjiI	CACGTC	1 cut(s)	583
AjnI	CCWGG	1 cut(s)	284
AjuI	GAANNNNNNNTTGG	4 cut(s)	365, 397, 498, 530
AluBI	AGCT	3 cut(s)	73, 526, 654
AluI	AGCT	3 cut(s)	73, 526, 654
Alw21I	GWGCWC	2 cut(s)	130, 411
Alw26I	GTCTC	1 cut(s)	438
AlwI	GGATC	1 cut(s)	157
AlwNI	CAGNNNCTG	1 cut(s)	291
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	1 cut(s)	238
ArsI	GACNNNNNNTTYG	2 cut(s)	455, 487
Asp700I	GAANNNNTTC	2 cut(s)	108, 572
AsuHPI	GGTGA	1 cut(s)	25
AsuII	TTCGAA	1 cut(s)	340
BalI	TGGCCA	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	67
Bbv12I	GWGCWC	2 cut(s)	130, 411
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	3 cut(s)	325, 483, 514
BceAI	ACGGC	1 cut(s)	330
BciT130I	CCWGG	1 cut(s)	286
BclI	TGATCA	2 cut(s)	7, 610
BcoDI	GTCTC	1 cut(s)	438
BfmI	CTRYAG	2 cut(s)	239, 345
BfuAI	ACCTGC	1 cut(s)	404
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	286
BmgBI	CACGTC	1 cut(s)	583
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	1 cut(s)	286
BmrI	ACTGGG	3 cut(s)	143, 161, 252
BmsI	GCATC	1 cut(s)	378
BmuI	ACTGGG	3 cut(s)	143, 161, 252
Bpu14I	TTCGAA	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	204, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 291
Bse1I	ACTGG	3 cut(s)	149, 167, 258
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	2 cut(s)	204, 279
BseGI	GGATG	2 cut(s)	336, 525
BseLI	CCNNNNNNNGG	2 cut(s)	285, 291
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	3 cut(s)	149, 167, 258
BseRI	GAGGAG	2 cut(s)	368, 456
BseXI	GCAGC	1 cut(s)	225
BshFI	GGCC	1 cut(s)	284
BsiHKAI	GWGCWC	2 cut(s)	130, 411
BslI	CCNNNNNNNGG	2 cut(s)	285, 291
BsmAI	GTCTC	1 cut(s)	438
BsnI	GGCC	1 cut(s)	284
Bsp119I	TTCGAA	1 cut(s)	340
Bsp1286I	GDGCHC	3 cut(s)	67, 130, 411
Bsp143I	GATC	4 cut(s)	7, 106, 162, 610
Bsp19I	CCATGG	2 cut(s)	204, 279
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	384
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	1 cut(s)	318
BspMAI	CTGCAG	1 cut(s)	243
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	1 cut(s)	157
BspQI	GCTCTTC	1 cut(s)	399
BspT104I	TTCGAA	1 cut(s)	340
BsrI	ACTGG	3 cut(s)	149, 167, 258
BssECI	CCNNGG	2 cut(s)	204, 279
BssMI	GATC	4 cut(s)	7, 106, 162, 610
BssT1I	CCWWGG	2 cut(s)	204, 279
Bst2UI	CCWGG	1 cut(s)	286
Bst6I	CTCTTC	2 cut(s)	399, 422
BstBI	TTCGAA	1 cut(s)	340
BstC8I	GCNNGC	4 cut(s)	411, 588, 656, 660
BstDEI	CTNAG	1 cut(s)	392
BstDSI	CCRYGG	2 cut(s)	204, 279
BstF5I	GGATG	2 cut(s)	336, 525
BstKTI	GATC	4 cut(s)	10, 109, 165, 613
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	4 cut(s)	7, 106, 162, 610
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	284
BstSFI	CTRYAG	2 cut(s)	239, 345
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	2 cut(s)	106, 162
BstYI	RGATCY	2 cut(s)	106, 162
BsuRI	GGCC	1 cut(s)	284
BtgI	CCRYGG	2 cut(s)	204, 279
BtrI	CACGTC	1 cut(s)	583
BtsCI	GGATG	2 cut(s)	336, 525
BtsIMutI	CAGTG	1 cut(s)	265
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	4 cut(s)	411, 588, 656, 660
CaiI	CAGNNNCTG	1 cut(s)	291
CciI	TCATGA	1 cut(s)	613
Csp6I	GTAC	2 cut(s)	48, 142
CviQI	GTAC	2 cut(s)	48, 142
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	4 cut(s)	9, 108, 164, 612
DpnII	GATC	4 cut(s)	7, 106, 162, 610
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	2 cut(s)	399, 422
EarI	CTCTTC	2 cut(s)	399, 422
Eco130I	CCWWGG	2 cut(s)	204, 279
Eco24I	GRGCYC	1 cut(s)	67
Eco57I	CTGAAG	2 cut(s)	89, 327
EcoRII	CCWGG	1 cut(s)	284
EcoT14I	CCWWGG	2 cut(s)	204, 279
EcoT22I	ATGCAT	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	2 cut(s)	204, 279
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FauNDI	CATATG	1 cut(s)	88
FbaI	TGATCA	2 cut(s)	7, 610
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	2 cut(s)	343, 532
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	284
HindIII	AAGCTT	1 cut(s)	652
HinfI	GANTC	3 cut(s)	82, 200, 498
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	3 cut(s)	50, 154, 463
Hpy188I	TCNGA	2 cut(s)	69, 440
Hpy188III	TCNNGA	4 cut(s)	419, 608, 614, 669
Hpy8I	GTNNAC	3 cut(s)	50, 154, 463
HpyAV	CCTTC	2 cut(s)	614, 640
HpyCH4IV	ACGT	2 cut(s)	552, 582
HpyCH4V	TGCA	4 cut(s)	241, 323, 560, 590
HpyF3I	CTNAG	1 cut(s)	392
HpySE526I	ACGT	2 cut(s)	552, 582
Ksp22I	TGATCA	2 cut(s)	7, 610
Kzo9I	GATC	4 cut(s)	7, 106, 162, 610
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	3 cut(s)	322, 355, 523
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	1 cut(s)	378
MaeII	ACGT	2 cut(s)	552, 582
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	4 cut(s)	9, 108, 164, 612
MboI	GATC	4 cut(s)	7, 106, 162, 610
MboII	GAAGA	9 cut(s)	101, 116, 172, 239, 320, 416, 439, 518, 657
MflI	RGATCY	2 cut(s)	106, 162
MhlI	GDGCHC	3 cut(s)	67, 130, 411
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	2 cut(s)	324, 456
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	2 cut(s)	209, 507
MnlI	CCTC	6 cut(s)	9, 94, 346, 370, 434, 558
Mox20I	TGGCCA	1 cut(s)	284
Mph1103I	ATGCAT	1 cut(s)	562
MroXI	GAANNNNTTC	2 cut(s)	108, 572
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	555
Msp20I	TGGCCA	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
NcoI	CCATGG	2 cut(s)	204, 279
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	4 cut(s)	7, 106, 162, 610
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	260
NsiI	ATGCAT	1 cut(s)	562
NspV	TTCGAA	1 cut(s)	340
PagI	TCATGA	1 cut(s)	613
PciSI	GCTCTTC	1 cut(s)	399
PdmI	GAANNNNTTC	2 cut(s)	108, 572
PfeI	GAWTC	1 cut(s)	82
PflMI	CCANNNNNTGG	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	2 cut(s)	208, 506
PpsI	GAGTC	2 cut(s)	208, 506
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	318
PstI	CTGCAG	1 cut(s)	243
PstNI	CAGNNNCTG	1 cut(s)	291
PsuI	RGATCY	2 cut(s)	106, 162
RsaI	GTAC	2 cut(s)	49, 143
RsaNI	GTAC	2 cut(s)	48, 142
RseI	CAYNNNNRTG	1 cut(s)	555
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	4 cut(s)	7, 106, 162, 610
SchI	GAGTC	2 cut(s)	209, 507
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	3 cut(s)	67, 130, 411
SfaNI	GCATC	1 cut(s)	378
SfcI	CTRYAG	2 cut(s)	239, 345
SfuI	TTCGAA	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	324, 456
StyD4I	CCNGG	1 cut(s)	284
StyI	CCWWGG	2 cut(s)	204, 279
TaiI	ACGT	2 cut(s)	555, 585
TaqI	TCGA	3 cut(s)	99, 340, 487
TasI	AATT	2 cut(s)	324, 456
TatI	WGTACW	2 cut(s)	47, 141
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	167, 545
TspRI	CASTG	1 cut(s)	265
Van91I	CCANNNNNTGG	1 cut(s)	291
XmnI	GAANNNNTTC	2 cut(s)	108, 572
Zsp2I	ATGCAT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.