Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001065

Physical Location & Seq

Genomic Coordinates Forward (+)

27606874 .. 27618189

Gene Structure 11316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG139100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4860 bp

ATGGTGGCCGGAGTACCAGGACCTGGTGGGTCTCCGATGTATGAATCAGAATTGACTCCGACGACGTCCATTCAAAACATGGAATCAAGTCGTATCATCCAATGGCTGAGATCTCTTAATCACTTAGGGGCAACCAGATCTCCTGAGACCACATCAGGTGACCCCCCACCTGGGTGGGTAGAAGAATTTTCGCAAACCGATCTGGGATTGTTCAAGTTCAACCCAAATCCTTGGTTAATGGCTTGTGTAAATAAAATAATTGATCGAAGCTCTGCCTCTACTTCAGATAATTTGGTTAGAAATATCATAGCAACACCAGAAGATAACATGTTTGAATTTGAAGACAGAATAAAATTGCTTGAGGCTCAGAAGAAGGACCTCCATCCTCTTTTGAGGCCAGACACAATAAAACTATGTGGAATCCTACAACTCTCAGATGCTGCCAAGATTTTCGTTGAACTGCTTCTTGAATATGTACTCAATAACCACCTTATTAAAAGAGAATTAACAATGTTGCAGGCATTTCAGATATCTCTGTGTTGGACTGCAGCGTCATTGCTGAAGCAGAAAGTCAATCACAAAGAATCCCTTGCCTGTGCGAAGAAGCATCTTAACTTCAATTGCAATAAGGACGAGGTGGACTACGTGTATGCAATGCTGCAGTGTCTGAAAAGTACAGCATATTTTAAGGCTGCAGAGTCTCCAAAATTTGCTGAATCATCTTGTAGATGTCCTTTGAAGGACCATTCAGATGCAAAGGTTTCTCACTCTGTCACTTGCAAATTCCACAAGGTCACATCAGAGAATGGAGACTTGTCACTAAATCAAGAATATATAGCGCAAAAGGATGTCTCAAAGAGTATCAAACAAATTCAGAAAAAGTTCCAAAAGAAGATGAAAAAATTTAATGATAAGCAATTGAAAGAGAGAAGTGAAATTTTGAGAAGTTACAAGGAAGAGAAGGAAAACCTGGAATTTAAGCACAAAATAGAGTCCATTGTTATTCGAACTTGTTTGTGGAGAAATATATTGCTCAAAAAAGGTAAGCCTAAAATGTGGGAAATTGAACAAGAAAAAGAAGTGGAAGACCATAAACACCAAATGGAAATGCGTCTTGAACATCTCAAGAAATTGCAGCTGGAAGCAGCAAGCAAGTTAAAGAAGAAGGAGGACACATGGGTAGAAGAATTGAAAAGATGGGCTCGTGATGAATTGTTTTATAGGCCATCTTTAGATGCACCTGAGTCTGCACATAGCATGACCGGGGGAGTGATGGAATTGTCTAAAACAGCTGATTATGTTACTGATAAAGCTGTAGCATGCTGTCGTCCCATTACAGCAACAACTCCAGCTTGGTCCATTAGCGCCAATTCTGCATTAGATACAATGACTTCTGAGGCTGGTTTATTTACTGATGTTATGGGGAAGAACAATTCTGGCAAGTCTTGCCATGATCAAGAGAATTTTGTATCTGTAAACTCTGGTGCCAAAAACTTTATTACTATTGGAGGCACTTCTGACAATGCGGAGGTTCTGCTGGATGTTACTGAAATCTGCTCTACTGCTGCTCTAACTGAAGCTATAACCTCCAGTCTTCCTTCATTTGATGAATGCCTTCACAATACAAATCCATTACCCATTTCTGATGCAGTGGTCAGACTAGAAGTGGCTGAAACTGTCAATTCAGTTGATGGTCCACAGCGACCCCTTCTTTTGAATCTGACATCTCTAGAACAGAATCCTAATGGTGCTGCAGTAAGTGTTCCTGACAGTGAGGCTCCAGTGGGATTGCATGAGACCATCAGTACAGGTCATGATTTGTGTAATGTTGCGTCCGAGATCCCACCTTCATGTGAGGAACAAGCTCATGTAATCAGTCCAGTGACTATGCAAGATAAAGAGGCCAAAACGGGAGTGCATGTCATGTTAGATGATGACCTAGAGAATCTTGTTGCAATGGATTTACCTTCATCTGAAGAACAGATCTCCAAAAGTGCCACAGAAAAGGAGAACAGTCAAGTGCATGAGACTATCAGTTCAAGTCATGATTTGCATATTGTTGTATCCGTGATCCCACCTTCATCTGAAGGACGAAATCTTATGATGAGCATAGCAACTGTGCAAGATAAAGAGGCTGAAGCTGGAGTGCTTGATAAAGAGTCCAATGACTATGCAAGTTTGGGTGAGGACCAAGGGAATCTTGTCAATGTGCATTCATCTTCATCTGAAGAAAAAATCGCTGAAAGCACCCCAGGGAAACTGAATGGTGAAGCACAGATTTTGGCTTCTGATAGTGCAACTCAGGTCAATCAGCAGAACTTAGTTGATTCTGCAGTCAATGGAAACTCTAATCAGGAAGTGCCCCTGGACAGTTCACCCTCGGTACAGCCTCTGATAGCCTTGGTTCTTGGTGGTTCACTGACAGCACATCAGGCAGACCAAGACCATGGTACTGATATGTTAGCCACATCAAGTGCAGCACAAGATGGAGATGCACAAGCTTGCGTAAATCAGAATACTTGTCAACCTGTGGACTCCCATTTCCACGATGGAATTGAATTTCAGCCAAGTAGTGAAGACTCTGACTTTAATCAAGTTACCCATGTTGCAATGCAATTTAATGCGAACCTCCCTGCTTTTTCAGAACAAACTGGTTTGCAACCTCTGACAAGTTTTTCCTTGAATCAGCCATCTTATGTACCTACTAATGGCTTTGGTCTACCTTTCTCAGACACAAGATCTACATTTGTTACATCTAATTTGCCTCTTCCTTTCAACTGTGATTTGCTTCAAAAGGAATTGGAAAGATTGGGAAGAGAAAGAGAAGAAAACCTCAAGTCTCATGAAAATAAACTGCAATTGAAATCTGATATGGAGAAGGGGATAGAGGAATTGAAAGCTGAAATTTGTCAAGAGTATGAGACTGAACTCCAACAGATAGAGGCAGAATTTTTCCTTAAAAAGGAAGATTTGCTTGCAGTTCACAGAAAAGTATTAATCCATACGATGTTGGCTCGGGCATGGGATCTGGCTTTCAAGTCCATTGGCAAGGATAATACAGGTTCAAGTTCATCTGGAGTGCATCATGATGGGAATTTTGCTGTTGACCGCCAATTGGTTCAGTCATGTATGCAGCAAAATGCACAAATGCCTTCTCTAGTTTCCAATTCATCTTTGGCCAACCCTCCTGCAGCTTGCGGACAGACAACCCCACTTGCACTGGCAACCAGTCCACGCTATGCAGCTCCACTGATACAGAATGTTGATCTTTTGCCTACTCCTTCTCCTGGCCTTTCTTCGACCAATGCAGCAAGTCACCCCCACATCGGTTCCTTCTCCTCTTCAACAGGAAGACCCCAAAGTAGAGTTGATATTCGTTCGCCTCTCCCACATCTTCAACCTCGTAGACCTTCAACACCCTTTACTGGAGGTACCAGTCCTTTCTCTCATGAAGATGGGTCATCAAATCAGCAGTCACATAGAAGCTCACCTTCATCGTCTCTCCTGGAACTTTTTCTCACACAAACCCCGGCACCCACACAGATGTCTGTTCCATATAATATGGGACATGATCATGAAACTGCAGGGGAACCTTCAATATCCGTTACTGGTACTAGTCCTGTCTATCCACAATGTGAAGTTATATCAAATCAGCAGCCACATAGGAATTTCCCTCCATCACTTTCATCTCATAGGCAACGACCTTTGGCCTTCACACAACAATTTGATCTTTTGCCTACTCCTCCTCCTGGCCTTTCTTCGACCAATGCAGCAAGTCACCCCCACTTCGGTTCCTTCTCCTCTTCGACAGGAAGACCCCAAGGTAGAGTTGAGATTAGTTCGCCTCTCCCACATCTTCAACCTCGTAGACCTTCAACACCCTTGACTGGAGGTACCAGTCCTTTCTCTCATAAAGATGGGTCATTGAATCAGCAGTCACATAGAAGCTCACCTTCGTCGTCTCTCCTGGAACTTTTTCTCACACAACCCCCCGCGCCCACACAGATGTCTGTTCCCTATAATATAGAACATGATCATGAAACTGCAGGGGAACATTCAATATCCGTTACTGGTATCGGTCTTGTCTATCCACAATGTGAAGTTATATCAAATCAGCAGCCACATAGGAATTCCCCTCCATCTCCCTTACTTTCATCTCATACTCAACGACCTTTGGCCTCCACACGACAATTTGATCTTTTGCCTACTCCTTCTCCTGGCCTTTCTTCGACCAATGCAGCAAGTCACCCCCACAACATCGGTTCCTTCTCCTCTTCAACAGGAAGACCCCAAGGTAGAGTTGAGATTCGTGCCCCTCCCCCACATCTTCAACCTCGTAGACTTTCAACACCTTTTACTGGAGGTACCAGTCCTTTCTCTCATGAAGATGGGTCATCAAATCAGCAGTCACATAGAAACTCACTTTCGTCATCTCTCCTGGAACTTTTTCTCACAGAGCCCCCAGCGCCCACACGGATGTCTGTTCCCTATAATATGGAACATGATCATGAAACTGCAGAGGAACCTTCAATATCCGTTAGTGGTACCAGTCCTGTCTATCAACAATGGAGGGTTATATCAAATCAGCAGCCAGATAGGAATTCCCCTCCAGCTCCTCCATTACTTTCTCCTCATACCCAACGACCCTTGGTCCCCACACAACAACTTGTTCCTGATAATATAGTCCATCACTGTGAAAGTGCCGGAGGATTGCCAGCTCTTCGTAGTGCATCTGCATTGGAGTTGCTTATCGACATGAGCAATCAATCTTCAGGTAGTTGGCGCTCAACACAGAATAGTTCAAGACTTGAACCATCTGGTGGATCGACAGATGTAGTTTGTTTATCAGATGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006342 GO:0006344 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

1619

Amino Acids

177.02

Weight (kDa)

5.51

Isoelectric Point (pI)

58.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOM1	PF25029	122 - 238	1.1e-43	MOM1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08060 AT1G08060 AT1G08060
fragaria_vesca	FvH4_3g31740 FvH4_3g31740 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540
malus_domestica	MD03G1121600.v1.1 MD11G1139900.v1.1 MD11G1140000.v1.1
prunus_persica	Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104700_v2.0.a1
pyrus_communis	pycom11g11560 pycom11g11580
rosa_chinensis	RchiOBHm_Chr4g0405411 RchiOBHm_Chr5g0058411
rosa_laevigata	RLG00000008844 RLG00000035218
rosa_multiflora	Rmu_sc0000367.1_g000115 Rmu_sc0000575.1_g000013
rosa_roxburghii	Rroxscaffold_1G00022120 Rroxscaffold_1G00022140 Rroxscaffold_5G00349880
rosa_rugosa	Rorug04G0059700 Rorug04G0059800 Rorug04G0059900 Rorug04G0060000 Rorug05G0313800 Rorug05G0313800 Rorug05G0313900 Rorug05G0314000 Rorug05G0314100
rosa_samantha	Rh4AG131700 Rh4BG126600 Rh4CG139100 Rh4DG125700 Rh5AG381300 Rh5BG392800 Rh5CG416900 Rh5DG408000
rosa_wichuraiana	Rw4G010660 Rw5G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	550
AatII	GACGTC	1 cut(s)	68
Acc65I	GGTACC	4 cut(s)	3431, 3893, 4364, 4544
AccB1I	GGYRCC	6 cut(s)	1484, 3431, 3532, 3893, 4364, 4544
AccB7I	CCANNNNNTGG	2 cut(s)	23, 4820
AccI	GTMKAC	4 cut(s)	2719, 3406, 3868, 4339
AccII	CGCG	1 cut(s)	3995
AciI	CCGC	4 cut(s)	1526, 3109, 3198, 3993
AclWI	GGATC	4 cut(s)	1834, 2065, 3033, 4831
AcoI	YGGCCR	2 cut(s)	6, 3177
AcuI	CTGAAG	8 cut(s)	267, 581, 1596, 1995, 2106, 2157, 2247, 4755
AcyI	GRCGYC	1 cut(s)	65
AdeI	CACNNNGTG	2 cut(s)	3635, 4097
AflIII	ACRYGT	2 cut(s)	327, 645
AhdI	GACNNNNNGTC	1 cut(s)	4649
AhlI	ACTAGT	1 cut(s)	3614
AleI	CACNNNNGTG	1 cut(s)	172
AlwI	GGATC	4 cut(s)	1834, 2065, 3033, 4831
AlwNI	CAGNNNCTG	4 cut(s)	23, 440, 667, 2392
Ama87I	CYCGRG	1 cut(s)	3015
ArsI	GACNNNNNNTTYG	4 cut(s)	3458, 3490, 4391, 4423
AseI	ATTAAT	1 cut(s)	2996
Asp700I	GAANNNNTTC	6 cut(s)	462, 881, 1614, 3513, 3975, 4446
Asp718I	GGTACC	4 cut(s)	3431, 3893, 4364, 4544
AspLEI	GCGC	5 cut(s)	841, 1367, 3997, 4468, 4785
AspS9I	GGNCC	7 cut(s)	20, 376, 742, 1356, 1694, 2188, 4651
AsuC2I	CCSGG	2 cut(s)	1264, 3530
AsuHPI	GGTGA	9 cut(s)	170, 2195, 2279, 2367, 3308, 3480, 3770, 3942, 4238
AsuII	TTCGAA	1 cut(s)	1006
AvaI	CYCGRG	1 cut(s)	3015
AvaII	GGWCC	7 cut(s)	20, 376, 742, 1356, 1694, 2188, 4651
BaeGI	GKGCMC	2 cut(s)	2364, 4315
BalI	TGGCCA	1 cut(s)	3179
BanI	GGYRCC	6 cut(s)	1484, 3431, 3532, 3893, 4364, 4544
BanII	GRGCYC	2 cut(s)	1204, 4461
BauI	CACGAG	1 cut(s)	1203
BbsI	GAAGAC	7 cut(s)	348, 1092, 1586, 2583, 3358, 3820, 4291
BciVI	GTATCC	1 cut(s)	2074
BclI	TGATCA	4 cut(s)	1453, 3571, 4033, 4504
BcnI	CCSGG	2 cut(s)	1264, 3530
BcuI	ACTAGT	1 cut(s)	3614
BfaI	CTAG	6 cut(s)	1661, 1730, 1940, 3158, 3615, 4858
BfoI	RGCGCY	3 cut(s)	1368, 4469, 4786
BfuI	GTATCC	1 cut(s)	2074
BglII	AGATCT	4 cut(s)	110, 137, 1983, 2738
Bme18I	GGWCC	7 cut(s)	20, 376, 742, 1356, 1694, 2188, 4651
BmeRI	GACNNNNNGTC	1 cut(s)	4649
BmeT110I	CYCGRG	1 cut(s)	3015
BmgT120I	GGNCC	7 cut(s)	20, 376, 742, 1356, 1694, 2188, 4651
BmsI	GCATC	8 cut(s)	427, 616, 742, 1225, 1636, 2482, 3091, 4739
BpiI	GAAGAC	7 cut(s)	348, 1092, 1586, 2583, 3358, 3820, 4291
BpmI	CTGGAG	9 cut(s)	1332, 1573, 1764, 2163, 3096, 3447, 3909, 4380, 4593
Bpu14I	TTCGAA	1 cut(s)	1006
BpuEI	CTTGAG	3 cut(s)	380, 1109, 2819
BpuMI	CCSGG	2 cut(s)	1264, 3530
BsaAI	YACGTR	1 cut(s)	646
BsaHI	GRCGYC	1 cut(s)	65
BsaI	GGTCTC	3 cut(s)	36, 140, 1790
Bse3DI	GCAATG	4 cut(s)	554, 660, 1962, 2616
BseGI	GGATG	5 cut(s)	96, 382, 853, 1546, 4482
BseMI	GCAATG	4 cut(s)	554, 660, 1962, 2616
BseMII	CTCAG	8 cut(s)	98, 135, 380, 447, 1233, 1386, 2315, 2742
BseRI	GAGGAG	7 cut(s)	3328, 3732, 3735, 3790, 4261, 4605, 4620
BseSI	GKGCMC	2 cut(s)	2364, 4315
BseYI	CCCAGC	1 cut(s)	4462
BsgI	GTGCAG	2 cut(s)	1233, 2496
Bsh1236I	CGCG	1 cut(s)	3995
BshNI	GGYRCC	6 cut(s)	1484, 3431, 3532, 3893, 4364, 4544
BsiHKCI	CYCGRG	1 cut(s)	3015
BsiSI	CCGG	4 cut(s)	9, 1263, 3530, 4704
BslFI	GGGAC	3 cut(s)	1314, 3579, 4637
BsmBI	CGTCTC	2 cut(s)	3504, 3966
BsmFI	GGGAC	3 cut(s)	1314, 3579, 4637
BsmI	GAATGC	2 cut(s)	1616, 2212
Bso31I	GGTCTC	3 cut(s)	36, 140, 1790
BsoBI	CYCGRG	1 cut(s)	3015
Bsp119I	TTCGAA	1 cut(s)	1006
Bsp1286I	GDGCHC	4 cut(s)	1204, 2364, 4315, 4461
Bsp19I	CCATGG	1 cut(s)	2446
BspACI	CCGC	4 cut(s)	1526, 3109, 3198, 3993
BspCNI	CTCAG	8 cut(s)	99, 136, 379, 446, 1234, 1387, 2314, 2741
BspFNI	CGCG	1 cut(s)	3995
BspHI	TCATGA	9 cut(s)	1813, 2044, 2842, 3085, 3448, 3574, 4036, 4381, 4507
BspMAI	CTGCAG	9 cut(s)	550, 663, 697, 1756, 2335, 3193, 3586, 4048, 4519
BspPI	GGATC	4 cut(s)	1834, 2065, 3033, 4831
BspQI	GCTCTTC	1 cut(s)	4725
BspT104I	TTCGAA	1 cut(s)	1006
BspT107I	GGYRCC	6 cut(s)	1484, 3431, 3532, 3893, 4364, 4544
BspTNI	GGTCTC	3 cut(s)	36, 140, 1790
BsrDI	GCAATG	4 cut(s)	554, 660, 1962, 2616
BssNI	GRCGYC	1 cut(s)	65
BssSI	CACGAG	1 cut(s)	1203
BssT1I	CCWWGG	7 cut(s)	230, 2191, 2400, 2446, 3820, 4291, 4647
Bst2BI	CACGAG	1 cut(s)	1203
Bst4CI	ACNGT	7 cut(s)	1678, 1772, 2015, 2119, 2372, 2780, 4694
Bst6I	CTCTTC	7 cut(s)	951, 2772, 2809, 3346, 3808, 4279, 4725
BstACI	GRCGYC	1 cut(s)	65
BstAPI	GCANNNNNTGC	1 cut(s)	1446
BstBAI	YACGTR	1 cut(s)	646
BstBI	TTCGAA	1 cut(s)	1006
BstC8I	GCNNGC	7 cut(s)	519, 1150, 1321, 2503, 2976, 3196, 4716
BstDSI	CCRYGG	1 cut(s)	2446
BstEII	GGTNACC	1 cut(s)	158
BstENI	CCTNNNNNAGG	1 cut(s)	2960
BstF5I	GGATG	5 cut(s)	96, 382, 853, 1546, 4482
BstFNI	CGCG	1 cut(s)	3995
BstH2I	RGCGCY	3 cut(s)	1368, 4469, 4786
BstHHI	GCGC	5 cut(s)	841, 1367, 3997, 4468, 4785
BstMWI	GCNNNNNNNGC	4 cut(s)	1373, 1446, 2432, 4465
BstNSI	RCATGY	3 cut(s)	331, 1323, 1922
BstPI	GGTNACC	1 cut(s)	158
BstSLI	GKGCMC	2 cut(s)	2364, 4315
BstUI	CGCG	1 cut(s)	3995
BstV2I	GAAGAC	7 cut(s)	348, 1092, 1586, 2583, 3358, 3820, 4291
BstX2I	RGATCY	6 cut(s)	110, 137, 1839, 1983, 2738, 3025
BstXI	CCANNNNNNTGG	3 cut(s)	174, 231, 2447
BstYI	RGATCY	6 cut(s)	110, 137, 1839, 1983, 2738, 3025
BsuI	GTATCC	1 cut(s)	2074
BtgI	CCRYGG	1 cut(s)	2446
BtsCI	GGATG	5 cut(s)	96, 382, 853, 1546, 4482
BtsI	GCAGTG	2 cut(s)	668, 1656
BtsIMutI	CAGTG	9 cut(s)	668, 1656, 1777, 1788, 1887, 2417, 3218, 3248, 4690
Cac8I	GCNNGC	7 cut(s)	519, 1150, 1321, 2503, 2976, 3196, 4716
CaiI	CAGNNNCTG	4 cut(s)	23, 440, 667, 2392
CciI	TCATGA	9 cut(s)	1813, 2044, 2842, 3085, 3448, 3574, 4036, 4381, 4507
CfoI	GCGC	5 cut(s)	841, 1367, 3997, 4468, 4785
Cfr13I	GGNCC	7 cut(s)	20, 376, 742, 1356, 1694, 2188, 4651
CseI	GACGC	3 cut(s)	540, 1100, 1821
CsiI	ACCWGGT	1 cut(s)	22
DraIII	CACNNNGTG	2 cut(s)	3635, 4097
DrdI	GACNNNNNNGTC	1 cut(s)	550
DriI	GACNNNNNGTC	1 cut(s)	4649
DseDI	GACNNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	2 cut(s)	6, 3177
Eam1104I	CTCTTC	7 cut(s)	951, 2772, 2809, 3346, 3808, 4279, 4725
Eam1105I	GACNNNNNGTC	1 cut(s)	4649
EarI	CTCTTC	7 cut(s)	951, 2772, 2809, 3346, 3808, 4279, 4725
Eco130I	CCWWGG	7 cut(s)	230, 2191, 2400, 2446, 3820, 4291, 4647
Eco24I	GRGCYC	2 cut(s)	1204, 4461
Eco31I	GGTCTC	3 cut(s)	36, 140, 1790
Eco32I	GATATC	1 cut(s)	531
Eco47I	GGWCC	7 cut(s)	20, 376, 742, 1356, 1694, 2188, 4651
Eco57I	CTGAAG	8 cut(s)	267, 581, 1596, 1995, 2106, 2157, 2247, 4755
Eco88I	CYCGRG	1 cut(s)	3015
Eco91I	GGTNACC	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	2960
EcoO109I	RGGNCCY	2 cut(s)	20, 376
EcoO65I	GGTNACC	1 cut(s)	158
EcoRI	GAATTC	2 cut(s)	4129, 4600
EcoRV	GATATC	1 cut(s)	531
EcoT14I	CCWWGG	7 cut(s)	230, 2191, 2400, 2446, 3820, 4291, 4647
EcoT38I	GRGCYC	2 cut(s)	1204, 4461
ErhI	CCWWGG	7 cut(s)	230, 2191, 2400, 2446, 3820, 4291, 4647
Esp3I	CGTCTC	2 cut(s)	3504, 3966
FaqI	GGGAC	3 cut(s)	1314, 3579, 4637
FauI	CCCGC	1 cut(s)	4000
FbaI	TGATCA	4 cut(s)	1453, 3571, 4033, 4504
FblI	GTMKAC	4 cut(s)	2719, 3406, 3868, 4339
FokI	GGATG	5 cut(s)	83, 369, 860, 1553, 4489
FriOI	GRGCYC	2 cut(s)	1204, 4461
FspBI	CTAG	6 cut(s)	1661, 1730, 1940, 3158, 3615, 4858
GlaI	GCGC	5 cut(s)	840, 1366, 3996, 4467, 4784
GsaI	CCCAGC	1 cut(s)	4466
GsuI	CTGGAG	9 cut(s)	1332, 1573, 1764, 2163, 3096, 3447, 3909, 4380, 4593
HaeII	RGCGCY	3 cut(s)	1368, 4469, 4786
HapII	CCGG	4 cut(s)	9, 1263, 3530, 4704
HgaI	GACGC	3 cut(s)	540, 1100, 1821
HhaI	GCGC	5 cut(s)	841, 1367, 3997, 4468, 4785
Hin1I	GRCGYC	1 cut(s)	65
Hin6I	GCGC	5 cut(s)	839, 1365, 3995, 4466, 4783
HinP1I	GCGC	5 cut(s)	839, 1365, 3995, 4466, 4783
HincII	GTYRAC	2 cut(s)	2525, 3106
HindII	GTYRAC	2 cut(s)	2525, 3106
HindIII	AAGCTT	1 cut(s)	2499
HpaII	CCGG	4 cut(s)	9, 1263, 3530, 4704
HphI	GGTGA	9 cut(s)	170, 2195, 2279, 2367, 3308, 3480, 3770, 3942, 4238
Hpy99I	CGWCG	3 cut(s)	64, 67, 3961
HpyCH4III	ACNGT	7 cut(s)	1678, 1772, 2015, 2119, 2372, 2780, 4694
HpyCH4IV	ACGT	2 cut(s)	65, 645
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1373, 1446, 2432, 4465
HpySE526I	ACGT	2 cut(s)	65, 645
Hsp92I	GRCGYC	1 cut(s)	65
HspAI	GCGC	5 cut(s)	839, 1365, 3995, 4466, 4783
KpnI	GGTACC	4 cut(s)	3435, 3897, 4368, 4548
Ksp22I	TGATCA	4 cut(s)	1453, 3571, 4033, 4504
LguI	GCTCTTC	1 cut(s)	4725
LmnI	GCTCC	3 cut(s)	1783, 3250, 4618
LweI	GCATC	8 cut(s)	427, 616, 742, 1225, 1636, 2482, 3091, 4739
MabI	ACCWGGT	1 cut(s)	22
MaeI	CTAG	6 cut(s)	1661, 1730, 1940, 3158, 3615, 4858
MaeII	ACGT	2 cut(s)	65, 645
MfeI	CAATTG	4 cut(s)	619, 917, 2858, 3113
MflI	RGATCY	6 cut(s)	110, 137, 1839, 1983, 2738, 3025
MhlI	GDGCHC	4 cut(s)	1204, 2364, 4315, 4461
MlsI	TGGCCA	1 cut(s)	3179
MluNI	TGGCCA	1 cut(s)	3179
MlyI	GAGTC	7 cut(s)	49, 707, 1001, 1253, 2168, 2528, 2573
MmeI	TCCRAC	3 cut(s)	83, 521, 2956
Mox20I	TGGCCA	1 cut(s)	3179
MroXI	GAANNNNTTC	6 cut(s)	462, 881, 1614, 3513, 3975, 4446
MscI	TGGCCA	1 cut(s)	3179
Msp20I	TGGCCA	1 cut(s)	3179
MspA1I	CMGCKG	2 cut(s)	1138, 1292
MspI	CCGG	4 cut(s)	9, 1263, 3530, 4704
MunI	CAATTG	4 cut(s)	619, 917, 2858, 3113
Mva1269I	GAATGC	2 cut(s)	1616, 2212
MvnI	CGCG	1 cut(s)	3995
MwoI	GCNNNNNNNGC	4 cut(s)	1373, 1446, 2432, 4465
NciI	CCSGG	2 cut(s)	1264, 3530
NcoI	CCATGG	1 cut(s)	2446
NspI	RCATGY	3 cut(s)	331, 1323, 1922
NspV	TTCGAA	1 cut(s)	1006
OliI	CACNNNNGTG	1 cut(s)	172
PaeI	GCATGC	1 cut(s)	1323
PagI	TCATGA	9 cut(s)	1813, 2044, 2842, 3085, 3448, 3574, 4036, 4381, 4507
PasI	CCCWGGG	1 cut(s)	2252
PciI	ACATGT	1 cut(s)	327
PciSI	GCTCTTC	1 cut(s)	4725
PctI	GAATGC	2 cut(s)	1616, 2212
PdmI	GAANNNNTTC	6 cut(s)	462, 881, 1614, 3513, 3975, 4446
PflFI	GACNNNGTC	1 cut(s)	64
PflMI	CCANNNNNTGG	2 cut(s)	23, 4820
PfoI	TCCNGGA	3 cut(s)	3504, 3966, 4437
PleI	GAGTC	7 cut(s)	49, 706, 1000, 1252, 2167, 2528, 2573
PpsI	GAGTC	7 cut(s)	49, 706, 1000, 1252, 2167, 2528, 2573
Ppu21I	YACGTR	1 cut(s)	646
PpuMI	RGGWCCY	2 cut(s)	20, 376
PscI	ACATGT	1 cut(s)	327
PshBI	ATTAAT	1 cut(s)	2996
Psp5II	RGGWCCY	2 cut(s)	20, 376
PspEI	GGTNACC	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	4462
PspPI	GGNCC	7 cut(s)	20, 376, 742, 1356, 1694, 2188, 4651
PspPPI	RGGWCCY	2 cut(s)	20, 376
PstI	CTGCAG	9 cut(s)	550, 663, 697, 1756, 2335, 3193, 3586, 4048, 4519
PstNI	CAGNNNCTG	4 cut(s)	23, 440, 667, 2392
PsuI	RGATCY	6 cut(s)	110, 137, 1839, 1983, 2738, 3025
PsyI	GACNNNGTC	1 cut(s)	64
PvuII	CAGCTG	2 cut(s)	1138, 1292
SapI	GCTCTTC	1 cut(s)	4725
Sau96I	GGNCC	7 cut(s)	20, 376, 742, 1356, 1694, 2188, 4651
SchI	GAGTC	7 cut(s)	49, 707, 1001, 1253, 2168, 2528, 2573
SduI	GDGCHC	4 cut(s)	1204, 2364, 4315, 4461
SexAI	ACCWGGT	1 cut(s)	22
SfaNI	GCATC	8 cut(s)	427, 616, 742, 1225, 1636, 2482, 3091, 4739
SfuI	TTCGAA	1 cut(s)	1006
SinI	GGWCC	7 cut(s)	20, 376, 742, 1356, 1694, 2188, 4651
SmlI	CTYRAG	3 cut(s)	359, 1124, 2834
SmoI	CTYRAG	3 cut(s)	359, 1124, 2834
SpeI	ACTAGT	1 cut(s)	3614
SphI	GCATGC	1 cut(s)	1323
SsiI	CCGC	4 cut(s)	1526, 3109, 3198, 3993
SspMI	CTAG	6 cut(s)	1661, 1730, 1940, 3158, 3615, 4858
StyI	CCWWGG	7 cut(s)	230, 2191, 2400, 2446, 3820, 4291, 4647
TaaI	ACNGT	7 cut(s)	1678, 1772, 2015, 2119, 2372, 2780, 4694
TaiI	ACGT	2 cut(s)	68, 648
TaqI	TCGA	8 cut(s)	265, 1006, 3299, 3761, 3806, 4229, 4752, 4826
TaqII	GACCGA	1 cut(s)	4067
TatI	WGTACW	3 cut(s)	475, 674, 1805
TscAI	CASTG	9 cut(s)	668, 1656, 1777, 1788, 1887, 2424, 3225, 3255, 4697
TspGWI	ACGGA	5 cut(s)	2056, 3592, 4054, 4489, 4525
TspRI	CASTG	9 cut(s)	668, 1656, 1777, 1788, 1887, 2424, 3225, 3255, 4697
Tth111I	GACNNNGTC	1 cut(s)	64
Van91I	CCANNNNNTGG	2 cut(s)	23, 4820
VpaK11BI	GGWCC	7 cut(s)	20, 376, 742, 1356, 1694, 2188, 4651
VspI	ATTAAT	1 cut(s)	2996
XagI	CCTNNNNNAGG	1 cut(s)	2960
XbaI	TCTAGA	1 cut(s)	1729
XceI	RCATGY	3 cut(s)	331, 1323, 1922
XcmI	CCANNNNNNNNNTGG	3 cut(s)	76, 2546, 3172
XmiI	GTMKAC	4 cut(s)	2719, 3406, 3868, 4339
XmnI	GAANNNNTTC	6 cut(s)	462, 881, 1614, 3513, 3975, 4446
XspI	CTAG	6 cut(s)	1661, 1730, 1940, 3158, 3615, 4858
ZraI	GACGTC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.