Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001784

Physical Location & Seq

Genomic Coordinates Reverse (-)

4854224 .. 4855287

Gene Structure 1064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTCTTCTGAGAATGATTTCGTTGAGTTTTCTTCTATGTTCGAGAGAATTATACAAGGAAGAGGTGATGGTCTCTCTCGATTTTTGCCGGTGATTGTAGCTTTAGCCGCCAGAGAAGACGATGATGACCAAGGATCTACCGATCAAACAACGAGACGGGGAGATCCGTTGAGTCCAAGGTTCGTGATGATCGGATCGCGATCGGGACTCGACGATTTCTTTAGCGACGGTGGAAAACAAGGGAGGTCGCCGGCGTTGAAGTCAGAAGTGGAGAATATGCCACGTGTCGTGATCGGAGAAGATAAGGAGAAATATGGTGGTTCTTGCGCGATTTGTTTGGATGAGTGGTCTAAAGGTGACGTGGCGGCGGAGATGCCTTGTAAACATAAGTTTCACTCAAAGTGTGTGGAGGAGTGGTTAGGGAGGCACGCCACGTGTCCTATGTGTAGGTATGAGATGCCTGTTGAAGAAGTTGAAGAAGAGAAGAAGATTGGGATTTGGATTGGTTTCTCCATTAACGCCGGCGACAGAAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

179

Amino Acids

20.03

Weight (kDa)

4.93

Isoelectric Point (pI)

55.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-ANAPC11	PF12861	104 - 156	9.7e-07	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1	PF12678	105 - 150	1.3e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	108 - 150	4.1e-15	Ring finger domain
zf-C3HC4_2	PF13923	109 - 149	1.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	109 - 136	6e-09	RING-like zinc finger
zf-C3HC4	PF00097	109 - 149	4.8e-09	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14200
fragaria_vesca	FvH4_6g48331 FvH4_6g48340 FvH4_6g48360
malus_domestica	MD00G1131000.v1.1 MD09G1052200.v1.1 MD17G1031000.v1.1
prunus_persica	Prupe.3G288800_v2.0.a1
pyrus_communis	pycom111g04350 pycom17g02840 pycom17g04730
rosa_chinensis	RchiOBHm_Chr2g0168291 RchiOBHm_Chr2g0168301 RchiOBHm_Chr4g0388111
rosa_laevigata	RLG00000010079 RLG00000021486 RLG00000021487 RLG00000021762
rosa_multiflora	Rmu_sc0002180.1_g000027 Rmu_sc0002509.1_g000007 Rmu_sc0003354.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083170 Rroxscaffold_2G00083190 Rroxscaffold_2G00083200 Rroxscaffold_2G00083210 Rroxscaffold_3G00258810 Rroxscaffold_5G00334660
rosa_rugosa	Rorug02G0532500 Rorug03G0314900 Rorug07G0036900.1
rosa_samantha	Rh2AG601500 Rh2AG601600 Rh2AG601800 Rh2BG614800 Rh2BG615000 Rh2CG582300 Rh2CG582400 Rh2CG582600 Rh2DG625000 Rh2DG625200 Rh4AG020700 Rh4BG015000 Rh4CG021300 Rh4DG015700 Rh7BG163500
rosa_wichuraiana	Rw2G049940 Rw4G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	199, 329
AciI	CCGC	3 cut(s)	108, 365, 368
AclWI	GGATC	3 cut(s)	142, 158, 202
AcvI	CACGTG	2 cut(s)	284, 435
AflIII	ACRYGT	2 cut(s)	283, 434
AgsI	TTSAA	3 cut(s)	259, 467, 476
AjiI	CACGTC	1 cut(s)	361
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw26I	GTCTC	2 cut(s)	77, 148
AlwI	GGATC	3 cut(s)	142, 158, 202
Asp700I	GAANNNNTTC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	329
AsuHPI	GGTGA	3 cut(s)	77, 103, 368
BbrPI	CACGTG	2 cut(s)	284, 435
BbsI	GAAGAC	1 cut(s)	123
BccI	CCATC	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	77, 148
BisI	GCNGC	2 cut(s)	108, 366
BlsI	GCNGC	2 cut(s)	109, 367
BmgBI	CACGTC	1 cut(s)	361
BmsI	GCATC	2 cut(s)	363, 447
BpiI	GAAGAC	1 cut(s)	123
BsaAI	YACGTR	2 cut(s)	284, 435
BsaBI	GATNNNNATC	1 cut(s)	199
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	130, 176
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bse118I	RCCGGY	3 cut(s)	88, 250, 521
Bse8I	GATNNNNATC	1 cut(s)	199
BseDI	CCNNGG	2 cut(s)	130, 176
BseGI	GGATG	1 cut(s)	346
BseJI	GATNNNNATC	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	425
Bsh1236I	CGCG	2 cut(s)	199, 329
Bsh1285I	CGRYCG	1 cut(s)	203
BsiEI	CGRYCG	1 cut(s)	203
BsiSI	CCGG	3 cut(s)	89, 251, 522
BslFI	GGGAC	1 cut(s)	219
BsmAI	GTCTC	2 cut(s)	77, 148
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	219
Bso31I	GGTCTC	1 cut(s)	77
Bsp143I	GATC	7 cut(s)	134, 142, 163, 189, 194, 200, 291
Bsp68I	TCGCGA	1 cut(s)	199
BspACI	CCGC	3 cut(s)	108, 365, 368
BspFNI	CGCG	2 cut(s)	199, 329
BspPI	GGATC	3 cut(s)	142, 158, 202
BspTNI	GGTCTC	1 cut(s)	77
BsrFI	RCCGGY	3 cut(s)	88, 250, 521
BssAI	RCCGGY	3 cut(s)	88, 250, 521
BssECI	CCNNGG	2 cut(s)	130, 176
BssMI	GATC	7 cut(s)	134, 142, 163, 189, 194, 200, 291
BssT1I	CCWWGG	2 cut(s)	130, 176
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	2 cut(s)	55, 474
BstBAI	YACGTR	2 cut(s)	284, 435
BstC8I	GCNNGC	3 cut(s)	252, 429, 523
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	346
BstFNI	CGCG	2 cut(s)	199, 329
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	7 cut(s)	137, 145, 166, 192, 197, 203, 294
BstMAI	GTCTC	2 cut(s)	77, 148
BstMBI	GATC	7 cut(s)	134, 142, 163, 189, 194, 200, 291
BstMCI	CGRYCG	1 cut(s)	203
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstUI	CGCG	2 cut(s)	199, 329
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	2 cut(s)	134, 163
BstYI	RGATCY	2 cut(s)	134, 163
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	346
BtuMI	TCGCGA	1 cut(s)	199
Cac8I	GCNNGC	3 cut(s)	252, 429, 523
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	3 cut(s)	88, 250, 521
CspCI	CAANNNNNGTGG	2 cut(s)	387, 422
CviJI	RGCY	2 cut(s)	101, 107
CviKI_1	RGCY	2 cut(s)	101, 107
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	7 cut(s)	136, 144, 165, 191, 196, 202, 293
DpnII	GATC	7 cut(s)	134, 142, 163, 189, 194, 200, 291
Eam1104I	CTCTTC	2 cut(s)	55, 474
EarI	CTCTTC	2 cut(s)	55, 474
EciI	GGCGGA	1 cut(s)	383
Eco130I	CCWWGG	2 cut(s)	130, 176
Eco31I	GGTCTC	1 cut(s)	77
Eco72I	CACGTG	2 cut(s)	284, 435
EcoT14I	CCWWGG	2 cut(s)	130, 176
ErhI	CCWWGG	2 cut(s)	130, 176
Esp3I	CGTCTC	1 cut(s)	148
FaiI	YATR	7 cut(s)	38, 53, 278, 315, 387, 443, 453
FaqI	GGGAC	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	108, 366
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	2 cut(s)	108, 366
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	2 cut(s)	108, 366
HapII	CCGG	3 cut(s)	89, 251, 522
HhaI	GCGC	1 cut(s)	329
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HinfI	GANTC	2 cut(s)	172, 207
HpaII	CCGG	3 cut(s)	89, 251, 522
HphI	GGTGA	3 cut(s)	77, 103, 368
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	4 cut(s)	10, 194, 265, 296
Hpy188III	TCNNGA	6 cut(s)	43, 78, 184, 198, 204, 289
Hpy8I	GTNNAC	1 cut(s)	383
Hpy99I	CGWCG	2 cut(s)	215, 230
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	3 cut(s)	283, 360, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	3 cut(s)	283, 360, 434
HspAI	GCGC	1 cut(s)	327
KroI	GCCGGC	2 cut(s)	250, 521
KroNI	GCCGGC	2 cut(s)	252, 523
Kzo9I	GATC	7 cut(s)	134, 142, 163, 189, 194, 200, 291
LpnPI	CCDG	5 cut(s)	102, 124, 264, 474, 535
LweI	GCATC	2 cut(s)	363, 447
MaeII	ACGT	3 cut(s)	283, 360, 434
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	7 cut(s)	136, 144, 165, 191, 196, 202, 293
MboI	GATC	7 cut(s)	134, 142, 163, 189, 194, 200, 291
MboII	GAAGA	9 cut(s)	24, 72, 128, 311, 479, 488, 491, 496, 499
MflI	RGATCY	2 cut(s)	134, 163
MluCI	AATT	1 cut(s)	48
MlyI	GAGTC	2 cut(s)	181, 201
MnlI	CCTC	4 cut(s)	56, 237, 403, 417
MreI	CGCCGGCG	2 cut(s)	250, 521
MroNI	GCCGGC	2 cut(s)	250, 521
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	1 cut(s)	516
MspI	CCGG	3 cut(s)	89, 251, 522
MvnI	CGCG	2 cut(s)	199, 329
MwoI	GCNNNNNNNGC	1 cut(s)	107
NaeI	GCCGGC	2 cut(s)	252, 523
NdeII	GATC	7 cut(s)	134, 142, 163, 189, 194, 200, 291
NgoMIV	GCCGGC	2 cut(s)	250, 521
NmuCI	GTSAC	1 cut(s)	356
NruI	TCGCGA	1 cut(s)	199
PdiI	GCCGGC	2 cut(s)	252, 523
PdmI	GAANNNNTTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	109, 367
Ple19I	CGATCG	1 cut(s)	203
PleI	GAGTC	2 cut(s)	180, 201
PmaCI	CACGTG	2 cut(s)	284, 435
PmlI	CACGTG	2 cut(s)	284, 435
PpsI	GAGTC	2 cut(s)	180, 201
Ppu21I	YACGTR	2 cut(s)	284, 435
PspCI	CACGTG	2 cut(s)	284, 435
PsuI	RGATCY	2 cut(s)	134, 163
PvuI	CGATCG	1 cut(s)	203
RruI	TCGCGA	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	2 cut(s)	108, 366
Sau3AI	GATC	7 cut(s)	134, 142, 163, 189, 194, 200, 291
SchI	GAGTC	2 cut(s)	181, 201
SetI	ASST	9 cut(s)	67, 103, 182, 248, 286, 358, 363, 437, 452
SfaNI	GCATC	2 cut(s)	363, 447
SgrAI	CRCCGGYG	2 cut(s)	250, 521
Sse9I	AATT	1 cut(s)	48
SsiI	CCGC	3 cut(s)	108, 365, 368
StyI	CCWWGG	2 cut(s)	130, 176
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	3 cut(s)	286, 363, 437
TaqI	TCGA	3 cut(s)	42, 79, 210
TasI	AATT	1 cut(s)	48
TauI	GCSGC	2 cut(s)	110, 368
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TseFI	GTSAC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	356
TspGWI	ACGGA	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.