Rh2DG625000

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001784
Physical Location & Seq
Reverse (-)
85471924 .. 85472355
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG625000.1

Sequence Viewer

Length: 405 bp
ATGATAGGGGAAACTCCCGTACTCGCCTTACCTACACCAGCCATTGACGTCAGTGCATCAAGGCAACAATTACTTGCTTTAATTGATTTTGTATTCGCTGATCAGCCTACCGTGGTGGTGGGAGCATCAAAGGCATCCATAGAAGACATGCCGAGGGTGATAGTCACCGACGAAGGAATGGAGTGCAGTATATGTTTGGAAAGCTTCAAAGTCTGCGGTGAAGCCAAGGAGATGCCTTGTAAGCACAGGTTTCACTCGCACTGTATTGAAAACTGGCTGTACAGGCGTGCTTCCTGCCCACTTTGCAGGTTCACCGTGCCCGTTGACTTGGAAGAAGAGACGAATGGCATGAGCGAACATTGGATTGATATCACGGATTTTTTGGATTTTAGGGATATGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

134

Amino Acids

15.11

Weight (kDa)

4.58

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 61 - 103 9.7e-13 Ring finger domain
zf-RING_11 PF17123 61 - 89 5.7e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 61 - 102 7e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 62 - 102 1.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 62 - 100 3.1e-06 RING-type zinc-finger
zf-rbx1 PF12678 78 - 103 8.7e-08 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 297
AciI CCGC 1 cut(s) 216
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 21, 281
AgsI TTSAA 2 cut(s) 208, 269
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 332
AsuHPI GGTGA 4 cut(s) 157, 169, 230, 304
BaeGI GKGCMC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 150
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 332
BfuAI ACCTGC 1 cut(s) 297
BmsI GCATC 4 cut(s) 65, 134, 143, 222
BpiI GAAGAC 1 cut(s) 150
BsaBI GATNNNNATC 1 cut(s) 368
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 3 cut(s) 111, 152, 225
Bse1I ACTGG 1 cut(s) 278
Bse8I GATNNNNATC 1 cut(s) 368
BseDI CCNNGG 3 cut(s) 111, 152, 225
BseGI GGATG 1 cut(s) 134
BseJI GATNNNNATC 1 cut(s) 368
BseNI ACTGG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 321
BsgI GTGCAG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 332
BsmBI CGTCTC 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 321
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 297
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 3 cut(s) 111, 152, 225
BssMI GATC 1 cut(s) 100
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 225
Bst4CI ACNGT 3 cut(s) 112, 263, 316
Bst6I CTCTTC 1 cut(s) 330
BstACI GRCGYC 1 cut(s) 48
BstAUI TGTACA 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 134
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 4 cut(s) 131, 241, 283, 303
BstNSI RCATGY 1 cut(s) 151
BstSLI GKGCMC 1 cut(s) 321
BstV2I GAAGAC 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 1 cut(s) 134
BtsIMutI CAGTG 2 cut(s) 58, 259
BveI ACCTGC 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 288
Csp6I GTAC 2 cut(s) 20, 280
CviAII CATG 2 cut(s) 148, 349
CviJI RGCY 5 cut(s) 41, 106, 204, 224, 277
CviKI_1 RGCY 5 cut(s) 41, 106, 204, 224, 277
CviQI GTAC 2 cut(s) 20, 280
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 225
Eco32I GATATC 1 cut(s) 370
EcoRV GATATC 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 332
FaeI CATG 2 cut(s) 151, 352
FaiI YATR 6 cut(s) 140, 149, 191, 193, 350, 398
FatI CATG 2 cut(s) 147, 348
FbaI TGATCA 1 cut(s) 100
FokI GGATG 1 cut(s) 121
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 2 cut(s) 151, 352
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 202
HphI GGTGA 4 cut(s) 157, 169, 230, 304
Hpy166II GTNNAC 2 cut(s) 312, 325
Hpy8I GTNNAC 2 cut(s) 312, 325
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 3 cut(s) 112, 263, 316
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 3 cut(s) 56, 186, 306
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 241, 283, 303
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 2 cut(s) 151, 352
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 6 cut(s) 51, 232, 259, 268, 292, 307
LweI GCATC 4 cut(s) 65, 134, 143, 222
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 163
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 3 cut(s) 155, 344, 347
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 2 cut(s) 68, 81
MnlI CCTC 1 cut(s) 147
MseI TTAA 1 cut(s) 80
MwoI GCNNNNNNNGC 4 cut(s) 131, 241, 283, 303
NdeII GATC 1 cut(s) 100
NlaIII CATG 2 cut(s) 151, 352
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 163
NspI RCATGY 1 cut(s) 151
RsaI GTAC 2 cut(s) 21, 281
RsaNI GTAC 2 cut(s) 20, 280
SaqAI TTAA 1 cut(s) 80
Sau3AI GATC 1 cut(s) 100
SduI GDGCHC 1 cut(s) 321
SetI ASST 5 cut(s) 34, 51, 206, 251, 311
SfaNI GCATC 4 cut(s) 65, 134, 143, 222
Sse9I AATT 2 cut(s) 68, 81
SsiI CCGC 1 cut(s) 216
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 3 cut(s) 112, 263, 316
TaiI ACGT 1 cut(s) 51
TasI AATT 2 cut(s) 68, 81
TatI WGTACW 1 cut(s) 279
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 2 cut(s) 58, 266
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 2 cut(s) 58, 266
XceI RCATGY 1 cut(s) 151
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.