Rh4DG015700

RING-type zinc-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001784
Physical Location & Seq
Reverse (-)
2401724 .. 2402305
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG015700.1

Sequence Viewer

Length: 582 bp
ATGTCTAATTCCGAAGCAAACGACGATGGTCAGTTGTCCCTATCGGAATCATTAGTCTCTTTCTCCGACCAACGCGTGCCATTGCACAGTTTTACTATCAGAGGGCCAATATTTACTGGAGGGCTACCTGGCGACATCAATCGGACATCTGTGTCGCGGCCGAGGGCATCCAAGGCCTCCATAGAGGCCATGCCAACTGTGACAGTGGCATCTGAGGAAGGTAATGAATGCATTATCTGCTTGGATGGCTTGAAGGTCGGCGACGAAGCCAAGGAAATGCCTTGCAAGCACAGGTTCCACGGGGCCTGTATCAAAAAGTGGATGGGGATGAGCACTCTCTGCCCGCTTTGCAGGTTCTCTTTGCCGGCAGAGTCAGAAGAGGAAGAAAATAGTGATGATGGTGACGATTATGTTAACCTTTTTAGGTCTATTCTTGATGTTGTTAACGATGGCAGTGATACTGAAGATGACTCTGAAGGTGAGGAAGATATCGGAGGTGAATGGGAATCAAACACTGTCGATGATGATGTTGCTTCAGTCGGAGATAATGTCACCTTCAGGTTTAGTTTTAGTATTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

193

Amino Acids

21.01

Weight (kDa)

4.19

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 75 - 118 9.5e-15 Ring finger domain
zf-RING_11 PF17123 76 - 104 4.3e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 76 - 117 2.4e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 77 - 117 3.6e-08 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 94 - 118 1.7e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 151
Acc36I ACCTGC 1 cut(s) 342
AccII CGCG 2 cut(s) 75, 157
AciI CCGC 2 cut(s) 157, 344
AcoI YGGCCR 1 cut(s) 158
AcuI CTGAAG 4 cut(s) 483, 495, 519, 541
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 2 cut(s) 253, 578
AjnI CCWGG 1 cut(s) 127
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 1 cut(s) 61
AoxI GGCC 5 cut(s) 104, 158, 174, 186, 303
AspS9I GGNCC 2 cut(s) 104, 303
AsuHPI GGTGA 4 cut(s) 413, 491, 509, 544
Bbv12I GWGCWC 1 cut(s) 335
BccI CCATC 5 cut(s) 20, 239, 316, 392, 443
BciT130I CCWGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 61
BfuAI ACCTGC 1 cut(s) 342
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 104, 303
BmiI GGNNCC 2 cut(s) 296, 304
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 2 cut(s) 176, 218
BoxI GACNNNNGTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 138
BsaJI CCNNGG 4 cut(s) 161, 171, 270, 298
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 80
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 4 cut(s) 161, 171, 270, 298
BseGI GGATG 4 cut(s) 167, 250, 327, 333
BseMI GCAATG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 121
BseX3I CGGCCG 1 cut(s) 158
Bsh1236I CGCG 2 cut(s) 75, 157
Bsh1285I CGRYCG 1 cut(s) 161
BshFI GGCC 5 cut(s) 106, 160, 176, 188, 305
BsiEI CGRYCG 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 335
BsiSI CCGG 1 cut(s) 365
BslFI GGGAC 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 5 cut(s) 106, 160, 176, 188, 305
Bsp1286I GDGCHC 1 cut(s) 335
BspACI CCGC 2 cut(s) 157, 344
BspANI GGCC 5 cut(s) 106, 160, 176, 188, 305
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 2 cut(s) 75, 157
BspLI GGNNCC 2 cut(s) 296, 304
BspMI ACCTGC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 4 cut(s) 161, 171, 270, 298
BssT1I CCWWGG 2 cut(s) 171, 270
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 4 cut(s) 89, 199, 205, 517
Bst6I CTCTTC 1 cut(s) 372
BstAPI GCANNNNNTGC 2 cut(s) 237, 339
BstC8I GCNNGC 4 cut(s) 77, 287, 344, 366
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 1 cut(s) 298
BstF5I GGATG 4 cut(s) 167, 250, 327, 333
BstFNI CGCG 2 cut(s) 75, 157
BstMAI GTCTC 1 cut(s) 61
BstMCI CGRYCG 1 cut(s) 161
BstMWI GCNNNNNNNGC 6 cut(s) 173, 237, 246, 286, 339, 348
BstNI CCWGG 1 cut(s) 129
BstPAI GACNNNNGTC 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 127
BstUI CGCG 2 cut(s) 75, 157
BstZI CGGCCG 1 cut(s) 158
BsuRI GGCC 5 cut(s) 106, 160, 176, 188, 305
BtgI CCRYGG 1 cut(s) 298
BtsCI GGATG 4 cut(s) 167, 250, 327, 333
BtsI GCAGTG 1 cut(s) 460
BtsIMutI CAGTG 3 cut(s) 210, 460, 513
BveI ACCTGC 1 cut(s) 342
Cac8I GCNNGC 4 cut(s) 77, 287, 344, 366
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 2 cut(s) 104, 303
CviAII CATG 1 cut(s) 190
CviJI RGCY 8 cut(s) 106, 124, 160, 176, 188, 249, 269, 305
CviKI_1 RGCY 8 cut(s) 106, 124, 160, 176, 188, 249, 269, 305
DdeI CTNAG 1 cut(s) 213
DrdI GACNNNNNNGTC 1 cut(s) 151
DseDI GACNNNNNNGTC 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 158
EagI CGGCCG 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
EclXI CGGCCG 1 cut(s) 158
Eco130I CCWWGG 2 cut(s) 171, 270
Eco147I AGGCCT 1 cut(s) 176
Eco32I GATATC 1 cut(s) 490
Eco52I CGGCCG 1 cut(s) 158
Eco57I CTGAAG 4 cut(s) 483, 495, 519, 541
EcoO109I RGGNCCY 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 127
EcoRV GATATC 1 cut(s) 490
EcoT14I CCWWGG 2 cut(s) 171, 270
EcoT22I ATGCAT 1 cut(s) 233
ErhI CCWWGG 2 cut(s) 171, 270
FaeI CATG 1 cut(s) 193
FaiI YATR 3 cut(s) 182, 191, 411
FaqI GGGAC 1 cut(s) 22
FatI CATG 1 cut(s) 189
FauI CCCGC 1 cut(s) 351
Fnu4HI GCNGC 1 cut(s) 158
FokI GGATG 4 cut(s) 154, 257, 334, 340
Fsp4HI GCNGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 5 cut(s) 106, 160, 176, 188, 305
HapII CCGG 1 cut(s) 365
Hin1II CATG 1 cut(s) 193
HincII GTYRAC 2 cut(s) 415, 445
HindII GTYRAC 2 cut(s) 415, 445
HinfI GANTC 4 cut(s) 47, 371, 470, 506
HpaI GTTAAC 2 cut(s) 415, 445
HpaII CCGG 1 cut(s) 365
HphI GGTGA 4 cut(s) 413, 491, 509, 544
Hpy166II GTNNAC 2 cut(s) 415, 445
Hpy188III TCNNGA 1 cut(s) 434
Hpy8I GTNNAC 2 cut(s) 415, 445
Hpy99I CGWCG 2 cut(s) 26, 266
HpyAV CCTTC 4 cut(s) 212, 247, 470, 565
HpyCH4III ACNGT 4 cut(s) 89, 199, 205, 517
HpyCH4V TGCA 4 cut(s) 85, 231, 285, 351
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 237, 246, 286, 339, 348
HpyF3I CTNAG 1 cut(s) 213
Hsp92II CATG 1 cut(s) 193
KroI GCCGGC 1 cut(s) 364
KroNI GCCGGC 1 cut(s) 366
KspAI GTTAAC 2 cut(s) 415, 445
LpnPI CCDG 8 cut(s) 102, 114, 141, 277, 319, 337, 378, 544
LweI GCATC 2 cut(s) 176, 218
MaeIII GTNAC 3 cut(s) 199, 401, 550
MboII GAAGA 4 cut(s) 389, 395, 476, 497
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 1 cut(s) 7
MluI ACGCGT 1 cut(s) 73
MlyI GAGTC 2 cut(s) 380, 464
MmeI TCCRAC 2 cut(s) 90, 520
MnlI CCTC 9 cut(s) 95, 113, 156, 178, 187, 208, 373, 475, 488
Mph1103I ATGCAT 1 cut(s) 233
MroNI GCCGGC 1 cut(s) 364
MseI TTAA 2 cut(s) 414, 444
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 1 cut(s) 129
MvnI CGCG 2 cut(s) 75, 157
MwoI GCNNNNNNNGC 6 cut(s) 173, 237, 246, 286, 339, 348
NaeI GCCGGC 1 cut(s) 366
NgoMIV GCCGGC 1 cut(s) 364
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 2 cut(s) 296, 304
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 3 cut(s) 199, 401, 550
NsiI ATGCAT 1 cut(s) 233
PceI AGGCCT 1 cut(s) 176
PctI GAATGC 1 cut(s) 233
PdiI GCCGGC 1 cut(s) 366
PfeI GAWTC 2 cut(s) 47, 506
PkrI GCNGC 1 cut(s) 159
PleI GAGTC 2 cut(s) 379, 464
PpsI GAGTC 2 cut(s) 379, 464
PshAI GACNNNNGTC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 296, 304
PspPI GGNCC 2 cut(s) 104, 303
SaqAI TTAA 2 cut(s) 414, 444
SatI GCNGC 1 cut(s) 158
Sau96I GGNCC 2 cut(s) 104, 303
SchI GAGTC 2 cut(s) 380, 464
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 335
SfaNI GCATC 2 cut(s) 176, 218
Sse9I AATT 1 cut(s) 7
SseBI AGGCCT 1 cut(s) 176
SsiI CCGC 2 cut(s) 157, 344
SspI AATATT 1 cut(s) 111
StuI AGGCCT 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 2 cut(s) 171, 270
TaaI ACNGT 4 cut(s) 89, 199, 205, 517
TaqI TCGA 1 cut(s) 519
TasI AATT 1 cut(s) 7
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 2 cut(s) 47, 506
Tru1I TTAA 2 cut(s) 414, 444
Tru9I TTAA 2 cut(s) 414, 444
TscAI CASTG 3 cut(s) 210, 460, 520
TseFI GTSAC 3 cut(s) 199, 401, 550
Tsp45I GTSAC 3 cut(s) 199, 401, 550
TspDTI ATGAA 1 cut(s) 240
TspRI CASTG 3 cut(s) 210, 460, 520
Zsp2I ATGCAT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.