Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001784

Physical Location & Seq

Genomic Coordinates Reverse (-)

25983255 .. 25984621

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G288800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTCTTCAGAAGCTTCGGAAAACGCCGAAATGTCCCGTATCCGTAGAATTGCGGAATGGATGGAGTCAGATACAGAGTCTGATGATCTCCATGGCTTGCATAGTCGTCTCATAATTCGTTTGCAGATGGAGGTAGGACGACACTACATACGGCGCCGTCTACTAGCAGACGACAACTTCAATATCAATACAAGTATTAATAATTTCAATAATATTGGTAATAATGGGCCGTTGGCGGCGGCGGCATCCAAGGCCTCCATAGACGCCATGCCAAGAGTGACCGTGACGAGCCCAGGCGCCGAGTGCAGTATCTGCTTGGAAGGCTTGGAGGTCGGCGCTGAAGCCAGAGAGATGCCCTGCAAACACAGGTTTCACTCGCTTTGTATCGAATTGTGGCTCGGCAGGCGAGGCTCCTGTCCGCTTTGCAGGTTCTCTATGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

148

Amino Acids

16.45

Weight (kDa)

6.2

Isoelectric Point (pI)

68.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14200
fragaria_vesca	FvH4_6g48331 FvH4_6g48340 FvH4_6g48360
malus_domestica	MD00G1131000.v1.1 MD09G1052200.v1.1 MD17G1031000.v1.1
prunus_persica	Prupe.3G288800_v2.0.a1
pyrus_communis	pycom111g04350 pycom17g02840 pycom17g04730
rosa_chinensis	RchiOBHm_Chr2g0168291 RchiOBHm_Chr2g0168301 RchiOBHm_Chr4g0388111
rosa_laevigata	RLG00000010079 RLG00000021486 RLG00000021487 RLG00000021762
rosa_multiflora	Rmu_sc0002180.1_g000027 Rmu_sc0002509.1_g000007 Rmu_sc0003354.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083170 Rroxscaffold_2G00083190 Rroxscaffold_2G00083200 Rroxscaffold_2G00083210 Rroxscaffold_3G00258810 Rroxscaffold_5G00334660
rosa_rugosa	Rorug02G0532500 Rorug03G0314900 Rorug07G0036900.1
rosa_samantha	Rh2AG601500 Rh2AG601600 Rh2AG601800 Rh2BG614800 Rh2BG615000 Rh2CG582300 Rh2CG582400 Rh2CG582600 Rh2DG625000 Rh2DG625200 Rh4AG020700 Rh4BG015000 Rh4CG021300 Rh4DG015700 Rh7BG163500
rosa_wichuraiana	Rw2G049940 Rw4G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	417
AccB1I	GGYRCC	2 cut(s)	153, 296
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	5 cut(s)	53, 236, 239, 242, 419
AcuI	CTGAAG	1 cut(s)	360
AcyI	GRCGYC	3 cut(s)	154, 264, 297
AgsI	TTSAA	2 cut(s)	181, 208
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	113
AlwNI	CAGNNNCTG	2 cut(s)	80, 312
AoxI	GGCC	2 cut(s)	227, 252
AseI	ATTAAT	1 cut(s)	198
AspLEI	GCGC	3 cut(s)	156, 299, 338
AspS9I	GGNCC	1 cut(s)	227
BanI	GGYRCC	2 cut(s)	153, 296
BanII	GRGCYC	1 cut(s)	293
BccI	CCATC	2 cut(s)	55, 121
BceAI	ACGGC	3 cut(s)	141, 167, 214
BciT130I	CCWGG	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	2 cut(s)	164, 442
BfoI	RGCGCY	3 cut(s)	157, 300, 339
BfuAI	ACCTGC	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	50
BisI	GCNGC	3 cut(s)	237, 240, 243
BlsI	GCNGC	3 cut(s)	238, 241, 244
Bme1390I	CCNGG	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	3 cut(s)	155, 298, 412
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	2 cut(s)	254, 342
BsaHI	GRCGYC	3 cut(s)	154, 264, 297
BsaJI	CCNNGG	3 cut(s)	91, 249, 292
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	3 cut(s)	91, 249, 292
BseGI	GGATG	2 cut(s)	66, 245
BsgI	GTGCAG	1 cut(s)	325
BshFI	GGCC	2 cut(s)	229, 254
BshNI	GGYRCC	2 cut(s)	153, 296
BslFI	GGGAC	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	113
BsmBI	CGTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	229, 254
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	1 cut(s)	85
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	5 cut(s)	53, 236, 239, 242, 419
BspANI	GGCC	2 cut(s)	229, 254
BspLI	GGNNCC	3 cut(s)	155, 298, 412
BspMI	ACCTGC	1 cut(s)	417
BspT107I	GGYRCC	2 cut(s)	153, 296
BssECI	CCNNGG	3 cut(s)	91, 249, 292
BssMI	GATC	1 cut(s)	85
BssNI	GRCGYC	3 cut(s)	154, 264, 297
BssT1I	CCWWGG	2 cut(s)	91, 249
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	283
BstACI	GRCGYC	3 cut(s)	154, 264, 297
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	98, 404
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	66, 245
BstH2I	RGCGCY	3 cut(s)	157, 300, 339
BstHHI	GCGC	3 cut(s)	156, 299, 338
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	7 cut(s)	242, 251, 303, 312, 321, 403, 408
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	50
BsuRI	GGCC	2 cut(s)	229, 254
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	66, 245
BveI	ACCTGC	1 cut(s)	417
Cac8I	GCNNGC	2 cut(s)	98, 404
CaiI	CAGNNNCTG	2 cut(s)	80, 312
CfoI	GCGC	3 cut(s)	156, 299, 338
Cfr13I	GGNCC	1 cut(s)	227
CseI	GACGC	1 cut(s)	272
CviAII	CATG	2 cut(s)	92, 268
CviJI	RGCY	9 cut(s)	14, 96, 229, 254, 291, 324, 344, 397, 411
CviKI_1	RGCY	9 cut(s)	14, 96, 229, 254, 291, 324, 344, 397, 411
DinI	GGCGCC	2 cut(s)	155, 298
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eco130I	CCWWGG	2 cut(s)	91, 249
Eco147I	AGGCCT	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	2 cut(s)	91, 249
EcoT38I	GRGCYC	1 cut(s)	293
EgeI	GGCGCC	2 cut(s)	155, 298
EheI	GGCGCC	2 cut(s)	155, 298
ErhI	CCWWGG	2 cut(s)	91, 249
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	2 cut(s)	95, 271
FaiI	YATR	7 cut(s)	93, 102, 113, 149, 260, 269, 437
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	2 cut(s)	91, 267
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	237, 240, 243
FokI	GGATG	2 cut(s)	73, 232
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	3 cut(s)	237, 240, 243
FspBI	CTAG	2 cut(s)	164, 442
GlaI	GCGC	3 cut(s)	155, 298, 337
GluI	GCNGC	3 cut(s)	237, 240, 243
HaeII	RGCGCY	3 cut(s)	157, 300, 339
HaeIII	GGCC	2 cut(s)	229, 254
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	3 cut(s)	156, 299, 338
Hin1I	GRCGYC	3 cut(s)	154, 264, 297
Hin1II	CATG	2 cut(s)	95, 271
Hin6I	GCGC	3 cut(s)	154, 297, 336
HinP1I	GCGC	3 cut(s)	154, 297, 336
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	2 cut(s)	65, 77
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	4 cut(s)	10, 19, 70, 82
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	5 cut(s)	100, 124, 306, 360, 426
HpyF10VI	GCNNNNNNNGC	7 cut(s)	242, 251, 303, 312, 321, 403, 408
Hsp92I	GRCGYC	3 cut(s)	154, 264, 297
Hsp92II	CATG	2 cut(s)	95, 271
HspAI	GCGC	3 cut(s)	154, 297, 336
KasI	GGCGCC	2 cut(s)	153, 296
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	416
LpnPI	CCDG	8 cut(s)	279, 306, 352, 358, 370, 388, 412, 427
LweI	GCATC	2 cut(s)	254, 342
MaeI	CTAG	2 cut(s)	164, 442
MaeIII	GTNAC	2 cut(s)	277, 283
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	4 cut(s)	48, 114, 202, 389
Mly113I	GGCGCC	2 cut(s)	154, 297
MlyI	GAGTC	2 cut(s)	74, 86
MnlI	CCTC	4 cut(s)	124, 265, 322, 401
MseI	TTAA	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	7 cut(s)	242, 251, 303, 312, 321, 403, 408
NarI	GGCGCC	2 cut(s)	154, 297
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	2 cut(s)	95, 271
NlaIV	GGNNCC	3 cut(s)	155, 298, 412
NmeAIII	GCCGAG	2 cut(s)	325, 378
NmuCI	GTSAC	2 cut(s)	277, 283
PceI	AGGCCT	1 cut(s)	254
PkrI	GCNGC	3 cut(s)	238, 241, 244
PleI	GAGTC	2 cut(s)	73, 85
PluTI	GGCGCC	2 cut(s)	157, 300
PpsI	GAGTC	2 cut(s)	73, 85
PshBI	ATTAAT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	3 cut(s)	155, 298, 412
PspPI	GGNCC	1 cut(s)	227
PstNI	CAGNNNCTG	2 cut(s)	80, 312
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	3 cut(s)	237, 240, 243
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	2 cut(s)	74, 86
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	5 cut(s)	16, 135, 333, 371, 431
SfaNI	GCATC	2 cut(s)	254, 342
SfoI	GGCGCC	2 cut(s)	155, 298
Sse9I	AATT	4 cut(s)	48, 114, 202, 389
SseBI	AGGCCT	1 cut(s)	254
SsiI	CCGC	5 cut(s)	53, 236, 239, 242, 419
SspDI	GGCGCC	2 cut(s)	153, 296
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	2 cut(s)	164, 442
StuI	AGGCCT	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	2 cut(s)	91, 249
TaaI	ACNGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	387
TasI	AATT	4 cut(s)	48, 114, 202, 389
TauI	GCSGC	3 cut(s)	239, 242, 245
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseFI	GTSAC	2 cut(s)	277, 283
Tsp45I	GTSAC	2 cut(s)	277, 283
TspGWI	ACGGA	1 cut(s)	32
VspI	ATTAAT	1 cut(s)	198
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	2 cut(s)	164, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.