Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001784

Physical Location & Seq

Genomic Coordinates Forward (+)

5881876 .. 5882419

Gene Structure 544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTCTAGTTCCGAAGCAAACGACGATGACCACATGTCCCTATGGGAACTATTAAGCTCTTCCTCTGACCAAGGCGTGCCATTGCACAGATTTACTATCAGAGGGCGAATTTTACTGGAGGGCTACCTGAAGTCATCAATCGGACTCCTGTGTCGGCGACAAAGCCAAGGAAATGCCTTGCAAGCACAGGTTCCACAGGGCCCGTTTCAAAAAGTGGATGGCGATGAGCACTCTCAGCCCGCAGAGTCAGAAGAGGAAGAAAAAAGTAGTGATGATGATGATGATGATATTAGGTCTATTCTTAATGGTGCTAACTATGAAATTGAAGATATCATATCGGAGGTGAATGGGATACAAGCACTGTCTATGATGATCGATGACGATTCAGTCGGAGATAATTTCACCTTCACCTTCATGTTTAGTTTTAATATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.15

Weight (kDa)

4.07

Isoelectric Point (pI)

67.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14200
fragaria_vesca	FvH4_6g48331 FvH4_6g48340 FvH4_6g48360
malus_domestica	MD00G1131000.v1.1 MD09G1052200.v1.1 MD17G1031000.v1.1
prunus_persica	Prupe.3G288800_v2.0.a1
pyrus_communis	pycom111g04350 pycom17g02840 pycom17g04730
rosa_chinensis	RchiOBHm_Chr2g0168291 RchiOBHm_Chr2g0168301 RchiOBHm_Chr4g0388111
rosa_laevigata	RLG00000010079 RLG00000021486 RLG00000021487 RLG00000021762
rosa_multiflora	Rmu_sc0002180.1_g000027 Rmu_sc0002509.1_g000007 Rmu_sc0003354.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083170 Rroxscaffold_2G00083190 Rroxscaffold_2G00083200 Rroxscaffold_2G00083210 Rroxscaffold_3G00258810 Rroxscaffold_5G00334660
rosa_rugosa	Rorug02G0532500 Rorug03G0314900 Rorug07G0036900.1
rosa_samantha	Rh2AG601500 Rh2AG601600 Rh2AG601800 Rh2BG614800 Rh2BG615000 Rh2CG582300 Rh2CG582400 Rh2CG582600 Rh2DG625000 Rh2DG625200 Rh4AG020700 Rh4BG015000 Rh4CG021300 Rh4DG015700 Rh7BG163500
rosa_wichuraiana	Rw2G049940 Rw4G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	150, 386
AciI	CCGC	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	2 cut(s)	209, 326
AhdI	GACNNNNNGTC	1 cut(s)	34
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
Alw21I	GWGCWC	1 cut(s)	231
AoxI	GGCC	1 cut(s)	199
ApaI	GGGCCC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	108
AspS9I	GGNCC	2 cut(s)	199, 200
AsuHPI	GGTGA	3 cut(s)	355, 394, 400
BaeGI	GKGCMC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	231
BccI	CCATC	1 cut(s)	212
BciVI	GTATCC	1 cut(s)	345
BfaI	CTAG	1 cut(s)	6
BfuI	GTATCC	1 cut(s)	345
BmeRI	GACNNNNNGTC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	199, 200
BmiI	GGNNCC	2 cut(s)	192, 201
BpmI	CTGGAG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	70, 166
Bse1I	ACTGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	80
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	70, 166
BseGI	GGATG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	203
BshFI	GGCC	1 cut(s)	201
BshVI	ATCGAT	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	201
Bsp120I	GGGCCC	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	203, 231
Bsp143I	GATC	1 cut(s)	372
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	247
BspDI	ATCGAT	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	192, 201
BspQI	GCTCTTC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	70, 166
BssMI	GATC	1 cut(s)	372
BssT1I	CCWWGG	2 cut(s)	70, 166
Bst4CI	ACNGT	1 cut(s)	363
Bst6I	CTCTTC	2 cut(s)	64, 246
BstC8I	GCNNGC	3 cut(s)	77, 183, 240
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	1 cut(s)	375
BstMBI	GATC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 235
BstNSI	RCATGY	1 cut(s)	37
BstSLI	GKGCMC	1 cut(s)	203
Bsu15I	ATCGAT	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	201
BsuTUI	ATCGAT	1 cut(s)	375
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	359
Cac8I	GCNNGC	3 cut(s)	77, 183, 240
Cfr13I	GGNCC	2 cut(s)	199, 200
ClaI	ATCGAT	1 cut(s)	375
CviAII	CATG	2 cut(s)	34, 415
CviJI	RGCY	5 cut(s)	57, 123, 165, 201, 238
CviKI_1	RGCY	5 cut(s)	57, 123, 165, 201, 238
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
DrdI	GACNNNNNNGTC	2 cut(s)	150, 386
DriI	GACNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	2 cut(s)	150, 386
Eam1104I	CTCTTC	2 cut(s)	64, 246
Eam1105I	GACNNNNNGTC	1 cut(s)	34
EarI	CTCTTC	2 cut(s)	64, 246
Eco130I	CCWWGG	2 cut(s)	70, 166
Eco24I	GRGCYC	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	331
EcoT14I	CCWWGG	2 cut(s)	70, 166
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	2 cut(s)	70, 166
FaeI	CATG	2 cut(s)	37, 418
FaiI	YATR	6 cut(s)	35, 43, 318, 335, 368, 416
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	2 cut(s)	33, 414
FauI	CCCGC	1 cut(s)	247
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	203
FspBI	CTAG	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	37, 418
HinfI	GANTC	3 cut(s)	144, 245, 383
HphI	GGTGA	3 cut(s)	355, 394, 400
Hpy188I	TCNGA	7 cut(s)	13, 67, 101, 143, 250, 340, 392
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	415, 421
HpyCH4III	ACNGT	1 cut(s)	363
HpyCH4V	TGCA	2 cut(s)	85, 181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 235
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	37, 418
Kzo9I	GATC	1 cut(s)	372
LguI	GCTCTTC	1 cut(s)	64
LpnPI	CCDG	5 cut(s)	101, 140, 161, 173, 182
MaeI	CTAG	1 cut(s)	6
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MboII	GAAGA	4 cut(s)	51, 263, 269, 338
MhlI	GDGCHC	2 cut(s)	203, 231
MluCI	AATT	3 cut(s)	108, 321, 397
MlyI	GAGTC	2 cut(s)	138, 254
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	5 cut(s)	73, 95, 112, 247, 334
MseI	TTAA	4 cut(s)	53, 303, 426, 436
MslI	CAYNNNNRTG	1 cut(s)	413
MwoI	GCNNNNNNNGC	2 cut(s)	182, 235
NdeII	GATC	1 cut(s)	372
NlaIII	CATG	2 cut(s)	37, 418
NlaIV	GGNNCC	2 cut(s)	192, 201
NspI	RCATGY	1 cut(s)	37
PciI	ACATGT	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	383
PleI	GAGTC	2 cut(s)	138, 253
PpsI	GAGTC	2 cut(s)	138, 253
PscI	ACATGT	1 cut(s)	33
PspN4I	GGNNCC	2 cut(s)	192, 201
PspOMI	GGGCCC	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	199, 200
RseI	CAYNNNNRTG	1 cut(s)	413
SapI	GCTCTTC	1 cut(s)	64
SaqAI	TTAA	4 cut(s)	53, 303, 426, 436
Sau3AI	GATC	1 cut(s)	372
Sau96I	GGNCC	2 cut(s)	199, 200
SchI	GAGTC	2 cut(s)	138, 254
SduI	GDGCHC	2 cut(s)	203, 231
SetI	ASST	7 cut(s)	59, 129, 192, 296, 345, 407, 413
SmiMI	CAYNNNNRTG	1 cut(s)	413
Sse9I	AATT	3 cut(s)	108, 321, 397
SsiI	CCGC	1 cut(s)	240
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	1 cut(s)	6
StyI	CCWWGG	2 cut(s)	70, 166
TaaI	ACNGT	1 cut(s)	363
TaqI	TCGA	1 cut(s)	375
TasI	AATT	3 cut(s)	108, 321, 397
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	4 cut(s)	53, 303, 426, 436
Tru9I	TTAA	4 cut(s)	53, 303, 426, 436
TscAI	CASTG	1 cut(s)	366
TspDTI	ATGAA	2 cut(s)	333, 403
TspRI	CASTG	1 cut(s)	366
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	1 cut(s)	37
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.