Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002180.1

Orthogroup ID

OG0001784

Physical Location & Seq

Genomic Coordinates Forward (+)

95337 .. 97404

Gene Structure 2068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002180.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgtctaattccgaagcaaacgacgatggtcaattgtccctatcggaatcattagtctctttctccgaccaacgcgtgccaatattgcacagttttactatcagagggccaatatttactggagggctacctggtgtcatcaatcggacatcctctgtgtcgcggccgagggcatccaaggtctccatagaggccatgccaactgtgacagtggcatctgaggaaggtaatgaatgcagtatctgcttggatggcttgaaggtcggcgacgaagccaaggaaatgccttgcaagcacaggttccacggggcctgtatcaaaaagtggatggggatgagcactctctgcccgctttgcaggttctctttgccggcagagtcagaagaggaagaaaatagtgatgatggtggcgattattttggcctttttaggtctattcttgatgttgttaacaatggcagtgatactgaagatgactctgaaagtgaggaagatatcggaggtgaatgggaatcaagcactgtcgatgatgatgacgcttcagtcggagataatgtcaccttcagggacgtccacgatatcgagaggaagcttcagccatcgtggggtagaaaggaagctgtggccatctgtatgtcgtcggcggggatggtggtgacggcggctgggattacctcggagatgagggggttggagagggaaacgtcgtcattttgggagatgggggtatggtggcgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

246

Amino Acids

26.89

Weight (kDa)

4.42

Isoelectric Point (pI)

54.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14200
fragaria_vesca	FvH4_6g48331 FvH4_6g48340 FvH4_6g48360
malus_domestica	MD00G1131000.v1.1 MD09G1052200.v1.1 MD17G1031000.v1.1
prunus_persica	Prupe.3G288800_v2.0.a1
pyrus_communis	pycom111g04350 pycom17g02840 pycom17g04730
rosa_chinensis	RchiOBHm_Chr2g0168291 RchiOBHm_Chr2g0168301 RchiOBHm_Chr4g0388111
rosa_laevigata	RLG00000010079 RLG00000021486 RLG00000021487 RLG00000021762
rosa_multiflora	Rmu_sc0002180.1_g000027 Rmu_sc0002509.1_g000007 Rmu_sc0003354.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083170 Rroxscaffold_2G00083190 Rroxscaffold_2G00083200 Rroxscaffold_2G00083210 Rroxscaffold_3G00258810 Rroxscaffold_5G00334660
rosa_rugosa	Rorug02G0532500 Rorug03G0314900 Rorug07G0036900.1
rosa_samantha	Rh2AG601500 Rh2AG601600 Rh2AG601800 Rh2BG614800 Rh2BG615000 Rh2CG582300 Rh2CG582400 Rh2CG582600 Rh2DG625000 Rh2DG625200 Rh4AG020700 Rh4BG015000 Rh4CG021300 Rh4DG015700 Rh7BG163500
rosa_wichuraiana	Rw2G049940 Rw4G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	542
AatII	GACGTC	1 cut(s)	573
Acc36I	ACCTGC	1 cut(s)	348
AccII	CGCG	2 cut(s)	75, 163
AciI	CCGC	4 cut(s)	163, 350, 644, 662
AcoI	YGGCCR	2 cut(s)	164, 624
AcuI	CTGAAG	4 cut(s)	489, 525, 547, 578
AcyI	GRCGYC	1 cut(s)	570
AfiI	CCNNNNNNNGG	1 cut(s)	605
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	2 cut(s)	592, 620
AluI	AGCT	2 cut(s)	592, 620
Alw21I	GWGCWC	1 cut(s)	341
Alw26I	GTCTC	2 cut(s)	61, 187
AlwNI	CAGNNNCTG	1 cut(s)	243
AoxI	GGCC	6 cut(s)	107, 164, 192, 309, 421, 624
AspS9I	GGNCC	2 cut(s)	107, 309
AsuHPI	GGTGA	3 cut(s)	515, 550, 667
BalI	TGGCCA	1 cut(s)	626
Bbv12I	GWGCWC	1 cut(s)	341
BccI	CCATC	8 cut(s)	20, 245, 322, 398, 607, 635, 643, 715
BceAI	ACGGC	1 cut(s)	675
BciT130I	CCWGG	1 cut(s)	132
BcoDI	GTCTC	2 cut(s)	61, 187
BfuAI	ACCTGC	1 cut(s)	348
BisI	GCNGC	2 cut(s)	164, 663
BlsI	GCNGC	2 cut(s)	165, 664
Bme1390I	CCNGG	1 cut(s)	132
BmgT120I	GGNCC	2 cut(s)	107, 309
BmiI	GGNNCC	2 cut(s)	302, 310
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	2 cut(s)	182, 224
BoxI	GACNNNNGTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	570
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	5 cut(s)	167, 177, 276, 304, 675
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	1 cut(s)	605
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	5 cut(s)	167, 177, 276, 304, 675
BseGI	GGATG	6 cut(s)	149, 173, 256, 333, 339, 654
BseLI	CCNNNNNNNGG	1 cut(s)	605
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	124
BseX3I	CGGCCG	1 cut(s)	164
BseYI	CCCAGC	1 cut(s)	665
Bsh1236I	CGCG	2 cut(s)	75, 163
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	6 cut(s)	109, 166, 194, 311, 423, 626
BsiEI	CGRYCG	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	341
BsiSI	CCGG	1 cut(s)	371
BslFI	GGGAC	2 cut(s)	22, 581
BslI	CCNNNNNNNGG	1 cut(s)	605
BsmAI	GTCTC	2 cut(s)	61, 187
BsmFI	GGGAC	2 cut(s)	22, 581
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	6 cut(s)	109, 166, 194, 311, 423, 626
Bso31I	GGTCTC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	341
BspACI	CCGC	4 cut(s)	163, 350, 644, 662
BspANI	GGCC	6 cut(s)	109, 166, 194, 311, 423, 626
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	2 cut(s)	75, 163
BspLI	GGNNCC	2 cut(s)	302, 310
BspMI	ACCTGC	1 cut(s)	348
BspTNI	GGTCTC	1 cut(s)	187
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	5 cut(s)	167, 177, 276, 304, 675
BssNI	GRCGYC	1 cut(s)	570
BssT1I	CCWWGG	2 cut(s)	177, 276
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	4 cut(s)	92, 205, 211, 523
Bst6I	CTCTTC	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	570
BstAPI	GCANNNNNTGC	2 cut(s)	243, 345
BstC8I	GCNNGC	4 cut(s)	77, 293, 350, 372
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	6 cut(s)	149, 173, 256, 333, 339, 654
BstFNI	CGCG	2 cut(s)	75, 163
BstMAI	GTCTC	2 cut(s)	61, 187
BstMCI	CGRYCG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	6 cut(s)	85, 243, 252, 292, 345, 354
BstNI	CCWGG	1 cut(s)	132
BstPAI	GACNNNNGTC	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	130
BstUI	CGCG	2 cut(s)	75, 163
BstZI	CGGCCG	1 cut(s)	164
BsuRI	GGCC	6 cut(s)	109, 166, 194, 311, 423, 626
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	6 cut(s)	149, 173, 256, 333, 339, 654
BtsI	GCAGTG	1 cut(s)	466
BtsIMutI	CAGTG	3 cut(s)	216, 466, 519
BveI	ACCTGC	1 cut(s)	348
Cac8I	GCNNGC	4 cut(s)	77, 293, 350, 372
CaiI	CAGNNNCTG	1 cut(s)	243
Cfr10I	RCCGGY	1 cut(s)	370
Cfr13I	GGNCC	2 cut(s)	107, 309
CseI	GACGC	1 cut(s)	545
CsiI	ACCWGGT	1 cut(s)	130
CviAII	CATG	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	219
DrdI	GACNNNNNNGTC	1 cut(s)	542
DseDI	GACNNNNNNGTC	1 cut(s)	542
EaeI	YGGCCR	2 cut(s)	164, 624
EagI	CGGCCG	1 cut(s)	164
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
EclXI	CGGCCG	1 cut(s)	164
Eco130I	CCWWGG	2 cut(s)	177, 276
Eco31I	GGTCTC	1 cut(s)	187
Eco32I	GATATC	2 cut(s)	496, 580
Eco52I	CGGCCG	1 cut(s)	164
Eco57I	CTGAAG	4 cut(s)	489, 525, 547, 578
EcoO109I	RGGNCCY	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	130
EcoRV	GATATC	2 cut(s)	496, 580
EcoT14I	CCWWGG	2 cut(s)	177, 276
ErhI	CCWWGG	2 cut(s)	177, 276
FaeI	CATG	1 cut(s)	199
FaiI	YATR	4 cut(s)	188, 197, 635, 730
FaqI	GGGAC	2 cut(s)	22, 581
FatI	CATG	1 cut(s)	195
FauI	CCCGC	2 cut(s)	357, 637
Fnu4HI	GCNGC	2 cut(s)	164, 663
FokI	GGATG	6 cut(s)	136, 160, 263, 340, 346, 661
Fsp4HI	GCNGC	2 cut(s)	164, 663
GluI	GCNGC	2 cut(s)	164, 663
GsaI	CCCAGC	1 cut(s)	669
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	6 cut(s)	109, 166, 194, 311, 423, 626
HapII	CCGG	1 cut(s)	371
HgaI	GACGC	1 cut(s)	545
Hin1I	GRCGYC	1 cut(s)	570
Hin1II	CATG	1 cut(s)	199
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	4 cut(s)	47, 377, 476, 512
HpaI	GTTAAC	1 cut(s)	451
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	3 cut(s)	515, 550, 667
Hpy166II	GTNNAC	2 cut(s)	451, 574
Hpy188III	TCNNGA	2 cut(s)	440, 583
Hpy8I	GTNNAC	2 cut(s)	451, 574
Hpy99I	CGWCG	4 cut(s)	26, 272, 643, 709
HpyAV	CCTTC	3 cut(s)	218, 253, 571
HpyCH4III	ACNGT	4 cut(s)	92, 205, 211, 523
HpyCH4IV	ACGT	2 cut(s)	570, 704
HpyCH4V	TGCA	4 cut(s)	88, 237, 291, 357
HpyF10VI	GCNNNNNNNGC	6 cut(s)	85, 243, 252, 292, 345, 354
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	2 cut(s)	570, 704
Hsp92I	GRCGYC	1 cut(s)	570
Hsp92II	CATG	1 cut(s)	199
KroI	GCCGGC	1 cut(s)	370
KroNI	GCCGGC	1 cut(s)	372
KspAI	GTTAAC	1 cut(s)	451
LpnPI	CCDG	9 cut(s)	105, 117, 144, 283, 325, 343, 384, 550, 651
LweI	GCATC	2 cut(s)	182, 224
MabI	ACCWGGT	1 cut(s)	130
MaeII	ACGT	2 cut(s)	570, 704
MaeIII	GTNAC	3 cut(s)	205, 556, 655
MboII	GAAGA	4 cut(s)	395, 401, 482, 503
MfeI	CAATTG	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	341
MlsI	TGGCCA	1 cut(s)	626
MluCI	AATT	2 cut(s)	7, 32
MluI	ACGCGT	1 cut(s)	73
MluNI	TGGCCA	1 cut(s)	626
MlyI	GAGTC	2 cut(s)	386, 470
MmeI	TCCRAC	3 cut(s)	90, 526, 672
Mox20I	TGGCCA	1 cut(s)	626
MroNI	GCCGGC	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	626
MseI	TTAA	1 cut(s)	450
MslI	CAYNNNNRTG	1 cut(s)	632
Msp20I	TGGCCA	1 cut(s)	626
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	2 cut(s)	75, 163
MwoI	GCNNNNNNNGC	6 cut(s)	85, 243, 252, 292, 345, 354
NaeI	GCCGGC	1 cut(s)	372
NgoMIV	GCCGGC	1 cut(s)	370
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	2 cut(s)	302, 310
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	3 cut(s)	205, 556, 655
PctI	GAATGC	1 cut(s)	239
PdiI	GCCGGC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	47, 512
PkrI	GCNGC	2 cut(s)	165, 664
PleI	GAGTC	2 cut(s)	385, 470
PpsI	GAGTC	2 cut(s)	385, 470
PshAI	GACNNNNGTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	665
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	302, 310
PspPI	GGNCC	2 cut(s)	107, 309
PstNI	CAGNNNCTG	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	632
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	2 cut(s)	164, 663
Sau96I	GGNCC	2 cut(s)	107, 309
SchI	GAGTC	2 cut(s)	386, 470
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	341
SexAI	ACCWGGT	1 cut(s)	130
SfaNI	GCATC	2 cut(s)	182, 224
SmiMI	CAYNNNNRTG	1 cut(s)	632
Sse9I	AATT	2 cut(s)	7, 32
SsiI	CCGC	4 cut(s)	163, 350, 644, 662
SspI	AATATT	2 cut(s)	84, 114
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	2 cut(s)	177, 276
TaaI	ACNGT	4 cut(s)	92, 205, 211, 523
TaiI	ACGT	2 cut(s)	573, 707
TaqI	TCGA	2 cut(s)	525, 582
TasI	AATT	2 cut(s)	7, 32
TauI	GCSGC	2 cut(s)	166, 665
TfiI	GAWTC	2 cut(s)	47, 512
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	3 cut(s)	216, 466, 526
TseFI	GTSAC	3 cut(s)	205, 556, 655
Tsp45I	GTSAC	3 cut(s)	205, 556, 655
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	3 cut(s)	216, 466, 526
ZraI	GACGTC	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.