Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001784

Physical Location & Seq

Genomic Coordinates Reverse (-)

83016577 .. 83016998

Gene Structure 422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG601800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCTAGTTCCGAAGCAAACGACGGTGACCACATGTCCCTATGGGAGCTATTAGGCTCTTCCTCTGACCAAGGCGTGTCATTGCACAGATTTACTATCGGAGGGCGAATTTTTACTGGAGGGCTACCTGGAGTCATCAATCGGACACCTGTGTCGTGGCCGAGGGCATCCAAGGCCGCCATAGAGGCCATGCCAAATGTGACAGTGGCATATGAGGAAGGAAAAGAATGCACTATATATTTGCTTGTTGGCTTGAAGGTCGGCGACGAAGCCAAGGAAATGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

95

Amino Acids

10.17

Weight (kDa)

5.0

Isoelectric Point (pI)

55.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14200
fragaria_vesca	FvH4_6g48331 FvH4_6g48340 FvH4_6g48360
malus_domestica	MD00G1131000.v1.1 MD09G1052200.v1.1 MD17G1031000.v1.1
prunus_persica	Prupe.3G288800_v2.0.a1
pyrus_communis	pycom111g04350 pycom17g02840 pycom17g04730
rosa_chinensis	RchiOBHm_Chr2g0168291 RchiOBHm_Chr2g0168301 RchiOBHm_Chr4g0388111
rosa_laevigata	RLG00000010079 RLG00000021486 RLG00000021487 RLG00000021762
rosa_multiflora	Rmu_sc0002180.1_g000027 Rmu_sc0002509.1_g000007 Rmu_sc0003354.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083170 Rroxscaffold_2G00083190 Rroxscaffold_2G00083200 Rroxscaffold_2G00083210 Rroxscaffold_3G00258810 Rroxscaffold_5G00334660
rosa_rugosa	Rorug02G0532500 Rorug03G0314900 Rorug07G0036900.1
rosa_samantha	Rh2AG601500 Rh2AG601600 Rh2AG601800 Rh2BG614800 Rh2BG615000 Rh2CG582300 Rh2CG582400 Rh2CG582600 Rh2DG625000 Rh2DG625200 Rh4AG020700 Rh4BG015000 Rh4CG021300 Rh4DG015700 Rh7BG163500
rosa_wichuraiana	Rw2G049940 Rw4G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	151
AciI	CCGC	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	158
AcsI	RAATTY	1 cut(s)	108
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	256
AhdI	GACNNNNNGTC	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
AoxI	GGCC	3 cut(s)	158, 174, 186
ApoI	RAATTY	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	129
BfaI	CTAG	1 cut(s)	6
BglI	GCCNNNNNGGC	1 cut(s)	185
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	129
BmeRI	GACNNNNNGTC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	176
BpmI	CTGGAG	2 cut(s)	138, 150
BsaJI	CCNNGG	4 cut(s)	70, 161, 171, 273
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	4 cut(s)	70, 161, 171, 273
BseGI	GGATG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	121
BshFI	GGCC	3 cut(s)	160, 176, 188
BslFI	GGGAC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	3 cut(s)	160, 176, 188
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	3 cut(s)	160, 176, 188
BspQI	GCTCTTC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	4 cut(s)	70, 161, 171, 273
BssT1I	CCWWGG	3 cut(s)	70, 171, 273
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	26, 205
Bst6I	CTCTTC	1 cut(s)	64
BstEII	GGTNACC	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 185
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	37
BstPI	GGTNACC	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	127
BsuRI	GGCC	3 cut(s)	160, 176, 188
BtsCI	GGATG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	210
CviAII	CATG	2 cut(s)	34, 190
CviJI	RGCY	8 cut(s)	49, 57, 124, 160, 176, 188, 252, 272
CviKI_1	RGCY	8 cut(s)	49, 57, 124, 160, 176, 188, 252, 272
DrdI	GACNNNNNNGTC	1 cut(s)	151
DriI	GACNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	158
Eam1104I	CTCTTC	1 cut(s)	64
Eam1105I	GACNNNNNGTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	64
Eco130I	CCWWGG	3 cut(s)	70, 171, 273
Eco91I	GGTNACC	1 cut(s)	26
EcoO65I	GGTNACC	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	3 cut(s)	70, 171, 273
ErhI	CCWWGG	3 cut(s)	70, 171, 273
FaeI	CATG	2 cut(s)	37, 193
FaiI	YATR	8 cut(s)	35, 43, 182, 191, 211, 213, 236, 238
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	2 cut(s)	33, 189
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	1 cut(s)	177
GsuI	CTGGAG	2 cut(s)	138, 150
HaeIII	GGCC	3 cut(s)	160, 176, 188
Hin1II	CATG	2 cut(s)	37, 193
HinfI	GANTC	1 cut(s)	132
HphI	GGTGA	1 cut(s)	38
Hpy188I	TCNGA	4 cut(s)	13, 67, 101, 144
Hpy99I	CGWCG	2 cut(s)	26, 269
HpyAV	CCTTC	2 cut(s)	212, 250
HpyCH4III	ACNGT	2 cut(s)	26, 205
HpyCH4V	TGCA	2 cut(s)	85, 231
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 185
Hsp92II	CATG	2 cut(s)	37, 193
LguI	GCTCTTC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	4 cut(s)	102, 114, 141, 162
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	26, 199
MboII	GAAGA	1 cut(s)	51
MluCI	AATT	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	141
MnlI	CCTC	6 cut(s)	73, 95, 113, 156, 178, 208
MspR9I	CCNGG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	173, 185
NdeI	CATATG	1 cut(s)	211
NlaIII	CATG	2 cut(s)	37, 193
NmeAIII	GCCGAG	1 cut(s)	186
NmuCI	GTSAC	2 cut(s)	26, 199
NspI	RCATGY	1 cut(s)	37
PciI	ACATGT	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	64
PctI	GAATGC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PscI	ACATGT	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	127
PspEI	GGTNACC	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	127
SapI	GCTCTTC	1 cut(s)	64
SatI	GCNGC	1 cut(s)	177
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	4 cut(s)	51, 130, 151, 261
SfaNI	GCATC	1 cut(s)	176
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	3 cut(s)	70, 171, 273
TaaI	ACNGT	2 cut(s)	26, 205
TasI	AATT	1 cut(s)	108
TauI	GCSGC	1 cut(s)	179
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	2 cut(s)	26, 199
Tsp45I	GTSAC	2 cut(s)	26, 199
TspRI	CASTG	1 cut(s)	210
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	1 cut(s)	37
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.