E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G14200 |
| fragaria_vesca | FvH4_6g48331 FvH4_6g48340 FvH4_6g48360 |
| malus_domestica | MD00G1131000.v1.1 MD09G1052200.v1.1 MD17G1031000.v1.1 |
| prunus_persica | Prupe.3G288800_v2.0.a1 |
| pyrus_communis | pycom111g04350 pycom17g02840 pycom17g04730 |
| rosa_chinensis | RchiOBHm_Chr2g0168291 RchiOBHm_Chr2g0168301 RchiOBHm_Chr4g0388111 |
| rosa_laevigata | RLG00000010079 RLG00000021486 RLG00000021487 RLG00000021762 |
| rosa_multiflora | Rmu_sc0002180.1_g000027 Rmu_sc0002509.1_g000007 Rmu_sc0003354.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00083170 Rroxscaffold_2G00083190 Rroxscaffold_2G00083200 Rroxscaffold_2G00083210 Rroxscaffold_3G00258810 Rroxscaffold_5G00334660 |
| rosa_rugosa | Rorug02G0532500 Rorug03G0314900 Rorug07G0036900.1 |
| rosa_samantha | Rh2AG601500 Rh2AG601600 Rh2AG601800 Rh2BG614800 Rh2BG615000 Rh2CG582300 Rh2CG582400 Rh2CG582600 Rh2DG625000 Rh2DG625200 Rh4AG020700 Rh4BG015000 Rh4CG021300 Rh4DG015700 Rh7BG163500 |
| rosa_wichuraiana | Rw2G049940 Rw4G001380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 169 |
| AciI | CCGC | 2 cut(s) | 167, 169 |
| AcuI | CTGAAG | 1 cut(s) | 97 |
| AfaI | GTAC | 1 cut(s) | 228 |
| AflIII | ACRYGT | 1 cut(s) | 231 |
| AgsI | TTSAA | 1 cut(s) | 252 |
| AluBI | AGCT | 1 cut(s) | 65 |
| AluI | AGCT | 1 cut(s) | 65 |
| ApeKI | GCWGC | 2 cut(s) | 106, 163 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 186 |
| AspLEI | GCGC | 1 cut(s) | 111 |
| AsuII | TTCGAA | 1 cut(s) | 35 |
| BbvI | GCAGC | 2 cut(s) | 93, 150 |
| BisI | GCNGC | 4 cut(s) | 107, 164, 167, 170 |
| BlsI | GCNGC | 4 cut(s) | 108, 165, 168, 171 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 133, 165 |
| Bpu14I | TTCGAA | 1 cut(s) | 35 |
| BsaJI | CCNNGG | 2 cut(s) | 167, 208 |
| BseDI | CCNNGG | 2 cut(s) | 167, 208 |
| BseGI | GGATG | 1 cut(s) | 201 |
| BseRI | GAGGAG | 2 cut(s) | 154, 197 |
| BseXI | GCAGC | 2 cut(s) | 93, 150 |
| Bsh1236I | CGCG | 1 cut(s) | 169 |
| Bsp119I | TTCGAA | 1 cut(s) | 35 |
| BspACI | CCGC | 2 cut(s) | 167, 169 |
| BspFNI | CGCG | 1 cut(s) | 169 |
| BspT104I | TTCGAA | 1 cut(s) | 35 |
| BssECI | CCNNGG | 2 cut(s) | 167, 208 |
| BstBI | TTCGAA | 1 cut(s) | 35 |
| BstDSI | CCRYGG | 1 cut(s) | 167 |
| BstF5I | GGATG | 1 cut(s) | 201 |
| BstFNI | CGCG | 1 cut(s) | 169 |
| BstHHI | GCGC | 1 cut(s) | 111 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 21, 132, 169 |
| BstNSI | RCATGY | 1 cut(s) | 235 |
| BstUI | CGCG | 1 cut(s) | 169 |
| BstV1I | GCAGC | 2 cut(s) | 93, 150 |
| BtgI | CCRYGG | 1 cut(s) | 167 |
| BtsCI | GGATG | 1 cut(s) | 201 |
| BtsIMutI | CAGTG | 1 cut(s) | 121 |
| CfoI | GCGC | 1 cut(s) | 111 |
| Cfr42I | CCGCGG | 1 cut(s) | 170 |
| Csp6I | GTAC | 1 cut(s) | 227 |
| CviAII | CATG | 2 cut(s) | 123, 232 |
| CviJI | RGCY | 2 cut(s) | 65, 79 |
| CviKI_1 | RGCY | 2 cut(s) | 65, 79 |
| CviQI | GTAC | 1 cut(s) | 227 |
| Eco57I | CTGAAG | 1 cut(s) | 97 |
| FaeI | CATG | 2 cut(s) | 126, 235 |
| FaiI | YATR | 3 cut(s) | 75, 124, 233 |
| FatI | CATG | 2 cut(s) | 122, 231 |
| Fnu4HI | GCNGC | 4 cut(s) | 107, 164, 167, 170 |
| FokI | GGATG | 1 cut(s) | 188 |
| Fsp4HI | GCNGC | 4 cut(s) | 107, 164, 167, 170 |
| GlaI | GCGC | 1 cut(s) | 110 |
| GluI | GCNGC | 4 cut(s) | 107, 164, 167, 170 |
| HhaI | GCGC | 1 cut(s) | 111 |
| Hin1II | CATG | 2 cut(s) | 126, 235 |
| Hin6I | GCGC | 1 cut(s) | 109 |
| HinP1I | GCGC | 1 cut(s) | 109 |
| HinfI | GANTC | 3 cut(s) | 98, 119, 248 |
| Hpy166II | GTNNAC | 1 cut(s) | 229 |
| Hpy8I | GTNNAC | 1 cut(s) | 229 |
| HpyAV | CCTTC | 2 cut(s) | 197, 202 |
| HpyCH4V | TGCA | 1 cut(s) | 135 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 21, 132, 169 |
| Hsp92II | CATG | 2 cut(s) | 126, 235 |
| HspAI | GCGC | 1 cut(s) | 109 |
| KspI | CCGCGG | 1 cut(s) | 170 |
| LpnPI | CCDG | 5 cut(s) | 70, 71, 121, 158, 228 |
| Lsp1109I | GCAGC | 2 cut(s) | 93, 150 |
| MboII | GAAGA | 1 cut(s) | 187 |
| MlyI | GAGTC | 1 cut(s) | 107 |
| MnlI | CCTC | 9 cut(s) | 39, 43, 112, 132, 135, 209, 215, 218, 258 |
| MroXI | GAANNNNTTC | 1 cut(s) | 186 |
| MseI | TTAA | 1 cut(s) | 236 |
| MspA1I | CMGCKG | 1 cut(s) | 169 |
| MvnI | CGCG | 1 cut(s) | 169 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 21, 132, 169 |
| NlaIII | CATG | 2 cut(s) | 126, 235 |
| NmeAIII | GCCGAG | 1 cut(s) | 20 |
| NspI | RCATGY | 1 cut(s) | 235 |
| NspV | TTCGAA | 1 cut(s) | 35 |
| PciI | ACATGT | 1 cut(s) | 231 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 41 |
| PdmI | GAANNNNTTC | 1 cut(s) | 186 |
| PfeI | GAWTC | 2 cut(s) | 119, 248 |
| PkrI | GCNGC | 4 cut(s) | 108, 165, 168, 171 |
| PleI | GAGTC | 1 cut(s) | 106 |
| PpsI | GAGTC | 1 cut(s) | 106 |
| PscI | ACATGT | 1 cut(s) | 231 |
| RsaI | GTAC | 1 cut(s) | 228 |
| RsaNI | GTAC | 1 cut(s) | 227 |
| SacII | CCGCGG | 1 cut(s) | 170 |
| SaqAI | TTAA | 1 cut(s) | 236 |
| SatI | GCNGC | 4 cut(s) | 107, 164, 167, 170 |
| SchI | GAGTC | 1 cut(s) | 107 |
| SetI | ASST | 4 cut(s) | 54, 67, 189, 269 |
| Sfr303I | CCGCGG | 1 cut(s) | 170 |
| SfuI | TTCGAA | 1 cut(s) | 35 |
| SgrBI | CCGCGG | 1 cut(s) | 170 |
| SsiI | CCGC | 2 cut(s) | 167, 169 |
| TaqI | TCGA | 2 cut(s) | 35, 96 |
| TatI | WGTACW | 1 cut(s) | 226 |
| TauI | GCSGC | 2 cut(s) | 169, 172 |
| TfiI | GAWTC | 2 cut(s) | 119, 248 |
| Tru1I | TTAA | 1 cut(s) | 236 |
| Tru9I | TTAA | 1 cut(s) | 236 |
| TscAI | CASTG | 1 cut(s) | 121 |
| TseI | GCWGC | 2 cut(s) | 106, 163 |
| TspDTI | ATGAA | 1 cut(s) | 111 |
| TspRI | CASTG | 1 cut(s) | 121 |
| XceI | RCATGY | 1 cut(s) | 235 |
| XmnI | GAANNNNTTC | 1 cut(s) | 186 |