Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001784

Physical Location & Seq

Genomic Coordinates Reverse (-)

36412769 .. 36415849

Gene Structure 3081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGCTGGAACAACAACCGAGGGCCGCTAGTGGTACCGGCATCCAAGGCATCCATAGACGCCATGGCGAAAGTGGAAGTGACGGCAGAGGCAGGGCCATCGGAGTGCAGTATCTGTTTGGAAGGCTTGAAGGTGGGCTGTGAGGCCAATGAGATGCCTATTTGTAAGCACAGGTTTCATTCAGTTTGCATCGAAACTTGGCTTCTCCGGCATGCTTCATGCCCGCTTTGCAGGTCCACTATACCAATACTAGAGGAAGATCAGGACAACGGCTGGAATAGCGTTTACCAAGCTGATGATCGTAATAGCATATTTAACATTGATGTATTGGAGGTTCAACCTGTTGAGTGGGTGTGTCCTCGCCCCTTGAGATGGAGCCACGTACAGCCCCAACGAAAGGCCCAAAACCCACCACTAAAACCCACCCAGCTTTCGTGGGCATCTTCTTTCCCGAATCCCTCAATCTCCTTCAGTTGCACCACGACCCCTCCTAATCTCATTCGCACACCCAACAAGGTTTTTCGTGCCAGTATCCCTTCACCTGTGCCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

185

Amino Acids

20.48

Weight (kDa)

6.93

Isoelectric Point (pI)

57.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	35 - 78	1.4e-11	Ring finger domain
zf-RING_11	PF17123	35 - 64	2.6e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	35 - 77	5.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	36 - 78	1.4e-06	RING-H2 zinc finger domain
zf-C3HC4	PF00097	36 - 77	1.9e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14200
fragaria_vesca	FvH4_6g48331 FvH4_6g48340 FvH4_6g48360
malus_domestica	MD00G1131000.v1.1 MD09G1052200.v1.1 MD17G1031000.v1.1
prunus_persica	Prupe.3G288800_v2.0.a1
pyrus_communis	pycom111g04350 pycom17g02840 pycom17g04730
rosa_chinensis	RchiOBHm_Chr2g0168291 RchiOBHm_Chr2g0168301 RchiOBHm_Chr4g0388111
rosa_laevigata	RLG00000010079 RLG00000021486 RLG00000021487 RLG00000021762
rosa_multiflora	Rmu_sc0002180.1_g000027 Rmu_sc0002509.1_g000007 Rmu_sc0003354.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083170 Rroxscaffold_2G00083190 Rroxscaffold_2G00083200 Rroxscaffold_2G00083210 Rroxscaffold_3G00258810 Rroxscaffold_5G00334660
rosa_rugosa	Rorug02G0532500 Rorug03G0314900 Rorug07G0036900.1
rosa_samantha	Rh2AG601500 Rh2AG601600 Rh2AG601800 Rh2BG614800 Rh2BG615000 Rh2CG582300 Rh2CG582400 Rh2CG582600 Rh2DG625000 Rh2DG625200 Rh4AG020700 Rh4BG015000 Rh4CG021300 Rh4DG015700 Rh7BG163500
rosa_wichuraiana	Rw2G049940 Rw4G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	222
Acc65I	GGTACC	1 cut(s)	34
AccB1I	GGYRCC	1 cut(s)	34
AciI	CCGC	2 cut(s)	26, 224
AcuI	CTGAAG	1 cut(s)	454
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	2 cut(s)	36, 384
AfiI	CCNNNNNNNGG	2 cut(s)	372, 397
AgsI	TTSAA	2 cut(s)	130, 338
AluBI	AGCT	2 cut(s)	293, 430
AluI	AGCT	2 cut(s)	293, 430
AlwNI	CAGNNNCTG	1 cut(s)	114
AoxI	GGCC	4 cut(s)	23, 95, 144, 399
Asp718I	GGTACC	1 cut(s)	34
AspS9I	GGNCC	4 cut(s)	23, 95, 234, 400
AsuHPI	GGTGA	1 cut(s)	531
AvaII	GGWCC	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	34
BccI	CCATC	2 cut(s)	106, 366
BceAI	ACGGC	2 cut(s)	99, 286
BcgI	CGANNNNNNTGC	2 cut(s)	81, 115
BciVI	GTATCC	1 cut(s)	542
BfaI	CTAG	2 cut(s)	29, 251
BfuAI	ACCTGC	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	542
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	4 cut(s)	23, 95, 234, 400
BmiI	GGNNCC	2 cut(s)	36, 377
BmsI	GCATC	5 cut(s)	50, 59, 144, 198, 449
BpuEI	CTTGAG	1 cut(s)	388
BsaAI	YACGTR	1 cut(s)	382
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	3 cut(s)	19, 45, 63
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 397
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	528
BseDI	CCNNGG	3 cut(s)	19, 45, 63
BseGI	GGATG	2 cut(s)	41, 50
BseLI	CCNNNNNNNGG	2 cut(s)	372, 397
BseNI	ACTGG	1 cut(s)	528
BseYI	CCCAGC	1 cut(s)	426
BsgI	GTGCAG	1 cut(s)	127
BshFI	GGCC	4 cut(s)	25, 97, 146, 401
BshNI	GGYRCC	1 cut(s)	34
BsiSI	CCGG	2 cut(s)	38, 208
BslI	CCNNNNNNNGG	2 cut(s)	372, 397
BsnI	GGCC	4 cut(s)	25, 97, 146, 401
Bsp143I	GATC	2 cut(s)	259, 298
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	2 cut(s)	26, 224
BspANI	GGCC	4 cut(s)	25, 97, 146, 401
BspLI	GGNNCC	2 cut(s)	36, 377
BspMI	ACCTGC	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	528
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	19, 45, 63
BssMI	GATC	2 cut(s)	259, 298
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	2 cut(s)	45, 63
BstACI	GRCGYC	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	382
BstC8I	GCNNGC	2 cut(s)	213, 224
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	41, 50
BstKTI	GATC	2 cut(s)	262, 301
BstMBI	GATC	2 cut(s)	259, 298
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 208, 228, 279
BstNSI	RCATGY	1 cut(s)	215
BsuI	GTATCC	1 cut(s)	542
BsuRI	GGCC	4 cut(s)	25, 97, 146, 401
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	41, 50
BtsIMutI	CAGTG	1 cut(s)	550
BveI	ACCTGC	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	213, 224
CaiI	CAGNNNCTG	1 cut(s)	114
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	4 cut(s)	23, 95, 234, 400
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	35, 383
CviAII	CATG	3 cut(s)	64, 212, 219
CviQI	GTAC	2 cut(s)	35, 383
DpnI	GATC	2 cut(s)	261, 300
DpnII	GATC	2 cut(s)	259, 298
Eco130I	CCWWGG	2 cut(s)	45, 63
Eco47I	GGWCC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	454
EcoT14I	CCWWGG	2 cut(s)	45, 63
ErhI	CCWWGG	2 cut(s)	45, 63
FaeI	CATG	3 cut(s)	67, 215, 222
FaiI	YATR	6 cut(s)	56, 65, 213, 220, 242, 311
FatI	CATG	3 cut(s)	63, 211, 218
FauI	CCCGC	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	2 cut(s)	28, 37
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	2 cut(s)	29, 251
GluI	GCNGC	1 cut(s)	26
GsaI	CCCAGC	1 cut(s)	430
HaeIII	GGCC	4 cut(s)	25, 97, 146, 401
HapII	CCGG	2 cut(s)	38, 208
HgaI	GACGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	67, 215, 222
HinfI	GANTC	1 cut(s)	454
HpaII	CCGG	2 cut(s)	38, 208
HphI	GGTGA	1 cut(s)	531
Hpy166II	GTNNAC	2 cut(s)	237, 286
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	2 cut(s)	263, 451
Hpy8I	GTNNAC	2 cut(s)	237, 286
HpyAV	CCTTC	4 cut(s)	116, 124, 478, 546
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	4 cut(s)	108, 189, 231, 477
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 208, 228, 279
HpySE526I	ACGT	1 cut(s)	381
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	67, 215, 222
KpnI	GGTACC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	259, 298
LmnI	GCTCC	1 cut(s)	375
LweI	GCATC	5 cut(s)	50, 59, 144, 198, 449
MaeI	CTAG	2 cut(s)	29, 251
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	2 cut(s)	261, 300
MboI	GATC	2 cut(s)	259, 298
MboII	GAAGA	2 cut(s)	269, 435
MnlI	CCTC	8 cut(s)	14, 82, 136, 247, 325, 369, 469, 498
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	103
MspI	CCGG	2 cut(s)	38, 208
MwoI	GCNNNNNNNGC	4 cut(s)	47, 208, 228, 279
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	2 cut(s)	259, 298
NlaIII	CATG	3 cut(s)	67, 215, 222
NlaIV	GGNNCC	2 cut(s)	36, 377
NmuCI	GTSAC	1 cut(s)	79
NspI	RCATGY	1 cut(s)	215
PaeI	GCATGC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	454
PkrI	GCNGC	1 cut(s)	27
Ppu21I	YACGTR	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	426
PspN4I	GGNNCC	2 cut(s)	36, 377
PspPI	GGNCC	4 cut(s)	23, 95, 234, 400
PsrI	GAACNNNNNNTAC	2 cut(s)	318, 350
PstNI	CAGNNNCTG	1 cut(s)	114
RsaI	GTAC	2 cut(s)	36, 384
RsaNI	GTAC	2 cut(s)	35, 383
RseI	CAYNNNNRTG	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	2 cut(s)	259, 298
Sau96I	GGNCC	4 cut(s)	23, 95, 234, 400
SfaNI	GCATC	5 cut(s)	50, 59, 144, 198, 449
SinI	GGWCC	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	103
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
SphI	GCATGC	1 cut(s)	215
SsiI	CCGC	2 cut(s)	26, 224
SspMI	CTAG	2 cut(s)	29, 251
StyI	CCWWGG	2 cut(s)	45, 63
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	1 cut(s)	192
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	2 cut(s)	167, 207
VpaK11BI	GGWCC	1 cut(s)	234
XceI	RCATGY	1 cut(s)	215
XcmI	CCANNNNNNNNNTGG	2 cut(s)	61, 70
XspI	CTAG	2 cut(s)	29, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.