FvH4_6g48331

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001784
Physical Location & Seq
Reverse (-)
36411634 .. 36412508
875 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48331.t1

Sequence Viewer

Length: 381 bp
ATGTCTGAGGACGACGTCGTTCGCAGTTACACATTTAGTAATCCAAGAACACACGAAATTCCCGTGTACACCAGAAATGCATATTCCAGGCAACAATTACTTGATCTCAGGCACGCTGATCGGCCACCCGTGGCGGTGGGGGCATCAAGGGCGTCCATAGAAACCATGTCAACGGTGATAGTCACTGAAGAAGGAACGGATTGCAGTATATGCTTGGAAAGCTTCAAAGTCTCTGGTGAAGCCAAGGAGATGGCTTGTACGCACAGGTTCCACTCCGACTGTATTGAAAACTGGCTGCGAATGCGTGCTTCTTGCCCACTTTGCAGGTTCACCATGCCCGTGAACTCGGACGAAGAGGTGAATAGTCAATTGCACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

127

Amino Acids

14.33

Weight (kDa)

5.33

Isoelectric Point (pI)

67.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 67 - 109 4.5e-14 Ring finger domain
zf-RING_11 PF17123 67 - 95 4.2e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 68 - 108 2.6e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 68 - 108 5e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 68 - 106 5.9e-07 RING-type zinc-finger
zf-rbx1 PF12678 84 - 109 3.6e-08 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 18
Acc36I ACCTGC 1 cut(s) 315
AciI CCGC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 122
AcsI RAATTY 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 207
AcyI GRCGYC 2 cut(s) 15, 152
AfaI GTAC 2 cut(s) 68, 259
AgsI TTSAA 2 cut(s) 226, 287
AjnI CCWGG 1 cut(s) 86
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 235
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 295
ApoI RAATTY 1 cut(s) 57
AsuHPI GGTGA 4 cut(s) 187, 248, 322, 370
BauI CACGAG 1 cut(s) 374
BbvI GCAGC 1 cut(s) 282
BccI CCATC 1 cut(s) 244
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 235
BfuAI ACCTGC 1 cut(s) 315
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 1 cut(s) 152
BsaHI GRCGYC 2 cut(s) 15, 152
BsaJI CCNNGG 2 cut(s) 129, 243
Bse1I ACTGG 1 cut(s) 296
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 129, 243
BseMII CTCAG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 282
BshFI GGCC 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 235
BsmI GAATGC 1 cut(s) 306
BsnI GGCC 1 cut(s) 124
Bsp1407I TGTACA 1 cut(s) 66
Bsp143I GATC 2 cut(s) 103, 118
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 269
BspMI ACCTGC 1 cut(s) 315
BsrGI TGTACA 1 cut(s) 66
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 2 cut(s) 129, 243
BssMI GATC 2 cut(s) 103, 118
BssNI GRCGYC 2 cut(s) 15, 152
BssSI CACGAG 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 374
Bst2UI CCWGG 1 cut(s) 88
Bst4CI ACNGT 2 cut(s) 175, 281
Bst6I CTCTTC 1 cut(s) 348
BstACI GRCGYC 2 cut(s) 15, 152
BstAPI GCANNNNNTGC 1 cut(s) 210
BstAUI TGTACA 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 114, 306
BstDEI CTNAG 2 cut(s) 6, 107
BstDSI CCRYGG 1 cut(s) 129
BstKTI GATC 2 cut(s) 106, 121
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 2 cut(s) 103, 118
BstMWI GCNNNNNNNGC 6 cut(s) 140, 149, 210, 219, 301, 321
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 282
BstXI CCANNNNNNTGG 1 cut(s) 250
BsuRI GGCC 1 cut(s) 124
BtgI CCRYGG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 183
BveI ACCTGC 1 cut(s) 315
Cac8I GCNNGC 2 cut(s) 114, 306
CseI GACGC 1 cut(s) 141
Csp6I GTAC 2 cut(s) 67, 258
CviAII CATG 2 cut(s) 166, 334
CviJI RGCY 5 cut(s) 124, 222, 242, 254, 295
CviKI_1 RGCY 5 cut(s) 124, 222, 242, 254, 295
CviQI GTAC 2 cut(s) 67, 258
DdeI CTNAG 2 cut(s) 6, 107
DpnI GATC 2 cut(s) 105, 120
DpnII GATC 2 cut(s) 103, 118
EaeI YGGCCR 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 243
Eco57I CTGAAG 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 169, 337
FaiI YATR 6 cut(s) 82, 158, 167, 209, 211, 335
FatI CATG 2 cut(s) 165, 333
Fnu4HI GCNGC 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 296
GluI GCNGC 1 cut(s) 296
HaeIII GGCC 1 cut(s) 124
HgaI GACGC 1 cut(s) 141
Hin1I GRCGYC 2 cut(s) 15, 152
Hin1II CATG 2 cut(s) 169, 337
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HindIII AAGCTT 1 cut(s) 220
HphI GGTGA 4 cut(s) 187, 248, 322, 370
Hpy166II GTNNAC 5 cut(s) 67, 69, 171, 330, 343
Hpy188I TCNGA 3 cut(s) 7, 277, 349
Hpy8I GTNNAC 5 cut(s) 67, 69, 171, 330, 343
Hpy99I CGWCG 2 cut(s) 17, 20
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 2 cut(s) 175, 281
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 80, 204, 324, 373
HpyF10VI GCNNNNNNNGC 6 cut(s) 140, 149, 210, 219, 301, 321
HpyF3I CTNAG 2 cut(s) 6, 107
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 2 cut(s) 15, 152
Hsp92II CATG 2 cut(s) 169, 337
Kzo9I GATC 2 cut(s) 103, 118
LpnPI CCDG 8 cut(s) 73, 85, 94, 100, 219, 250, 277, 310
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 1 cut(s) 152
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 26, 181
MalI GATC 2 cut(s) 105, 120
MboI GATC 2 cut(s) 103, 118
MboII GAAGA 2 cut(s) 200, 365
MfeI CAATTG 1 cut(s) 368
MluCI AATT 3 cut(s) 57, 95, 368
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 1 cut(s) 349
Mph1103I ATGCAT 1 cut(s) 82
MslI CAYNNNNRTG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 88
MunI CAATTG 1 cut(s) 368
Mva1269I GAATGC 1 cut(s) 306
MvaI CCWGG 1 cut(s) 88
MwoI GCNNNNNNNGC 6 cut(s) 140, 149, 210, 219, 301, 321
NdeII GATC 2 cut(s) 103, 118
NlaIII CATG 2 cut(s) 169, 337
NlaIV GGNNCC 1 cut(s) 269
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PctI GAATGC 1 cut(s) 306
PflFI GACNNNGTC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 269
PsyI GACNNNGTC 1 cut(s) 14
RsaI GTAC 2 cut(s) 68, 259
RsaNI GTAC 2 cut(s) 67, 258
RseI CAYNNNNRTG 1 cut(s) 338
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 2 cut(s) 103, 118
ScrFI CCNGG 1 cut(s) 88
SetI ASST 5 cut(s) 18, 224, 269, 329, 360
SfaNI GCATC 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 338
Sse9I AATT 3 cut(s) 57, 95, 368
SsiI CCGC 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 175, 281
TaiI ACGT 1 cut(s) 18
TasI AATT 3 cut(s) 57, 95, 368
TatI WGTACW 1 cut(s) 66
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 181
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 1 cut(s) 190
Tth111I GACNNNGTC 1 cut(s) 14
XapI RAATTY 1 cut(s) 57
ZraI GACGTC 1 cut(s) 16
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.