Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001784

Physical Location & Seq

Genomic Coordinates Reverse (-)

76067041 .. 76067459

Gene Structure 419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG582600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCTAGTTCCGAAGCAAATGACGGTGACCACATGTCCCTATGGGAGCTATTAGGCTCTTCCTCTGACCAAGGCGTGTCATTGCACAGATTTACTATCGGAGGGCGAATTTTTACTGGAGGGCTACCTGGAGTCATCAATCGGACACCTGTGTCGTGGCCGAGGGCATCCAAGGCCGCCATAGAGGCCATGCCAAATGTAACAGTGACATATGAGGAAGGAAAAGAATGCAGTATATATTTGCTTGATGGCTTGAAGGCCGGCGACGAAGCCAAGGAAATGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

95

Amino Acids

10.17

Weight (kDa)

4.83

Isoelectric Point (pI)

54.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14200
fragaria_vesca	FvH4_6g48331 FvH4_6g48340 FvH4_6g48360
malus_domestica	MD00G1131000.v1.1 MD09G1052200.v1.1 MD17G1031000.v1.1
prunus_persica	Prupe.3G288800_v2.0.a1
pyrus_communis	pycom111g04350 pycom17g02840 pycom17g04730
rosa_chinensis	RchiOBHm_Chr2g0168291 RchiOBHm_Chr2g0168301 RchiOBHm_Chr4g0388111
rosa_laevigata	RLG00000010079 RLG00000021486 RLG00000021487 RLG00000021762
rosa_multiflora	Rmu_sc0002180.1_g000027 Rmu_sc0002509.1_g000007 Rmu_sc0003354.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083170 Rroxscaffold_2G00083190 Rroxscaffold_2G00083200 Rroxscaffold_2G00083210 Rroxscaffold_3G00258810 Rroxscaffold_5G00334660
rosa_rugosa	Rorug02G0532500 Rorug03G0314900 Rorug07G0036900.1
rosa_samantha	Rh2AG601500 Rh2AG601600 Rh2AG601800 Rh2BG614800 Rh2BG615000 Rh2CG582300 Rh2CG582400 Rh2CG582600 Rh2DG625000 Rh2DG625200 Rh4AG020700 Rh4BG015000 Rh4CG021300 Rh4DG015700 Rh7BG163500
rosa_wichuraiana	Rw2G049940 Rw4G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	151
AciI	CCGC	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	158
AcsI	RAATTY	1 cut(s)	108
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	256
AhdI	GACNNNNNGTC	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
AoxI	GGCC	4 cut(s)	158, 174, 186, 258
ApoI	RAATTY	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	38
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	129
BfaI	CTAG	1 cut(s)	6
BglI	GCCNNNNNGGC	1 cut(s)	185
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	129
BmeRI	GACNNNNNGTC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	176
BpmI	CTGGAG	2 cut(s)	138, 150
BsaJI	CCNNGG	4 cut(s)	70, 161, 171, 273
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	4 cut(s)	70, 161, 171, 273
BseGI	GGATG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	121
BshFI	GGCC	4 cut(s)	160, 176, 188, 260
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	4 cut(s)	160, 176, 188, 260
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	4 cut(s)	160, 176, 188, 260
BspQI	GCTCTTC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	4 cut(s)	70, 161, 171, 273
BssT1I	CCWWGG	3 cut(s)	70, 171, 273
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	26, 205
Bst6I	CTCTTC	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	262
BstEII	GGTNACC	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 185
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	37
BstPI	GGTNACC	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	127
BsuRI	GGCC	4 cut(s)	160, 176, 188, 260
BtsCI	GGATG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	260
CviAII	CATG	2 cut(s)	34, 190
CviJI	RGCY	9 cut(s)	49, 57, 124, 160, 176, 188, 252, 260, 272
CviKI_1	RGCY	9 cut(s)	49, 57, 124, 160, 176, 188, 252, 260, 272
DrdI	GACNNNNNNGTC	1 cut(s)	151
DriI	GACNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	158
Eam1104I	CTCTTC	1 cut(s)	64
Eam1105I	GACNNNNNGTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	64
Eco130I	CCWWGG	3 cut(s)	70, 171, 273
Eco91I	GGTNACC	1 cut(s)	26
EcoO65I	GGTNACC	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	3 cut(s)	70, 171, 273
ErhI	CCWWGG	3 cut(s)	70, 171, 273
FaeI	CATG	2 cut(s)	37, 193
FaiI	YATR	8 cut(s)	35, 43, 182, 191, 211, 213, 236, 238
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	2 cut(s)	33, 189
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	1 cut(s)	177
GsuI	CTGGAG	2 cut(s)	138, 150
HaeIII	GGCC	4 cut(s)	160, 176, 188, 260
HapII	CCGG	1 cut(s)	261
Hin1II	CATG	2 cut(s)	37, 193
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	1 cut(s)	38
Hpy188I	TCNGA	4 cut(s)	13, 67, 101, 144
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	212, 250
HpyCH4III	ACNGT	2 cut(s)	26, 205
HpyCH4V	TGCA	2 cut(s)	85, 231
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 185
Hsp92II	CATG	2 cut(s)	37, 193
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
LguI	GCTCTTC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	5 cut(s)	102, 114, 141, 162, 274
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	3 cut(s)	26, 199, 205
MboII	GAAGA	1 cut(s)	51
MluCI	AATT	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	141
MnlI	CCTC	6 cut(s)	73, 95, 113, 156, 178, 208
MroNI	GCCGGC	1 cut(s)	260
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	173, 185
NaeI	GCCGGC	1 cut(s)	262
NdeI	CATATG	1 cut(s)	211
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	2 cut(s)	37, 193
NmeAIII	GCCGAG	1 cut(s)	186
NmuCI	GTSAC	2 cut(s)	26, 205
NspI	RCATGY	1 cut(s)	37
PciI	ACATGT	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	64
PctI	GAATGC	1 cut(s)	233
PdiI	GCCGGC	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PscI	ACATGT	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	127
PspEI	GGTNACC	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	127
SapI	GCTCTTC	1 cut(s)	64
SatI	GCNGC	1 cut(s)	177
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	3 cut(s)	51, 130, 151
SfaNI	GCATC	1 cut(s)	176
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	3 cut(s)	70, 171, 273
TaaI	ACNGT	2 cut(s)	26, 205
TasI	AATT	1 cut(s)	108
TauI	GCSGC	1 cut(s)	179
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	2 cut(s)	26, 205
Tsp45I	GTSAC	2 cut(s)	26, 205
TspRI	CASTG	1 cut(s)	210
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	1 cut(s)	37
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.