Rh2DG625200

RING-type zinc-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001784
Physical Location & Seq
Reverse (-)
85479976 .. 85480390
415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG625200.1

Sequence Viewer

Length: 288 bp
ATGTCTAGTTCCGAAGCAAACGACGGTGACCACATGTCCCTATGGGAGCTATTAGGCTCTTCGTCTGACCAAGGCGTGTCATTGCACAGATTTACTATCGGAGGGCGAATTTTTACTGGAGGGCTACCTGGAGTCATCAATCGGACACCTGTGTCGTGGCCGAGGGCATCCAAGGCCGCCATAGAGGCCATGCCAAATGTGACAGTGGCATATGAGGAAGGAAAAGAATGCAGTATATATTTGCTTGATGGCTTGAAGGTCGGCGACGAAGCCAAGGAAATGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

95

Amino Acids

10.17

Weight (kDa)

4.83

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 151
AciI CCGC 1 cut(s) 177
AcoI YGGCCR 1 cut(s) 158
AcsI RAATTY 1 cut(s) 108
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 1 cut(s) 256
AhdI GACNNNNNGTC 1 cut(s) 34
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
AoxI GGCC 3 cut(s) 158, 174, 186
ApoI RAATTY 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 38
BccI CCATC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 129
BfaI CTAG 1 cut(s) 6
BglI GCCNNNNNGGC 1 cut(s) 185
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 129
BmeRI GACNNNNNGTC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 176
BpmI CTGGAG 2 cut(s) 138, 150
BsaJI CCNNGG 4 cut(s) 70, 161, 171, 273
Bse1I ACTGG 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 80
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 4 cut(s) 70, 161, 171, 273
BseGI GGATG 1 cut(s) 167
BseMI GCAATG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 121
BshFI GGCC 3 cut(s) 160, 176, 188
BslFI GGGAC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 3 cut(s) 160, 176, 188
BspACI CCGC 1 cut(s) 177
BspANI GGCC 3 cut(s) 160, 176, 188
BspQI GCTCTTC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 80
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 4 cut(s) 70, 161, 171, 273
BssT1I CCWWGG 3 cut(s) 70, 171, 273
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 26, 205
Bst6I CTCTTC 1 cut(s) 64
BstEII GGTNACC 1 cut(s) 26
BstF5I GGATG 1 cut(s) 167
BstMWI GCNNNNNNNGC 2 cut(s) 173, 185
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 37
BstPI GGTNACC 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 127
BsuRI GGCC 3 cut(s) 160, 176, 188
BtsCI GGATG 1 cut(s) 167
BtsIMutI CAGTG 1 cut(s) 210
CviAII CATG 2 cut(s) 34, 190
CviJI RGCY 8 cut(s) 49, 57, 124, 160, 176, 188, 252, 272
CviKI_1 RGCY 8 cut(s) 49, 57, 124, 160, 176, 188, 252, 272
DrdI GACNNNNNNGTC 1 cut(s) 151
DriI GACNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 64
Eam1105I GACNNNNNGTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 64
Eco130I CCWWGG 3 cut(s) 70, 171, 273
Eco91I GGTNACC 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 127
EcoT14I CCWWGG 3 cut(s) 70, 171, 273
ErhI CCWWGG 3 cut(s) 70, 171, 273
FaeI CATG 2 cut(s) 37, 193
FaiI YATR 8 cut(s) 35, 43, 182, 191, 211, 213, 236, 238
FaqI GGGAC 1 cut(s) 22
FatI CATG 2 cut(s) 33, 189
FauNDI CATATG 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 177
GsuI CTGGAG 2 cut(s) 138, 150
HaeIII GGCC 3 cut(s) 160, 176, 188
Hin1II CATG 2 cut(s) 37, 193
HinfI GANTC 1 cut(s) 132
HphI GGTGA 1 cut(s) 38
Hpy188I TCNGA 4 cut(s) 13, 67, 101, 144
Hpy99I CGWCG 2 cut(s) 26, 269
HpyAV CCTTC 2 cut(s) 212, 250
HpyCH4III ACNGT 2 cut(s) 26, 205
HpyCH4V TGCA 2 cut(s) 85, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 185
Hsp92II CATG 2 cut(s) 37, 193
LguI GCTCTTC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 4 cut(s) 102, 114, 141, 162
LweI GCATC 1 cut(s) 176
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 26, 199
MboII GAAGA 1 cut(s) 51
MluCI AATT 1 cut(s) 108
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 5 cut(s) 95, 113, 156, 178, 208
MspR9I CCNGG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 173, 185
NdeI CATATG 1 cut(s) 211
NlaIII CATG 2 cut(s) 37, 193
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 2 cut(s) 26, 199
NspI RCATGY 1 cut(s) 37
PciI ACATGT 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 64
PctI GAATGC 1 cut(s) 233
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PscI ACATGT 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 127
PspEI GGTNACC 1 cut(s) 26
PspGI CCWGG 1 cut(s) 127
SapI GCTCTTC 1 cut(s) 64
SatI GCNGC 1 cut(s) 177
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 129
SetI ASST 4 cut(s) 51, 130, 151, 261
SfaNI GCATC 1 cut(s) 176
Sse9I AATT 1 cut(s) 108
SsiI CCGC 1 cut(s) 177
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 3 cut(s) 70, 171, 273
TaaI ACNGT 2 cut(s) 26, 205
TasI AATT 1 cut(s) 108
TauI GCSGC 1 cut(s) 179
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 2 cut(s) 26, 199
Tsp45I GTSAC 2 cut(s) 26, 199
TspRI CASTG 1 cut(s) 210
XapI RAATTY 1 cut(s) 108
XceI RCATGY 1 cut(s) 37
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.