Rroxscaffold_2G00083190

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001784
Physical Location & Seq
Forward (+)
5887472 .. 5887936
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00083190.1

Sequence Viewer

Length: 387 bp
ATGTCCCACCAAAATCTAGTTCCTTCTGGCCCGCCCATCACAGTCATCCCTGCAGTACGCATCAATGTTCAATTTGAACTCGAACGTGCTAACATAGGTCGGAACAACAACCGTGGGCCGCTAGTGCTGCCGGCATCCAAGGCCTCCATAGACGCCATGGCGAAAGTGGAAGTCACGTCAGAGGCAGGGCCATCGGAGTGCAGTATCTGCTTGGAAGTCTTGAAGGTGGGGTGTGAAGCCAATGAGATGCCTAATTGTAAGCACAGGTGGGAAGATCAGGCCAACGGCTGGAATATCGATTACCAAGCTGATGATCGTAATAGCATGCAACTTGTAATAGCAGGCAAAATAGTCAAATTGTATCCTGACTTTTTTCATGTTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

128

Amino Acids

14.13

Weight (kDa)

5.55

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 288
AciI CCGC 2 cut(s) 32, 119
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 3 cut(s) 71, 77, 223
AjiI CACGTC 1 cut(s) 177
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 1 cut(s) 308
AluI AGCT 1 cut(s) 308
AlwNI CAGNNNCTG 1 cut(s) 207
AoxI GGCC 5 cut(s) 28, 116, 141, 188, 279
ApeKI GCWGC 1 cut(s) 127
AspS9I GGNCC 3 cut(s) 29, 116, 188
BbvI GCAGC 1 cut(s) 114
BccI CCATC 2 cut(s) 44, 199
BceAI ACGGC 1 cut(s) 301
BcgI CGANNNNNNTGC 2 cut(s) 174, 208
BciVI GTATCC 1 cut(s) 372
BfaI CTAG 2 cut(s) 17, 122
BfmI CTRYAG 1 cut(s) 51
BfuI GTATCC 1 cut(s) 372
BisI GCNGC 2 cut(s) 119, 128
BlsI GCNGC 2 cut(s) 120, 129
BmgBI CACGTC 1 cut(s) 177
BmgT120I GGNCC 3 cut(s) 29, 116, 188
BmsI GCATC 3 cut(s) 69, 143, 237
Bsa29I ATCGAT 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 112, 138, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse118I RCCGGY 1 cut(s) 130
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 3 cut(s) 112, 138, 156
BseGI GGATG 2 cut(s) 45, 134
BseLI CCNNNNNNNGG 1 cut(s) 288
BseXI GCAGC 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 220
BshFI GGCC 5 cut(s) 30, 118, 143, 190, 281
BshVI ATCGAT 1 cut(s) 297
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 288
BsnI GGCC 5 cut(s) 30, 118, 143, 190, 281
Bsp143I GATC 2 cut(s) 274, 313
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 2 cut(s) 32, 119
BspANI GGCC 5 cut(s) 30, 118, 143, 190, 281
BspDI ATCGAT 1 cut(s) 297
BspMAI CTGCAG 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 3 cut(s) 112, 138, 156
BssMI GATC 2 cut(s) 274, 313
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 2 cut(s) 138, 156
Bst4CI ACNGT 2 cut(s) 43, 113
BstACI GRCGYC 1 cut(s) 153
BstAPI GCANNNNNTGC 1 cut(s) 207
BstC8I GCNNGC 4 cut(s) 32, 132, 326, 343
BstDSI CCRYGG 2 cut(s) 112, 156
BstF5I GGATG 2 cut(s) 45, 134
BstKTI GATC 2 cut(s) 277, 316
BstMBI GATC 2 cut(s) 274, 313
BstMWI GCNNNNNNNGC 4 cut(s) 124, 127, 140, 207
BstNSI RCATGY 1 cut(s) 328
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 114
Bsu15I ATCGAT 1 cut(s) 297
BsuI GTATCC 1 cut(s) 372
BsuRI GGCC 5 cut(s) 30, 118, 143, 190, 281
BsuTUI ATCGAT 1 cut(s) 297
BtgI CCRYGG 2 cut(s) 112, 156
BtrI CACGTC 1 cut(s) 177
BtsCI GGATG 2 cut(s) 45, 134
Cac8I GCNNGC 4 cut(s) 32, 132, 326, 343
CaiI CAGNNNCTG 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 3 cut(s) 29, 116, 188
ClaI ATCGAT 1 cut(s) 297
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 56
CspCI CAANNNNNGTGG 2 cut(s) 94, 129
CviAII CATG 3 cut(s) 157, 325, 377
CviJI RGCY 8 cut(s) 30, 118, 143, 190, 239, 281, 288, 308
CviKI_1 RGCY 8 cut(s) 30, 118, 143, 190, 239, 281, 288, 308
CviQI GTAC 1 cut(s) 56
DpnI GATC 2 cut(s) 276, 315
DpnII GATC 2 cut(s) 274, 313
Eco130I CCWWGG 2 cut(s) 138, 156
Eco147I AGGCCT 1 cut(s) 143
EcoT14I CCWWGG 2 cut(s) 138, 156
ErhI CCWWGG 2 cut(s) 138, 156
FaeI CATG 3 cut(s) 160, 328, 380
FaiI YATR 5 cut(s) 95, 149, 158, 326, 378
FatI CATG 3 cut(s) 156, 324, 376
FauI CCCGC 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 119, 128
FokI GGATG 2 cut(s) 32, 121
Fsp4HI GCNGC 2 cut(s) 119, 128
FspBI CTAG 2 cut(s) 17, 122
GluI GCNGC 2 cut(s) 119, 128
HaeIII GGCC 5 cut(s) 30, 118, 143, 190, 281
HapII CCGG 1 cut(s) 131
HgaI GACGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 3 cut(s) 160, 328, 380
HpaII CCGG 1 cut(s) 131
Hpy188I TCNGA 3 cut(s) 102, 181, 196
Hpy188III TCNNGA 2 cut(s) 220, 365
HpyAV CCTTC 2 cut(s) 33, 217
HpyCH4III ACNGT 2 cut(s) 43, 113
HpyCH4IV ACGT 2 cut(s) 85, 176
HpyCH4V TGCA 3 cut(s) 53, 201, 328
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 127, 140, 207
HpySE526I ACGT 2 cut(s) 85, 176
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 3 cut(s) 160, 328, 380
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Kzo9I GATC 2 cut(s) 274, 313
LpnPI CCDG 9 cut(s) 12, 63, 144, 171, 250, 263, 274, 327, 378
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 3 cut(s) 69, 143, 237
MaeI CTAG 2 cut(s) 17, 122
MaeII ACGT 2 cut(s) 85, 176
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 276, 315
MboI GATC 2 cut(s) 274, 313
MboII GAAGA 1 cut(s) 284
MluCI AATT 3 cut(s) 71, 253, 356
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 2 cut(s) 154, 175
MroNI GCCGGC 1 cut(s) 130
MseI TTAA 1 cut(s) 385
MslI CAYNNNNRTG 1 cut(s) 196
MspI CCGG 1 cut(s) 131
MwoI GCNNNNNNNGC 4 cut(s) 124, 127, 140, 207
NaeI GCCGGC 1 cut(s) 132
NcoI CCATGG 1 cut(s) 156
NdeII GATC 2 cut(s) 274, 313
NgoMIV GCCGGC 1 cut(s) 130
NlaIII CATG 3 cut(s) 160, 328, 380
NmuCI GTSAC 1 cut(s) 172
NspI RCATGY 1 cut(s) 328
PaeI GCATGC 1 cut(s) 328
PceI AGGCCT 1 cut(s) 143
PdiI GCCGGC 1 cut(s) 132
PflMI CCANNNNNTGG 1 cut(s) 288
PkrI GCNGC 2 cut(s) 120, 129
PspPI GGNCC 3 cut(s) 29, 116, 188
PstI CTGCAG 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 207
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 196
SaqAI TTAA 1 cut(s) 385
SatI GCNGC 2 cut(s) 119, 128
Sau3AI GATC 2 cut(s) 274, 313
Sau96I GGNCC 3 cut(s) 29, 116, 188
SetI ASST 6 cut(s) 88, 100, 179, 228, 269, 310
SfaNI GCATC 3 cut(s) 69, 143, 237
SfcI CTRYAG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 196
SphI GCATGC 1 cut(s) 328
Sse9I AATT 3 cut(s) 71, 253, 356
SseBI AGGCCT 1 cut(s) 143
SsiI CCGC 2 cut(s) 32, 119
SspMI CTAG 2 cut(s) 17, 122
StuI AGGCCT 1 cut(s) 143
StyI CCWWGG 2 cut(s) 138, 156
TaaI ACNGT 2 cut(s) 43, 113
TaiI ACGT 2 cut(s) 88, 179
TaqI TCGA 2 cut(s) 81, 297
TasI AATT 3 cut(s) 71, 253, 356
TauI GCSGC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 385
Tru9I TTAA 1 cut(s) 385
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 365
Van91I CCANNNNNTGG 1 cut(s) 288
XceI RCATGY 1 cut(s) 328
XcmI CCANNNNNNNNNTGG 2 cut(s) 154, 163
XspI CTAG 2 cut(s) 17, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.