Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001784

Physical Location & Seq

Genomic Coordinates Reverse (-)

66290085 .. 66292354

Gene Structure 2270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0532500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCTGAACTCGAAACCCAGGTCCCATCTACTTTTGATCCCTTTGCTGACGCCAATGCTGAGGACTCGGGTGCCGGGACAAAAGAATACGTGCACGTGCGTGTACAGCAGCGTAACGGGAGGAAAAGCCTGACTACTGTGCAAGGATTGAAGAAGGAATACAGCTACAACAAGATACTTAAGGACCTCAAGAAGGAGTTCTGCTGTAATGGTACTGTTGTCCAGGATCCTGAGTTAGGCCAGGTTATACAACTTCAGGGGGACCAAAGAAAGAATGTTTCCTCCTTCCTTGTGCAGGCTGGCATTGTTAAGAAGGAGAATATTAAGCTTCACGGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033554 GO:0035966 GO:0035967 GO:0036211 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051716 GO:0051787 GO:0051788 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061635 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

113

Amino Acids

12.65

Weight (kDa)

8.55

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUI1	PF01253	28 - 102	1.2e-26	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14200
fragaria_vesca	FvH4_6g48331 FvH4_6g48340 FvH4_6g48360
malus_domestica	MD00G1131000.v1.1 MD09G1052200.v1.1 MD17G1031000.v1.1
prunus_persica	Prupe.3G288800_v2.0.a1
pyrus_communis	pycom111g04350 pycom17g02840 pycom17g04730
rosa_chinensis	RchiOBHm_Chr2g0168291 RchiOBHm_Chr2g0168301 RchiOBHm_Chr4g0388111
rosa_laevigata	RLG00000010079 RLG00000021486 RLG00000021487 RLG00000021762
rosa_multiflora	Rmu_sc0002180.1_g000027 Rmu_sc0002509.1_g000007 Rmu_sc0003354.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083170 Rroxscaffold_2G00083190 Rroxscaffold_2G00083200 Rroxscaffold_2G00083210 Rroxscaffold_3G00258810 Rroxscaffold_5G00334660
rosa_rugosa	Rorug02G0532500 Rorug03G0314900 Rorug07G0036900.1
rosa_samantha	Rh2AG601500 Rh2AG601600 Rh2AG601800 Rh2BG614800 Rh2BG615000 Rh2CG582300 Rh2CG582400 Rh2CG582600 Rh2DG625000 Rh2DG625200 Rh4AG020700 Rh4BG015000 Rh4CG021300 Rh4DG015700 Rh7BG163500
rosa_wichuraiana	Rw2G049940 Rw4G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AclWI	GGATC	3 cut(s)	32, 221, 234
AcuI	CTGAAG	1 cut(s)	239
AcvI	CACGTG	1 cut(s)	97
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	2 cut(s)	105, 214
AfiI	CCNNNNNNNGG	3 cut(s)	193, 236, 295
AflII	CTTAAG	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	3 cut(s)	18, 222, 240
AleI	CACNNNNGTG	1 cut(s)	99
AluBI	AGCT	2 cut(s)	165, 328
AluI	AGCT	2 cut(s)	165, 328
Alw21I	GWGCWC	1 cut(s)	96
Alw44I	GTGCAC	1 cut(s)	92
AlwI	GGATC	3 cut(s)	32, 221, 234
Ama87I	CYCGRG	1 cut(s)	67
AoxI	GGCC	1 cut(s)	238
ApaLI	GTGCAC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	109
ArsI	GACNNNNNNTTYG	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	3 cut(s)	22, 184, 262
AsuC2I	CCSGG	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	67
AvaII	GGWCC	3 cut(s)	22, 184, 262
BaeGI	GKGCMC	1 cut(s)	96
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BamHI	GGATCC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	71
BarI	GAAGNNNNNNTAC	2 cut(s)	143, 175
BbrPI	CACGTG	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	3 cut(s)	20, 224, 242
BcnI	CCSGG	1 cut(s)	76
BfrI	CTTAAG	1 cut(s)	179
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
Bme1390I	CCNGG	4 cut(s)	20, 76, 224, 242
Bme18I	GGWCC	3 cut(s)	22, 184, 262
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	3 cut(s)	22, 184, 262
BmiI	GGNNCC	4 cut(s)	24, 73, 228, 263
BmrFI	CCNGG	4 cut(s)	20, 76, 224, 242
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	76
BsaAI	YACGTR	2 cut(s)	91, 97
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 236, 295
BseBI	CCWGG	3 cut(s)	20, 224, 242
BseDI	CCNNGG	1 cut(s)	18
BseLI	CCNNNNNNNGG	3 cut(s)	193, 236, 295
BseMII	CTCAG	2 cut(s)	51, 222
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	314
BshFI	GGCC	1 cut(s)	240
BshNI	GGYRCC	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	3 cut(s)	8, 91, 275
BslI	CCNNNNNNNGG	3 cut(s)	193, 236, 295
BsmFI	GGGAC	3 cut(s)	8, 91, 275
BsnI	GGCC	1 cut(s)	240
BsoBI	CYCGRG	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp1407I	TGTACA	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	37, 226
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	2 cut(s)	52, 223
BspLI	GGNNCC	4 cut(s)	24, 73, 228, 263
BspPI	GGATC	3 cut(s)	32, 221, 234
BspT107I	GGYRCC	1 cut(s)	71
BspTI	CTTAAG	1 cut(s)	179
BsrGI	TGTACA	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	37, 226
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	3 cut(s)	20, 224, 242
Bst4CI	ACNGT	3 cut(s)	139, 217, 335
BstACI	GRCGYC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	179
BstAUI	TGTACA	1 cut(s)	103
BstBAI	YACGTR	2 cut(s)	91, 97
BstC8I	GCNNGC	2 cut(s)	297, 301
BstDEI	CTNAG	2 cut(s)	60, 231
BstENI	CCTNNNNNAGG	3 cut(s)	191, 234, 293
BstKTI	GATC	2 cut(s)	40, 229
BstMBI	GATC	2 cut(s)	37, 226
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	3 cut(s)	20, 224, 242
BstSCI	CCNGG	4 cut(s)	18, 74, 222, 240
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	297, 301
Cfr13I	GGNCC	3 cut(s)	22, 184, 262
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	104, 213
CviJI	RGCY	5 cut(s)	129, 165, 240, 299, 328
CviKI_1	RGCY	5 cut(s)	129, 165, 240, 299, 328
CviQI	GTAC	2 cut(s)	104, 213
DdeI	CTNAG	2 cut(s)	60, 231
DpnI	GATC	2 cut(s)	39, 228
DpnII	GATC	2 cut(s)	37, 226
Eco47I	GGWCC	3 cut(s)	22, 184, 262
Eco57I	CTGAAG	1 cut(s)	239
Eco72I	CACGTG	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	67
EcoNI	CCTNNNNNAGG	3 cut(s)	191, 234, 293
EcoO109I	RGGNCCY	2 cut(s)	22, 184
EcoRII	CCWGG	3 cut(s)	18, 222, 240
FaiI	YATR	1 cut(s)	248
FaqI	GGGAC	3 cut(s)	8, 91, 275
Fnu4HI	GCNGC	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	110
GluI	GCNGC	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	75
Hpy166II	GTNNAC	2 cut(s)	94, 104
Hpy188I	TCNGA	2 cut(s)	7, 341
Hpy188III	TCNNGA	2 cut(s)	190, 230
Hpy8I	GTNNAC	2 cut(s)	94, 104
HpyAV	CCTTC	4 cut(s)	148, 187, 295, 307
HpyCH4III	ACNGT	3 cut(s)	139, 217, 335
HpyCH4IV	ACGT	2 cut(s)	90, 96
HpyCH4V	TGCA	3 cut(s)	94, 142, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	2 cut(s)	60, 231
HpySE526I	ACGT	2 cut(s)	90, 96
Hsp92I	GRCGYC	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	37, 226
Lsp1109I	GCAGC	1 cut(s)	121
MaeII	ACGT	2 cut(s)	90, 96
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	2 cut(s)	39, 228
MboI	GATC	2 cut(s)	37, 226
MboII	GAAGA	1 cut(s)	163
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	4 cut(s)	55, 114, 197, 292
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	3 cut(s)	180, 309, 324
MslI	CAYNNNNRTG	1 cut(s)	99
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	4 cut(s)	20, 76, 224, 242
MvaI	CCWGG	3 cut(s)	20, 224, 242
MwoI	GCNNNNNNNGC	1 cut(s)	106
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	2 cut(s)	37, 226
NlaIV	GGNNCC	4 cut(s)	24, 73, 228, 263
OliI	CACNNNNGTG	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	197
PfoI	TCCNGGA	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	111
PleI	GAGTC	1 cut(s)	59
PmaCI	CACGTG	1 cut(s)	97
PmlI	CACGTG	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	2 cut(s)	91, 97
PpuMI	RGGWCCY	2 cut(s)	22, 184
Psp5II	RGGWCCY	2 cut(s)	22, 184
Psp6I	CCWGG	3 cut(s)	18, 222, 240
PspCI	CACGTG	1 cut(s)	97
PspGI	CCWGG	3 cut(s)	18, 222, 240
PspN4I	GGNNCC	4 cut(s)	24, 73, 228, 263
PspPI	GGNCC	3 cut(s)	22, 184, 262
PspPPI	RGGWCCY	2 cut(s)	22, 184
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	2 cut(s)	105, 214
RsaNI	GTAC	2 cut(s)	104, 213
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	180, 309, 324
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	2 cut(s)	37, 226
Sau96I	GGNCC	3 cut(s)	22, 184, 262
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	4 cut(s)	20, 76, 224, 242
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	7 cut(s)	24, 93, 99, 167, 189, 246, 330
SinI	GGWCC	3 cut(s)	22, 184, 262
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	179, 188
SmoI	CTYRAG	2 cut(s)	179, 188
SspI	AATATT	1 cut(s)	322
StyD4I	CCNGG	4 cut(s)	18, 74, 222, 240
TaaI	ACNGT	3 cut(s)	139, 217, 335
TaiI	ACGT	2 cut(s)	93, 99
TaqI	TCGA	1 cut(s)	12
TatI	WGTACW	1 cut(s)	103
Tru1I	TTAA	3 cut(s)	180, 309, 324
Tru9I	TTAA	3 cut(s)	180, 309, 324
TseI	GCWGC	1 cut(s)	109
Vha464I	CTTAAG	1 cut(s)	179
VneI	GTGCAC	1 cut(s)	92
VpaK11BI	GGWCC	3 cut(s)	22, 184, 262
XagI	CCTNNNNNAGG	3 cut(s)	191, 234, 293
XmnI	GAANNNNTTC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.