pycom17g02840

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001784
Physical Location & Seq
Forward (+)
1884931 .. 1885395
465 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g02840.1

Sequence Viewer

Length: 414 bp
ATGAGCGACGGTGACGAGGAAGCACCGTTCGATCCAATGATCCCACTTCATCTCCGTCGTTTGCAGATGGAGGTAGCACGACGGCACATAAGGCGCTATTTAGAAGCAAGAGACGACAATCTCATCCATGCCAATATCAATTATTTCAACCATAACATTGGCAATCGTTTTCGTCAGCCGTCGTCTGCTGCGGTGGCGGCATCCAAGGCGTCCATAGACGCCATGCCGAGAGTGACGGTCACGGTGGTAGGCGCCGACTGCGCCATCTGCATGGGGGACTTGGAGATCGGCGGTGAAGCCAGAGAAATGCCTTGTAAGCACAGGTTTCACTCGCCTTGTATCGAAGCGTGGCTGTGCCGGCGAGCGTCCTGCCCGCTTTGCAGGTTCTCTGTTCCCAAGGAAGAACACCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

138

Amino Acids

15.55

Weight (kDa)

7.07

Isoelectric Point (pI)

77.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 86 - 128 1.5e-12 Ring finger domain
zf-RING_11 PF17123 86 - 114 7.8e-11 RING-like zinc finger
zf-C3HC4_2 PF13923 87 - 127 6.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 87 - 127 9.3e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 251
AciI CCGC 4 cut(s) 191, 197, 291, 374
AclWI GGATC 2 cut(s) 26, 34
AcyI GRCGYC 3 cut(s) 209, 219, 252
AgsI TTSAA 1 cut(s) 148
AloI GAACNNNNNNTCC 2 cut(s) 11, 43
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 2 cut(s) 26, 34
ApeKI GCWGC 1 cut(s) 188
AspLEI GCGC 3 cut(s) 96, 254, 263
AsuHPI GGTGA 2 cut(s) 23, 305
BanI GGYRCC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 175
BccI CCATC 2 cut(s) 61, 272
BceAI ACGGC 2 cut(s) 98, 163
BcgI CGANNNNNNTGC 2 cut(s) 351, 385
BcoDI GTCTC 1 cut(s) 105
BfoI RGCGCY 2 cut(s) 97, 255
BfuAI ACCTGC 1 cut(s) 372
BisI GCNGC 2 cut(s) 189, 198
BlsI GCNGC 2 cut(s) 190, 199
BmiI GGNNCC 1 cut(s) 253
BmsI GCATC 1 cut(s) 209
BsaHI GRCGYC 3 cut(s) 209, 219, 252
BsaJI CCNNGG 2 cut(s) 204, 396
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bse118I RCCGGY 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 204, 396
BseGI GGATG 2 cut(s) 123, 200
BseXI GCAGC 1 cut(s) 175
BshNI GGYRCC 1 cut(s) 251
BsiSI CCGG 1 cut(s) 358
BslFI GGGAC 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 105
BsmBI CGTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 290
Bsp143I GATC 3 cut(s) 31, 39, 285
BspACI CCGC 4 cut(s) 191, 197, 291, 374
BspLI GGNNCC 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 372
BspPI GGATC 2 cut(s) 26, 34
BspT107I GGYRCC 1 cut(s) 251
BsrFI RCCGGY 1 cut(s) 357
BssAI RCCGGY 1 cut(s) 357
BssECI CCNNGG 2 cut(s) 204, 396
BssMI GATC 3 cut(s) 31, 39, 285
BssNI GRCGYC 3 cut(s) 209, 219, 252
BssT1I CCWWGG 2 cut(s) 204, 396
Bst4CI ACNGT 4 cut(s) 11, 27, 238, 244
BstACI GRCGYC 3 cut(s) 209, 219, 252
BstC8I GCNNGC 3 cut(s) 359, 363, 374
BstF5I GGATG 2 cut(s) 123, 200
BstH2I RGCGCY 2 cut(s) 97, 255
BstHHI GCGC 3 cut(s) 96, 254, 263
BstKTI GATC 3 cut(s) 34, 42, 288
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 3 cut(s) 31, 39, 285
BstV1I GCAGC 1 cut(s) 175
BstXI CCANNNNNNTGG 2 cut(s) 158, 271
BtsCI GGATG 2 cut(s) 123, 200
BveI ACCTGC 1 cut(s) 372
Cac8I GCNNGC 3 cut(s) 359, 363, 374
CfoI GCGC 3 cut(s) 96, 254, 263
Cfr10I RCCGGY 1 cut(s) 357
CseI GACGC 3 cut(s) 198, 227, 354
CviAII CATG 3 cut(s) 128, 223, 271
CviJI RGCY 3 cut(s) 178, 299, 352
CviKI_1 RGCY 3 cut(s) 178, 299, 352
DinI GGCGCC 1 cut(s) 253
DpnI GATC 3 cut(s) 33, 41, 287
DpnII GATC 3 cut(s) 31, 39, 285
Eco130I CCWWGG 2 cut(s) 204, 396
EcoT14I CCWWGG 2 cut(s) 204, 396
EgeI GGCGCC 1 cut(s) 253
EheI GGCGCC 1 cut(s) 253
ErhI CCWWGG 2 cut(s) 204, 396
Esp3I CGTCTC 1 cut(s) 105
FaeI CATG 3 cut(s) 131, 226, 274
FaiI YATR 6 cut(s) 89, 129, 153, 215, 224, 272
FaqI GGGAC 1 cut(s) 290
FatI CATG 3 cut(s) 127, 222, 270
FauI CCCGC 1 cut(s) 381
Fnu4HI GCNGC 2 cut(s) 189, 198
FokI GGATG 2 cut(s) 110, 187
Fsp4HI GCNGC 2 cut(s) 189, 198
GlaI GCGC 3 cut(s) 95, 253, 262
GluI GCNGC 2 cut(s) 189, 198
HaeII RGCGCY 2 cut(s) 97, 255
HapII CCGG 1 cut(s) 358
HgaI GACGC 3 cut(s) 198, 227, 354
HhaI GCGC 3 cut(s) 96, 254, 263
Hin1I GRCGYC 3 cut(s) 209, 219, 252
Hin1II CATG 3 cut(s) 131, 226, 274
Hin6I GCGC 3 cut(s) 94, 252, 261
HinP1I GCGC 3 cut(s) 94, 252, 261
HpaII CCGG 1 cut(s) 358
HphI GGTGA 2 cut(s) 23, 305
Hpy99I CGWCG 4 cut(s) 11, 60, 84, 184
HpyCH4III ACNGT 4 cut(s) 11, 27, 238, 244
HpyCH4V TGCA 3 cut(s) 64, 270, 381
Hsp92I GRCGYC 3 cut(s) 209, 219, 252
Hsp92II CATG 3 cut(s) 131, 226, 274
HspAI GCGC 3 cut(s) 94, 252, 261
KasI GGCGCC 1 cut(s) 251
KroI GCCGGC 1 cut(s) 357
KroNI GCCGGC 1 cut(s) 359
Kzo9I GATC 3 cut(s) 31, 39, 285
LpnPI CCDG 5 cut(s) 307, 313, 367, 371, 382
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 209
MaeIII GTNAC 3 cut(s) 11, 232, 238
MalI GATC 3 cut(s) 33, 41, 287
MboI GATC 3 cut(s) 31, 39, 285
MboII GAAGA 1 cut(s) 413
MluCI AATT 1 cut(s) 139
Mly113I GGCGCC 1 cut(s) 252
MnlI CCTC 2 cut(s) 10, 64
MroNI GCCGGC 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 269
MspI CCGG 1 cut(s) 358
NaeI GCCGGC 1 cut(s) 359
NarI GGCGCC 1 cut(s) 252
NdeII GATC 3 cut(s) 31, 39, 285
NgoMIV GCCGGC 1 cut(s) 357
NlaIII CATG 3 cut(s) 131, 226, 274
NlaIV GGNNCC 1 cut(s) 253
NmeAIII GCCGAG 1 cut(s) 252
NmuCI GTSAC 3 cut(s) 11, 232, 238
PdiI GCCGGC 1 cut(s) 359
PkrI GCNGC 2 cut(s) 190, 199
PluTI GGCGCC 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 269
SatI GCNGC 2 cut(s) 189, 198
Sau3AI GATC 3 cut(s) 31, 39, 285
SetI ASST 3 cut(s) 75, 326, 386
SfaNI GCATC 1 cut(s) 209
SfoI GGCGCC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 269
Sse9I AATT 1 cut(s) 139
SsiI CCGC 4 cut(s) 191, 197, 291, 374
SspDI GGCGCC 1 cut(s) 251
StyI CCWWGG 2 cut(s) 204, 396
TaaI ACNGT 4 cut(s) 11, 27, 238, 244
TaqI TCGA 2 cut(s) 30, 342
TasI AATT 1 cut(s) 139
TauI GCSGC 1 cut(s) 200
TseFI GTSAC 3 cut(s) 11, 232, 238
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 3 cut(s) 11, 232, 238
TspDTI ATGAA 1 cut(s) 38
TspGWI ACGGA 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.