Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003354.1

Orthogroup ID

OG0001784

Physical Location & Seq

Genomic Coordinates Reverse (-)

38093 .. 38533

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003354.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgtctgacttttccaacccacgtactagtgatcaaatgataggggaaactcccgtactcgccttacctacaccagccattgacgtcagtgcatcaaggcaacaattacttgctttaattgattttgtattcgctgatcagcctaccgtggtggtgggagcatcaaaggcatccatagaagacatgccgagggtgatagtcaccgacgaaggaatggagtgcagtatatgtttggaaagcttcaaagtctgcggtgaagccaaggagatgccttgtaagcacaggtttcacgcgcactgtattgaaaactggctgtacaggcgtgcttcctgcccactttgcaggttcaccgtgcccgttgacttggaagaagagacgaatggcatgagcgaacattggattgatatcacagattttttggattttagggatatggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

146

Amino Acids

16.46

Weight (kDa)

4.53

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14200
fragaria_vesca	FvH4_6g48331 FvH4_6g48340 FvH4_6g48360
malus_domestica	MD00G1131000.v1.1 MD09G1052200.v1.1 MD17G1031000.v1.1
prunus_persica	Prupe.3G288800_v2.0.a1
pyrus_communis	pycom111g04350 pycom17g02840 pycom17g04730
rosa_chinensis	RchiOBHm_Chr2g0168291 RchiOBHm_Chr2g0168301 RchiOBHm_Chr4g0388111
rosa_laevigata	RLG00000010079 RLG00000021486 RLG00000021487 RLG00000021762
rosa_multiflora	Rmu_sc0002180.1_g000027 Rmu_sc0002509.1_g000007 Rmu_sc0003354.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083170 Rroxscaffold_2G00083190 Rroxscaffold_2G00083200 Rroxscaffold_2G00083210 Rroxscaffold_3G00258810 Rroxscaffold_5G00334660
rosa_rugosa	Rorug02G0532500 Rorug03G0314900 Rorug07G0036900.1
rosa_samantha	Rh2AG601500 Rh2AG601600 Rh2AG601800 Rh2BG614800 Rh2BG615000 Rh2CG582300 Rh2CG582400 Rh2CG582600 Rh2DG625000 Rh2DG625200 Rh4AG020700 Rh4BG015000 Rh4CG021300 Rh4DG015700 Rh7BG163500
rosa_wichuraiana	Rw2G049940 Rw4G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
Acc36I	ACCTGC	1 cut(s)	333
AccII	CGCG	1 cut(s)	293
AciI	CCGC	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	3 cut(s)	25, 57, 317
AgsI	TTSAA	2 cut(s)	244, 305
AhlI	ACTAGT	1 cut(s)	26
AluBI	AGCT	1 cut(s)	240
AluI	AGCT	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	295
AsuHPI	GGTGA	4 cut(s)	193, 205, 266, 340
BaeGI	GKGCMC	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	186
BclI	TGATCA	2 cut(s)	31, 136
BcoDI	GTCTC	1 cut(s)	368
BcuI	ACTAGT	1 cut(s)	26
BfaI	CTAG	1 cut(s)	27
BfuAI	ACCTGC	1 cut(s)	333
BmsI	GCATC	4 cut(s)	101, 170, 179, 258
BpiI	GAAGAC	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	23
BsaBI	GATNNNNATC	1 cut(s)	404
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	147, 188, 261
Bse1I	ACTGG	1 cut(s)	314
Bse8I	GATNNNNATC	1 cut(s)	404
BseDI	CCNNGG	3 cut(s)	147, 188, 261
BseGI	GGATG	1 cut(s)	170
BseJI	GATNNNNATC	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	357
BsgI	GTGCAG	1 cut(s)	241
Bsh1236I	CGCG	1 cut(s)	293
BsmAI	GTCTC	1 cut(s)	368
BsmBI	CGTCTC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	31, 136
BspACI	CCGC	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	293
BspMI	ACCTGC	1 cut(s)	333
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	3 cut(s)	147, 188, 261
BssMI	GATC	2 cut(s)	31, 136
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	261
Bst4CI	ACNGT	3 cut(s)	148, 299, 352
Bst6I	CTCTTC	1 cut(s)	366
BstACI	GRCGYC	1 cut(s)	84
BstAUI	TGTACA	1 cut(s)	315
BstBAI	YACGTR	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	170
BstFNI	CGCG	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	2 cut(s)	34, 139
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	2 cut(s)	31, 136
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 277, 319, 339
BstNSI	RCATGY	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	357
BstUI	CGCG	1 cut(s)	293
BstV2I	GAAGAC	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	170
BtsIMutI	CAGTG	2 cut(s)	94, 295
BveI	ACCTGC	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	324
CfoI	GCGC	1 cut(s)	295
Csp6I	GTAC	3 cut(s)	24, 56, 316
CviAII	CATG	2 cut(s)	184, 385
CviJI	RGCY	5 cut(s)	77, 142, 240, 260, 313
CviKI_1	RGCY	5 cut(s)	77, 142, 240, 260, 313
CviQI	GTAC	3 cut(s)	24, 56, 316
DpnI	GATC	2 cut(s)	33, 138
DpnII	GATC	2 cut(s)	31, 136
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	261
Eco32I	GATATC	1 cut(s)	406
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	368
FaeI	CATG	2 cut(s)	187, 388
FaiI	YATR	6 cut(s)	176, 185, 227, 229, 386, 434
FatI	CATG	2 cut(s)	183, 384
FbaI	TGATCA	2 cut(s)	31, 136
FokI	GGATG	1 cut(s)	157
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	1 cut(s)	294
HhaI	GCGC	1 cut(s)	295
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	187, 388
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	238
HphI	GGTGA	4 cut(s)	193, 205, 266, 340
Hpy166II	GTNNAC	2 cut(s)	348, 361
Hpy188I	TCNGA	1 cut(s)	7
Hpy8I	GTNNAC	2 cut(s)	348, 361
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	3 cut(s)	148, 299, 352
HpyCH4IV	ACGT	2 cut(s)	22, 84
HpyCH4V	TGCA	3 cut(s)	92, 222, 342
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 277, 319, 339
HpySE526I	ACGT	2 cut(s)	22, 84
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	187, 388
HspAI	GCGC	1 cut(s)	293
Ksp22I	TGATCA	2 cut(s)	31, 136
Kzo9I	GATC	2 cut(s)	31, 136
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	6 cut(s)	87, 268, 295, 304, 328, 343
LweI	GCATC	4 cut(s)	101, 170, 179, 258
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	2 cut(s)	22, 84
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	33, 138
MboI	GATC	2 cut(s)	31, 136
MboII	GAAGA	3 cut(s)	191, 380, 383
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	2 cut(s)	104, 117
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	1 cut(s)	183
MseI	TTAA	1 cut(s)	116
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	4 cut(s)	167, 277, 319, 339
NdeII	GATC	2 cut(s)	31, 136
NlaIII	CATG	2 cut(s)	187, 388
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	187
Ppu21I	YACGTR	1 cut(s)	23
RsaI	GTAC	3 cut(s)	25, 57, 317
RsaNI	GTAC	3 cut(s)	24, 56, 316
SaqAI	TTAA	1 cut(s)	116
Sau3AI	GATC	2 cut(s)	31, 136
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	6 cut(s)	25, 70, 87, 242, 287, 347
SfaNI	GCATC	4 cut(s)	101, 170, 179, 258
SpeI	ACTAGT	1 cut(s)	26
Sse9I	AATT	2 cut(s)	104, 117
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	3 cut(s)	148, 299, 352
TaiI	ACGT	2 cut(s)	25, 87
TasI	AATT	2 cut(s)	104, 117
TatI	WGTACW	1 cut(s)	315
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	2 cut(s)	94, 302
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspRI	CASTG	2 cut(s)	94, 302
XceI	RCATGY	1 cut(s)	187
XspI	CTAG	1 cut(s)	27
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.