Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001784

Physical Location & Seq

Genomic Coordinates Reverse (-)

83007351 .. 83007920

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG601500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGTCATCATTTCCCAGTCAATCTCTTCCGTCACAGAAGAAGGGACGACGGAATATGACGATCATTGCACTATTTGCTTGGAAGACTTGATTTCCAAGGTGAGGGAGATGCCTTGTAAGCATAGGTTTCACTCGCCTTGTATCGAGTCTTGGCTGCTCAGAAGTGAATCCTGCCCTCTTTGCAGGAGGCCGTTTCTGAGTGGCAGCAATCTCAGTCGTAGACTTTGGCGATTAGTAAATGCATATTTTGCTAATGTTTTCATTGTTTTTTGTTGGATTACAGGTTGGTTGTGTGCATGGTTGATTTATTTGAATCTAGCTATTTGCCCAGTAATCTCCTCTGTTTGCCCTCTTTACCCCTTTGAAAAAGCGACTTGGATCATCTCCTCCTTGTTTTTAGTTGTCATTGTCTTCCTTGTGACCATTCACCCATGTCCTGATGATCGCCGTGGCGATCAGGTGATCGATGAACTTGAAGGAAACTTGAGAACCCAGTCACGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

168

Amino Acids

19.36

Weight (kDa)

6.06

Isoelectric Point (pI)

70.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	18 - 62	7.8e-08	RING-H2 zinc finger domain
zf-C3HC4_3	PF13920	20 - 65	4.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	22 - 62	6e-12	Ring finger domain
zf-C3HC4	PF00097	23 - 61	6.9e-11	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	23 - 61	8.5e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	23 - 48	5.3e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14200
fragaria_vesca	FvH4_6g48331 FvH4_6g48340 FvH4_6g48360
malus_domestica	MD00G1131000.v1.1 MD09G1052200.v1.1 MD17G1031000.v1.1
prunus_persica	Prupe.3G288800_v2.0.a1
pyrus_communis	pycom111g04350 pycom17g02840 pycom17g04730
rosa_chinensis	RchiOBHm_Chr2g0168291 RchiOBHm_Chr2g0168301 RchiOBHm_Chr4g0388111
rosa_laevigata	RLG00000010079 RLG00000021486 RLG00000021487 RLG00000021762
rosa_multiflora	Rmu_sc0002180.1_g000027 Rmu_sc0002509.1_g000007 Rmu_sc0003354.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083170 Rroxscaffold_2G00083190 Rroxscaffold_2G00083200 Rroxscaffold_2G00083210 Rroxscaffold_3G00258810 Rroxscaffold_5G00334660
rosa_rugosa	Rorug02G0532500 Rorug03G0314900 Rorug07G0036900.1
rosa_samantha	Rh2AG601500 Rh2AG601600 Rh2AG601800 Rh2BG614800 Rh2BG615000 Rh2CG582300 Rh2CG582400 Rh2CG582600 Rh2DG625000 Rh2DG625200 Rh4AG020700 Rh4BG015000 Rh4CG021300 Rh4DG015700 Rh7BG163500
rosa_wichuraiana	Rw2G049940 Rw4G001380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	220
AclWI	GGATC	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	3 cut(s)	313, 365, 476
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
AlwI	GGATC	1 cut(s)	386
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	2 cut(s)	154, 204
AsuHPI	GGTGA	3 cut(s)	112, 419, 472
BbsI	GAAGAC	2 cut(s)	90, 403
BbvI	GCAGC	2 cut(s)	141, 216
BceAI	ACGGC	2 cut(s)	175, 432
BfaI	CTAG	1 cut(s)	317
BisI	GCNGC	2 cut(s)	155, 205
BlsI	GCNGC	2 cut(s)	156, 206
BmrI	ACTGGG	3 cut(s)	10, 323, 487
BmsI	GCATC	1 cut(s)	99
BmuI	ACTGGG	3 cut(s)	10, 323, 487
BpiI	GAAGAC	2 cut(s)	90, 403
BpuEI	CTTGAG	1 cut(s)	505
Bsa29I	ATCGAT	1 cut(s)	465
BsaJI	CCNNGG	2 cut(s)	96, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse1I	ACTGG	3 cut(s)	16, 329, 493
Bse3DI	GCAATG	1 cut(s)	64
BseCI	ATCGAT	1 cut(s)	465
BseDI	CCNNGG	2 cut(s)	96, 448
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	3 cut(s)	172, 188, 226
BseNI	ACTGG	3 cut(s)	16, 329, 493
BseRI	GAGGAG	2 cut(s)	328, 376
BseXI	GCAGC	2 cut(s)	141, 216
BshFI	GGCC	1 cut(s)	190
BshVI	ATCGAT	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	190
Bsp143I	GATC	6 cut(s)	61, 378, 442, 454, 462, 500
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	3 cut(s)	171, 189, 225
BspDI	ATCGAT	1 cut(s)	465
BspHI	TCATGA	1 cut(s)	503
BspPI	GGATC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	64
BsrI	ACTGG	3 cut(s)	16, 329, 493
BssECI	CCNNGG	2 cut(s)	96, 448
BssMI	GATC	6 cut(s)	61, 378, 442, 454, 462, 500
BssT1I	CCWWGG	1 cut(s)	96
Bst6I	CTCTTC	1 cut(s)	31
BstAPI	GCANNNNNTGC	2 cut(s)	75, 248
BstDEI	CTNAG	3 cut(s)	158, 197, 212
BstDSI	CCRYGG	1 cut(s)	448
BstKTI	GATC	6 cut(s)	64, 381, 445, 457, 465, 503
BstMBI	GATC	6 cut(s)	61, 378, 442, 454, 462, 500
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 118, 180, 248
BstV1I	GCAGC	2 cut(s)	141, 216
BstV2I	GAAGAC	2 cut(s)	90, 403
Bsu15I	ATCGAT	1 cut(s)	465
BsuRI	GGCC	1 cut(s)	190
BsuTUI	ATCGAT	1 cut(s)	465
BtgI	CCRYGG	1 cut(s)	448
CciI	TCATGA	1 cut(s)	503
ClaI	ATCGAT	1 cut(s)	465
CviAII	CATG	3 cut(s)	297, 432, 504
CviJI	RGCY	3 cut(s)	154, 190, 320
CviKI_1	RGCY	3 cut(s)	154, 190, 320
DdeI	CTNAG	3 cut(s)	158, 197, 212
DpnI	GATC	6 cut(s)	63, 380, 444, 456, 464, 502
DpnII	GATC	6 cut(s)	61, 378, 442, 454, 462, 500
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	96
EcoT22I	ATGCAT	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	3 cut(s)	300, 435, 507
FaiI	YATR	6 cut(s)	57, 123, 244, 298, 433, 505
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	3 cut(s)	296, 431, 503
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	155, 205
Fsp4HI	GCNGC	2 cut(s)	155, 205
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	2 cut(s)	155, 205
HaeIII	GGCC	1 cut(s)	190
Hin1II	CATG	3 cut(s)	300, 435, 507
HinfI	GANTC	3 cut(s)	146, 167, 313
HphI	GGTGA	3 cut(s)	112, 419, 472
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	2 cut(s)	161, 198
Hpy188III	TCNNGA	3 cut(s)	437, 498, 504
Hpy8I	GTNNAC	1 cut(s)	221
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	35, 470
HpyCH4V	TGCA	4 cut(s)	69, 183, 242, 296
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 118, 180, 248
HpyF3I	CTNAG	3 cut(s)	158, 197, 212
Hsp92II	CATG	3 cut(s)	300, 435, 507
Kzo9I	GATC	6 cut(s)	61, 378, 442, 454, 462, 500
LpnPI	CCDG	7 cut(s)	29, 169, 184, 267, 342, 443, 450
Lsp1109I	GCAGC	2 cut(s)	141, 216
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	3 cut(s)	31, 418, 495
MalI	GATC	6 cut(s)	63, 380, 444, 456, 464, 502
MboI	GATC	6 cut(s)	61, 378, 442, 454, 462, 500
MboII	GAAGA	4 cut(s)	18, 50, 95, 403
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	6 cut(s)	96, 180, 186, 349, 360, 397
Mph1103I	ATGCAT	1 cut(s)	244
MslI	CAYNNNNRTG	1 cut(s)	502
MwoI	GCNNNNNNNGC	4 cut(s)	75, 118, 180, 248
NdeII	GATC	6 cut(s)	61, 378, 442, 454, 462, 500
NlaIII	CATG	3 cut(s)	300, 435, 507
NmuCI	GTSAC	3 cut(s)	31, 418, 495
NsiI	ATGCAT	1 cut(s)	244
PagI	TCATGA	1 cut(s)	503
PfeI	GAWTC	2 cut(s)	167, 313
PkrI	GCNGC	2 cut(s)	156, 206
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	502
SatI	GCNGC	2 cut(s)	155, 205
Sau3AI	GATC	6 cut(s)	61, 378, 442, 454, 462, 500
SchI	GAGTC	1 cut(s)	155
SetI	ASST	5 cut(s)	102, 128, 286, 322, 462
SfaNI	GCATC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	484
SmoI	CTYRAG	1 cut(s)	484
SspMI	CTAG	1 cut(s)	317
StyI	CCWWGG	1 cut(s)	96
TaqI	TCGA	2 cut(s)	144, 465
TfiI	GAWTC	2 cut(s)	167, 313
TseFI	GTSAC	3 cut(s)	31, 418, 495
TseI	GCWGC	2 cut(s)	154, 204
Tsp45I	GTSAC	3 cut(s)	31, 418, 495
TspDTI	ATGAA	2 cut(s)	250, 483
TspGWI	ACGGA	2 cut(s)	19, 65
XmiI	GTMKAC	1 cut(s)	220
XspI	CTAG	1 cut(s)	317
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.