AT1G21560

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000931
Physical Location & Seq
Forward (+)
7554671 .. 7557112
2442 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21560.2

Sequence Viewer

Length: 978 bp
ATGGATTATCAGTATATAAAGTTGTTGGATAGTTTCAGAGAAGATGGAAGTTTAAATCTGAGTGACAATCCACTAAGGTCTATTAGGTATGAAGTAGATAATGGTGGATATGACAAGCGGGAGTTTAAAGCAGTGTTTACAAATAAGCGGAGTAGAGAAGATCGAAACACTATTCGTGTAACCAAGAAGAATGTTGAGCCAAAGCCTCCTCATGTTCAAGCAAGTACAGAGAAGGTAACAAAAGAAGCCGGTTTCAAATTAAGGCGAAGAGAGAGTCTTGTGAGTCAGAAGAGTGTTGAAGCAATGCTTATTACAAGTCATGTGAGAAGAAACTCCCAACACAATAATGGCGACGCTAGCGAGAAGGAGAATTTTGAGGATGACATTGTATTGGATGAGGTTTACAGATCTTATCTCAAACGGTTAGTGGAAAATTCGAAAAGTTCAAGAACTAATCCTGAAAAAGAGATAAAAGTAAAGTGTGAGGAGGATCATACAGTGTCTTTGTCTGATTCTGATTCTGATATTATTGTGGTTGGAGATTGTCCGTTTCTGGAAGAAGAGGATTCTCCATTTGTGCCATCAAAAAGTTATAAAGTGATTGATTTGGATGAAGAGAGCAGTGATCAACGCAATTCTTGGTTTAGGAGGGAGATAATGAATGTTCTGAAGCAGCCATACACTGTAACAGAGCTCAAGGAACTTCACAAGGAAGCATCAGTGCATGGAGTGTCATCCAGACATATAGAACTACGAGATGGAACAGAGTTTAGCTTTCCAACGAACAAAAAGAAACCTTCATATCTCGATAGGTATCCAGACTTCAAAAAGCAGTACCTTGACTCTTTGCGTGAAAAGGATGAGCGTAAAGCTCTGAACCTGTTGCGCGGGTTTATCTTTTATATAACGAATGTGGTTCGTGATGATGCATTCAAACCGTGGCTCGATCAAGAATGTTTGAAGATCAGATGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

38.13

Weight (kDa)

6.44

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 594
AccII CGCG 1 cut(s) 888
AciI CCGC 3 cut(s) 118, 148, 888
AclWI GGATC 1 cut(s) 498
AcsI RAATTY 2 cut(s) 370, 433
AcuI CTGAAG 1 cut(s) 689
AfaI GTAC 2 cut(s) 226, 836
AgsI TTSAA 7 cut(s) 218, 256, 299, 447, 826, 934, 961
AluBI AGCT 3 cut(s) 694, 774, 872
AluI AGCT 3 cut(s) 694, 774, 872
Alw21I GWGCWC 1 cut(s) 696
AlwI GGATC 1 cut(s) 498
ApeKI GCWGC 1 cut(s) 673
ApoI RAATTY 2 cut(s) 370, 433
ArsI GACNNNNNNTTYG 2 cut(s) 259, 291
AspLEI GCGC 1 cut(s) 888
AsuII TTCGAA 1 cut(s) 437
AsuNHI GCTAGC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 696
BarI GAAGNNNNNNTAC 4 cut(s) 662, 694, 806, 838
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 1 cut(s) 685
BccI CCATC 3 cut(s) 38, 589, 752
BciVI GTATCC 1 cut(s) 825
BclI TGATCA 1 cut(s) 625
BfaI CTAG 1 cut(s) 357
BfuI GTATCC 1 cut(s) 825
BglII AGATCT 1 cut(s) 407
BisI GCNGC 1 cut(s) 674
BlsI GCNGC 1 cut(s) 675
BmsI GCATC 2 cut(s) 725, 916
BmtI GCTAGC 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 680
BsaBI GATNNNNATC 1 cut(s) 813
BsaJI CCNNGG 1 cut(s) 938
Bse118I RCCGGY 1 cut(s) 248
Bse3DI GCAATG 1 cut(s) 309
Bse8I GATNNNNATC 1 cut(s) 813
BseDI CCNNGG 1 cut(s) 938
BseGI GGATG 5 cut(s) 385, 400, 616, 734, 865
BseJI GATNNNNATC 1 cut(s) 813
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 50
BseRI GAGGAG 2 cut(s) 198, 500
BseXI GCAGC 1 cut(s) 685
Bsh1236I CGCG 1 cut(s) 888
BsiHKAI GWGCWC 1 cut(s) 696
BsiSI CCGG 1 cut(s) 249
BsmI GAATGC 1 cut(s) 929
Bsp119I TTCGAA 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 696
Bsp143I GATC 6 cut(s) 160, 407, 490, 625, 946, 963
BspACI CCGC 3 cut(s) 118, 148, 888
BspCNI CTCAG 1 cut(s) 51
BspFNI CGCG 1 cut(s) 888
BspOI GCTAGC 1 cut(s) 360
BspPI GGATC 1 cut(s) 498
BspT104I TTCGAA 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 248
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 938
BssMI GATC 6 cut(s) 160, 407, 490, 625, 946, 963
Bst4CI ACNGT 4 cut(s) 423, 499, 685, 939
Bst6I CTCTTC 4 cut(s) 262, 284, 555, 609
BstBI TTCGAA 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 2 cut(s) 59, 74
BstDSI CCRYGG 1 cut(s) 938
BstF5I GGATG 5 cut(s) 385, 400, 616, 734, 865
BstFNI CGCG 1 cut(s) 888
BstHHI GCGC 1 cut(s) 888
BstKTI GATC 6 cut(s) 163, 410, 493, 628, 949, 966
BstMBI GATC 6 cut(s) 160, 407, 490, 625, 946, 963
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstUI CGCG 1 cut(s) 888
BstV1I GCAGC 1 cut(s) 685
BstX2I RGATCY 1 cut(s) 407
BstYI RGATCY 1 cut(s) 407
BsuI GTATCC 1 cut(s) 825
BtgI CCRYGG 1 cut(s) 938
BtsCI GGATG 5 cut(s) 385, 400, 616, 734, 865
BtsI GCAGTG 2 cut(s) 138, 628
BtsIMutI CAGTG 5 cut(s) 138, 504, 628, 681, 726
Cac8I GCNNGC 1 cut(s) 358
CfoI GCGC 1 cut(s) 888
Cfr10I RCCGGY 1 cut(s) 248
CseI GACGC 1 cut(s) 362
Csp6I GTAC 2 cut(s) 225, 835
CviAII CATG 3 cut(s) 212, 320, 725
CviJI RGCY 8 cut(s) 199, 205, 248, 676, 694, 774, 872, 943
CviKI_1 RGCY 8 cut(s) 199, 205, 248, 676, 694, 774, 872, 943
CviQI GTAC 2 cut(s) 225, 835
DdeI CTNAG 2 cut(s) 59, 74
DpnI GATC 6 cut(s) 162, 409, 492, 627, 948, 965
DpnII GATC 6 cut(s) 160, 407, 490, 625, 946, 963
DraI TTTAAA 2 cut(s) 54, 127
Eam1104I CTCTTC 4 cut(s) 262, 284, 555, 609
EarI CTCTTC 4 cut(s) 262, 284, 555, 609
Ecl136II GAGCTC 1 cut(s) 694
Eco24I GRGCYC 1 cut(s) 696
Eco53kI GAGCTC 1 cut(s) 694
Eco57I CTGAAG 1 cut(s) 689
EcoICRI GAGCTC 1 cut(s) 694
EcoT22I ATGCAT 1 cut(s) 931
EcoT38I GRGCYC 1 cut(s) 696
FaeI CATG 3 cut(s) 215, 323, 728
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FatI CATG 3 cut(s) 211, 319, 724
FauI CCCGC 2 cut(s) 111, 881
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 1 cut(s) 674
FokI GGATG 5 cut(s) 392, 407, 623, 721, 872
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 1 cut(s) 674
FspBI CTAG 1 cut(s) 357
GlaI GCGC 1 cut(s) 887
GluI GCNGC 1 cut(s) 674
HapII CCGG 1 cut(s) 249
HgaI GACGC 1 cut(s) 362
HhaI GCGC 1 cut(s) 888
Hin1II CATG 3 cut(s) 215, 323, 728
Hin6I GCGC 1 cut(s) 886
HinP1I GCGC 1 cut(s) 886
HinfI GANTC 6 cut(s) 274, 283, 512, 518, 566, 842
HpaII CCGG 1 cut(s) 249
Hpy166II GTNNAC 2 cut(s) 138, 403
Hpy188III TCNNGA 8 cut(s) 447, 458, 554, 738, 806, 818, 920, 950
Hpy8I GTNNAC 2 cut(s) 138, 403
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 3 cut(s) 226, 358, 807
HpyCH4III ACNGT 4 cut(s) 423, 499, 685, 939
HpyCH4V TGCA 2 cut(s) 724, 929
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpyF3I CTNAG 2 cut(s) 59, 74
Hsp92II CATG 3 cut(s) 215, 323, 728
HspAI GCGC 1 cut(s) 886
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 6 cut(s) 160, 407, 490, 625, 946, 963
LpnPI CCDG 6 cut(s) 262, 471, 539, 751, 831, 893
Lsp1109I GCAGC 1 cut(s) 685
LweI GCATC 2 cut(s) 725, 916
MaeI CTAG 1 cut(s) 357
MaeIII GTNAC 4 cut(s) 62, 178, 235, 685
MalI GATC 6 cut(s) 162, 409, 492, 627, 948, 965
MboI GATC 6 cut(s) 160, 407, 490, 625, 946, 963
MflI RGATCY 1 cut(s) 407
MhlI GDGCHC 1 cut(s) 696
MluCI AATT 4 cut(s) 257, 370, 433, 634
MlyI GAGTC 3 cut(s) 283, 292, 836
MmeI TCCRAC 3 cut(s) 6, 517, 803
MnlI CCTC 8 cut(s) 216, 219, 370, 391, 478, 481, 556, 642
Mph1103I ATGCAT 1 cut(s) 931
MseI TTAA 3 cut(s) 53, 126, 260
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 929
MvnI CGCG 1 cut(s) 888
MwoI GCNNNNNNNGC 1 cut(s) 357
NdeII GATC 6 cut(s) 160, 407, 490, 625, 946, 963
NheI GCTAGC 1 cut(s) 356
NlaIII CATG 3 cut(s) 215, 323, 728
NmuCI GTSAC 1 cut(s) 62
NsiI ATGCAT 1 cut(s) 931
NspV TTCGAA 1 cut(s) 437
PctI GAATGC 1 cut(s) 929
PfeI GAWTC 3 cut(s) 512, 518, 566
PkrI GCNGC 1 cut(s) 675
PleI GAGTC 3 cut(s) 282, 291, 836
PpsI GAGTC 3 cut(s) 282, 291, 836
PsiI TTATAA 1 cut(s) 594
Psp124BI GAGCTC 1 cut(s) 696
PsuI RGATCY 1 cut(s) 407
RsaI GTAC 2 cut(s) 226, 836
RsaNI GTAC 2 cut(s) 225, 835
RseI CAYNNNNRTG 1 cut(s) 345
SacI GAGCTC 1 cut(s) 696
SaqAI TTAA 3 cut(s) 53, 126, 260
SatI GCNGC 1 cut(s) 674
Sau3AI GATC 6 cut(s) 160, 407, 490, 625, 946, 963
SchI GAGTC 3 cut(s) 283, 292, 836
SduI GDGCHC 1 cut(s) 696
SfaNI GCATC 2 cut(s) 725, 916
SfuI TTCGAA 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
Sse9I AATT 4 cut(s) 257, 370, 433, 634
SsiI CCGC 3 cut(s) 118, 148, 888
SspMI CTAG 1 cut(s) 357
SstI GAGCTC 1 cut(s) 696
TaaI ACNGT 4 cut(s) 423, 499, 685, 939
TaqI TCGA 4 cut(s) 163, 437, 807, 945
TasI AATT 4 cut(s) 257, 370, 433, 634
TatI WGTACW 1 cut(s) 224
TfiI GAWTC 3 cut(s) 512, 518, 566
Tru1I TTAA 3 cut(s) 53, 126, 260
Tru9I TTAA 3 cut(s) 53, 126, 260
TscAI CASTG 5 cut(s) 138, 504, 628, 688, 726
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 1 cut(s) 673
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 4 cut(s) 105, 627, 674, 789
TspGWI ACGGA 1 cut(s) 537
TspRI CASTG 5 cut(s) 138, 504, 628, 688, 726
XapI RAATTY 2 cut(s) 370, 433
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XspI CTAG 1 cut(s) 357
Zsp2I ATGCAT 1 cut(s) 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.