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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 840 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2042 |
| AccI | GTMKAC | 1 cut(s) | 2047 |
| AciI | CCGC | 7 cut(s) | 202, 523, 632, 685, 1936, 2087, 2434 |
| AcsI | RAATTY | 9 cut(s) | 283, 426, 604, 1048, 1180, 1469, 1518, 2195, 2305 |
| AfaI | GTAC | 3 cut(s) | 2118, 2149, 2375 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 733, 1307, 2042, 2291 |
| AflIII | ACRYGT | 2 cut(s) | 2027, 2141 |
| AjnI | CCWGG | 3 cut(s) | 1876, 2413, 2466 |
| AleI | CACNNNNGTG | 2 cut(s) | 798, 915 |
| Alw21I | GWGCWC | 2 cut(s) | 1380, 2035 |
| Alw26I | GTCTC | 6 cut(s) | 303, 945, 1675, 1712, 1946, 2048 |
| Alw44I | GTGCAC | 1 cut(s) | 2031 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1166 |
| AoxI | GGCC | 4 cut(s) | 148, 1565, 2282, 2463 |
| ApaI | GGGCCC | 1 cut(s) | 152 |
| ApaLI | GTGCAC | 1 cut(s) | 2031 |
| ApeKI | GCWGC | 2 cut(s) | 1160, 1289 |
| ApoI | RAATTY | 9 cut(s) | 283, 426, 604, 1048, 1180, 1469, 1518, 2195, 2305 |
| AsiSI | GCGATCGC | 1 cut(s) | 2410 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 465, 624, 1258 |
| AspS9I | GGNCC | 5 cut(s) | 6, 148, 149, 1727, 2464 |
| AvaII | GGWCC | 2 cut(s) | 6, 1727 |
| AxyI | CCTNAGG | 1 cut(s) | 1413 |
| BaeGI | GKGCMC | 2 cut(s) | 152, 2035 |
| BamHI | GGATCC | 4 cut(s) | 238, 400, 559, 2128 |
| BanII | GRGCYC | 2 cut(s) | 152, 1380 |
| BbsI | GAAGAC | 1 cut(s) | 2271 |
| Bbv12I | GWGCWC | 2 cut(s) | 1380, 2035 |
| BbvI | GCAGC | 2 cut(s) | 1172, 1301 |
| BccI | CCATC | 5 cut(s) | 272, 434, 593, 884, 944 |
| BceAI | ACGGC | 1 cut(s) | 1597 |
| BciT130I | CCWGG | 3 cut(s) | 1878, 2415, 2468 |
| BciVI | GTATCC | 1 cut(s) | 1845 |
| BclI | TGATCA | 3 cut(s) | 70, 651, 2394 |
| BcoDI | GTCTC | 6 cut(s) | 303, 945, 1675, 1712, 1946, 2048 |
| BfaI | CTAG | 7 cut(s) | 225, 915, 975, 1152, 1295, 1536, 1800 |
| BfmI | CTRYAG | 3 cut(s) | 882, 1846, 2525 |
| BfuI | GTATCC | 1 cut(s) | 1845 |
| BglII | AGATCT | 2 cut(s) | 878, 2380 |
| BisI | GCNGC | 2 cut(s) | 1161, 1290 |
| BlpI | GCTNAGC | 1 cut(s) | 1156 |
| BlsI | GCNGC | 2 cut(s) | 1162, 1291 |
| Bme1390I | CCNGG | 3 cut(s) | 1878, 2415, 2468 |
| Bme18I | GGWCC | 2 cut(s) | 6, 1727 |
| BmgT120I | GGNCC | 5 cut(s) | 6, 148, 149, 1727, 2464 |
| BmiI | GGNNCC | 9 cut(s) | 150, 240, 402, 561, 1023, 1324, 1359, 1728, 2130 |
| BmrFI | CCNGG | 3 cut(s) | 1878, 2415, 2468 |
| BmrI | ACTGGG | 1 cut(s) | 1107 |
| BmsI | GCATC | 5 cut(s) | 206, 368, 527, 1129, 2257 |
| BmuI | ACTGGG | 1 cut(s) | 1107 |
| BpiI | GAAGAC | 1 cut(s) | 2271 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 27 |
| BpmI | CTGGAG | 7 cut(s) | 35, 1373, 1377, 1575, 2141, 2290, 2387 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1156 |
| BpuEI | CTTGAG | 4 cut(s) | 289, 778, 2024, 2237 |
| BsaBI | GATNNNNATC | 3 cut(s) | 237, 399, 558 |
| BsaI | GGTCTC | 1 cut(s) | 1675 |
| BsaJI | CCNNGG | 6 cut(s) | 152, 197, 1002, 2413, 2466, 2486 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 733, 1307, 2042, 2291 |
| Bse1I | ACTGG | 7 cut(s) | 621, 1102, 1335, 2124, 2132, 2273, 2453 |
| Bse21I | CCTNAGG | 1 cut(s) | 1413 |
| Bse3DI | GCAATG | 3 cut(s) | 784, 1921, 1945 |
| Bse8I | GATNNNNATC | 3 cut(s) | 237, 399, 558 |
| BseBI | CCWGG | 3 cut(s) | 1878, 2415, 2468 |
| BseDI | CCNNGG | 6 cut(s) | 152, 197, 1002, 2413, 2466, 2486 |
| BseGI | GGATG | 6 cut(s) | 49, 145, 793, 835, 1066, 1819 |
| BseJI | GATNNNNATC | 3 cut(s) | 237, 399, 558 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 733, 1307, 2042, 2291 |
| BseMI | GCAATG | 3 cut(s) | 784, 1921, 1945 |
| BseMII | CTCAG | 3 cut(s) | 257, 419, 1427 |
| BseNI | ACTGG | 7 cut(s) | 621, 1102, 1335, 2124, 2132, 2273, 2453 |
| BseSI | GKGCMC | 2 cut(s) | 152, 2035 |
| BseXI | GCAGC | 2 cut(s) | 1172, 1301 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2410 |
| BshFI | GGCC | 4 cut(s) | 150, 1567, 2284, 2465 |
| BsiEI | CGRYCG | 1 cut(s) | 2410 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1380, 2035 |
| BslFI | GGGAC | 2 cut(s) | 916, 1740 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 733, 1307, 2042, 2291 |
| BsmAI | GTCTC | 6 cut(s) | 303, 945, 1675, 1712, 1946, 2048 |
| BsmFI | GGGAC | 2 cut(s) | 916, 1740 |
| BsmI | GAATGC | 4 cut(s) | 1078, 1282, 1552, 2089 |
| BsnI | GGCC | 4 cut(s) | 150, 1567, 2284, 2465 |
| Bso31I | GGTCTC | 1 cut(s) | 1675 |
| Bsp120I | GGGCCC | 1 cut(s) | 148 |
| Bsp1286I | GDGCHC | 3 cut(s) | 152, 1380, 2035 |
| Bsp1407I | TGTACA | 1 cut(s) | 2373 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1156 |
| BspACI | CCGC | 7 cut(s) | 202, 523, 632, 685, 1936, 2087, 2434 |
| BspANI | GGCC | 4 cut(s) | 150, 1567, 2284, 2465 |
| BspCNI | CTCAG | 3 cut(s) | 256, 418, 1426 |
| BspHI | TCATGA | 2 cut(s) | 112, 369 |
| BspLI | GGNNCC | 9 cut(s) | 150, 240, 402, 561, 1023, 1324, 1359, 1728, 2130 |
| BspQI | GCTCTTC | 2 cut(s) | 1368, 1896 |
| BspTNI | GGTCTC | 1 cut(s) | 1675 |
| BsrDI | GCAATG | 3 cut(s) | 784, 1921, 1945 |
| BsrGI | TGTACA | 1 cut(s) | 2373 |
| BsrI | ACTGG | 7 cut(s) | 621, 1102, 1335, 2124, 2132, 2273, 2453 |
| BssECI | CCNNGG | 6 cut(s) | 152, 197, 1002, 2413, 2466, 2486 |
| BssT1I | CCWWGG | 3 cut(s) | 197, 1002, 2486 |
| Bst2UI | CCWGG | 3 cut(s) | 1878, 2415, 2468 |
| Bst4CI | ACNGT | 4 cut(s) | 350, 972, 1322, 2526 |
| Bst6I | CTCTTC | 4 cut(s) | 686, 1368, 1710, 1896 |
| BstAUI | TGTACA | 1 cut(s) | 2373 |
| BstC8I | GCNNGC | 2 cut(s) | 2286, 2404 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2289 |
| BstF5I | GGATG | 6 cut(s) | 49, 145, 793, 835, 1066, 1819 |
| BstMAI | GTCTC | 6 cut(s) | 303, 945, 1675, 1712, 1946, 2048 |
| BstMCI | CGRYCG | 1 cut(s) | 2410 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1286, 2254 |
| BstNI | CCWGG | 3 cut(s) | 1878, 2415, 2468 |
| BstNSI | RCATGY | 2 cut(s) | 2031, 2145 |
| BstSCI | CCNGG | 3 cut(s) | 1876, 2413, 2466 |
| BstSFI | CTRYAG | 3 cut(s) | 882, 1846, 2525 |
| BstSLI | GKGCMC | 2 cut(s) | 152, 2035 |
| BstV1I | GCAGC | 2 cut(s) | 1172, 1301 |
| BstV2I | GAAGAC | 1 cut(s) | 2271 |
| BstX2I | RGATCY | 9 cut(s) | 238, 400, 559, 878, 1240, 1297, 1777, 2128, 2380 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 350, 671, 1133 |
| BstYI | RGATCY | 9 cut(s) | 238, 400, 559, 878, 1240, 1297, 1777, 2128, 2380 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1413 |
| BsuI | GTATCC | 1 cut(s) | 1845 |
| BsuRI | GGCC | 4 cut(s) | 150, 1567, 2284, 2465 |
| BtsCI | GGATG | 6 cut(s) | 49, 145, 793, 835, 1066, 1819 |
| BtsIMutI | CAGTG | 5 cut(s) | 614, 1164, 1269, 1497, 2336 |
| Cac8I | GCNNGC | 2 cut(s) | 2286, 2404 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1166 |
| CciI | TCATGA | 2 cut(s) | 112, 369 |
| Cfr13I | GGNCC | 5 cut(s) | 6, 148, 149, 1727, 2464 |
| CsiI | ACCWGGT | 1 cut(s) | 1876 |
| Csp6I | GTAC | 3 cut(s) | 2117, 2148, 2374 |
| CviQI | GTAC | 3 cut(s) | 2117, 2148, 2374 |
| DraI | TTTAAA | 2 cut(s) | 1236, 1707 |
| Eam1104I | CTCTTC | 4 cut(s) | 686, 1368, 1710, 1896 |
| EarI | CTCTTC | 4 cut(s) | 686, 1368, 1710, 1896 |
| EciI | GGCGGA | 1 cut(s) | 217 |
| Ecl136II | GAGCTC | 1 cut(s) | 1378 |
| Eco130I | CCWWGG | 3 cut(s) | 197, 1002, 2486 |
| Eco147I | AGGCCT | 2 cut(s) | 1567, 2284 |
| Eco24I | GRGCYC | 2 cut(s) | 152, 1380 |
| Eco31I | GGTCTC | 1 cut(s) | 1675 |
| Eco32I | GATATC | 1 cut(s) | 817 |
| Eco47I | GGWCC | 2 cut(s) | 6, 1727 |
| Eco53kI | GAGCTC | 1 cut(s) | 1378 |
| Eco81I | CCTNAGG | 1 cut(s) | 1413 |
| EcoICRI | GAGCTC | 1 cut(s) | 1378 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2289 |
| EcoO109I | RGGNCCY | 1 cut(s) | 149 |
| EcoRI | GAATTC | 2 cut(s) | 283, 1180 |
| EcoRII | CCWGG | 3 cut(s) | 1876, 2413, 2466 |
| EcoRV | GATATC | 1 cut(s) | 817 |
| EcoT14I | CCWWGG | 3 cut(s) | 197, 1002, 2486 |
| EcoT22I | ATGCAT | 3 cut(s) | 221, 383, 457 |
| EcoT38I | GRGCYC | 2 cut(s) | 152, 1380 |
| ErhI | CCWWGG | 3 cut(s) | 197, 1002, 2486 |
| FaqI | GGGAC | 2 cut(s) | 916, 1740 |
| FauI | CCCGC | 3 cut(s) | 625, 678, 2427 |
| FauNDI | CATATG | 6 cut(s) | 177, 289, 451, 610, 2059, 2332 |
| FbaI | TGATCA | 3 cut(s) | 70, 651, 2394 |
| FblI | GTMKAC | 1 cut(s) | 2047 |
| Fnu4HI | GCNGC | 2 cut(s) | 1161, 1290 |
| FokI | GGATG | 6 cut(s) | 56, 152, 800, 842, 1073, 1826 |
| FriOI | GRGCYC | 2 cut(s) | 152, 1380 |
| Fsp4HI | GCNGC | 2 cut(s) | 1161, 1290 |
| FspBI | CTAG | 7 cut(s) | 225, 915, 975, 1152, 1295, 1536, 1800 |
| GluI | GCNGC | 2 cut(s) | 1161, 1290 |
| GsuI | CTGGAG | 7 cut(s) | 35, 1373, 1377, 1575, 2141, 2290, 2387 |
| HaeIII | GGCC | 4 cut(s) | 150, 1567, 2284, 2465 |
| HindIII | AAGCTT | 2 cut(s) | 1597, 2476 |
| Hpy166II | GTNNAC | 6 cut(s) | 9, 1221, 1270, 2033, 2048, 2374 |
| Hpy8I | GTNNAC | 6 cut(s) | 9, 1221, 1270, 2033, 2048, 2374 |
| HpyAV | CCTTC | 5 cut(s) | 1804, 1813, 2155, 2209, 2465 |
| HpyCH4III | ACNGT | 4 cut(s) | 350, 972, 1322, 2526 |
| HpyCH4IV | ACGT | 2 cut(s) | 572, 2227 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1286, 2254 |
| HpySE526I | ACGT | 2 cut(s) | 572, 2227 |
| Ksp22I | TGATCA | 3 cut(s) | 70, 651, 2394 |
| LguI | GCTCTTC | 2 cut(s) | 1368, 1896 |
| LmnI | GCTCC | 2 cut(s) | 525, 2218 |
| Lsp1109I | GCAGC | 2 cut(s) | 1172, 1301 |
| LweI | GCATC | 5 cut(s) | 206, 368, 527, 1129, 2257 |
| MabI | ACCWGGT | 1 cut(s) | 1876 |
| MaeI | CTAG | 7 cut(s) | 225, 915, 975, 1152, 1295, 1536, 1800 |
| MaeII | ACGT | 2 cut(s) | 572, 2227 |
| MaeIII | GTNAC | 1 cut(s) | 1931 |
| MflI | RGATCY | 9 cut(s) | 238, 400, 559, 878, 1240, 1297, 1777, 2128, 2380 |
| MhlI | GDGCHC | 3 cut(s) | 152, 1380, 2035 |
| MlyI | GAGTC | 1 cut(s) | 1195 |
| MmeI | TCCRAC | 1 cut(s) | 699 |
| Mph1103I | ATGCAT | 3 cut(s) | 221, 383, 457 |
| MroXI | GAANNNNTTC | 3 cut(s) | 465, 624, 1258 |
| MseI | TTAA | 8 cut(s) | 768, 936, 1235, 1706, 2111, 2157, 2199, 2223 |
| MslI | CAYNNNNRTG | 6 cut(s) | 117, 507, 777, 798, 915, 951 |
| MspR9I | CCNGG | 3 cut(s) | 1878, 2415, 2468 |
| Mva1269I | GAATGC | 4 cut(s) | 1078, 1282, 1552, 2089 |
| MvaI | CCWGG | 3 cut(s) | 1878, 2415, 2468 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1286, 2254 |
| NdeI | CATATG | 6 cut(s) | 177, 289, 451, 610, 2059, 2332 |
| NlaIV | GGNNCC | 9 cut(s) | 150, 240, 402, 561, 1023, 1324, 1359, 1728, 2130 |
| NmuCI | GTSAC | 1 cut(s) | 1931 |
| NsiI | ATGCAT | 3 cut(s) | 221, 383, 457 |
| NspI | RCATGY | 2 cut(s) | 2031, 2145 |
| OliI | CACNNNNGTG | 2 cut(s) | 798, 915 |
| PagI | TCATGA | 2 cut(s) | 112, 369 |
| PceI | AGGCCT | 2 cut(s) | 1567, 2284 |
| PciI | ACATGT | 2 cut(s) | 2027, 2141 |
| PciSI | GCTCTTC | 2 cut(s) | 1368, 1896 |
| PctI | GAATGC | 4 cut(s) | 1078, 1282, 1552, 2089 |
| PdmI | GAANNNNTTC | 3 cut(s) | 465, 624, 1258 |
| PflFI | GACNNNGTC | 1 cut(s) | 1347 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2042 |
| PkrI | GCNGC | 2 cut(s) | 1162, 1291 |
| Ple19I | CGATCG | 1 cut(s) | 2410 |
| PleI | GAGTC | 1 cut(s) | 1195 |
| PpsI | GAGTC | 1 cut(s) | 1195 |
| PscI | ACATGT | 2 cut(s) | 2027, 2141 |
| PsiI | TTATAA | 1 cut(s) | 840 |
| Psp124BI | GAGCTC | 1 cut(s) | 1380 |
| Psp6I | CCWGG | 3 cut(s) | 1876, 2413, 2466 |
| PspGI | CCWGG | 3 cut(s) | 1876, 2413, 2466 |
| PspN4I | GGNNCC | 9 cut(s) | 150, 240, 402, 561, 1023, 1324, 1359, 1728, 2130 |
| PspOMI | GGGCCC | 1 cut(s) | 148 |
| PspPI | GGNCC | 5 cut(s) | 6, 148, 149, 1727, 2464 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 239, 271 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1166 |
| PsuI | RGATCY | 9 cut(s) | 238, 400, 559, 878, 1240, 1297, 1777, 2128, 2380 |
| PsyI | GACNNNGTC | 1 cut(s) | 1347 |
| PvuI | CGATCG | 1 cut(s) | 2410 |
| RgaI | GCGATCGC | 1 cut(s) | 2410 |
| RsaI | GTAC | 3 cut(s) | 2118, 2149, 2375 |
| RsaNI | GTAC | 3 cut(s) | 2117, 2148, 2374 |
| RseI | CAYNNNNRTG | 6 cut(s) | 117, 507, 777, 798, 915, 951 |
| SacI | GAGCTC | 1 cut(s) | 1380 |
| SapI | GCTCTTC | 2 cut(s) | 1368, 1896 |
| SaqAI | TTAA | 8 cut(s) | 768, 936, 1235, 1706, 2111, 2157, 2199, 2223 |
| SatI | GCNGC | 2 cut(s) | 1161, 1290 |
| Sau96I | GGNCC | 5 cut(s) | 6, 148, 149, 1727, 2464 |
| SchI | GAGTC | 1 cut(s) | 1195 |
| ScrFI | CCNGG | 3 cut(s) | 1878, 2415, 2468 |
| SduI | GDGCHC | 3 cut(s) | 152, 1380, 2035 |
| SexAI | ACCWGGT | 1 cut(s) | 1876 |
| SfaAI | GCGATCGC | 1 cut(s) | 2410 |
| SfaNI | GCATC | 5 cut(s) | 206, 368, 527, 1129, 2257 |
| SfcI | CTRYAG | 3 cut(s) | 882, 1846, 2525 |
| SgfI | GCGATCGC | 1 cut(s) | 2410 |
| SinI | GGWCC | 2 cut(s) | 6, 1727 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 117, 507, 777, 798, 915, 951 |
| SmlI | CTYRAG | 4 cut(s) | 268, 757, 2003, 2252 |
| SmoI | CTYRAG | 4 cut(s) | 268, 757, 2003, 2252 |
| SseBI | AGGCCT | 2 cut(s) | 1567, 2284 |
| SsiI | CCGC | 7 cut(s) | 202, 523, 632, 685, 1936, 2087, 2434 |
| SspMI | CTAG | 7 cut(s) | 225, 915, 975, 1152, 1295, 1536, 1800 |
| SstI | GAGCTC | 1 cut(s) | 1380 |
| StuI | AGGCCT | 2 cut(s) | 1567, 2284 |
| StyD4I | CCNGG | 3 cut(s) | 1876, 2413, 2466 |
| StyI | CCWWGG | 3 cut(s) | 197, 1002, 2486 |
| TaaI | ACNGT | 4 cut(s) | 350, 972, 1322, 2526 |
| TaiI | ACGT | 2 cut(s) | 575, 2230 |
| TaqI | TCGA | 2 cut(s) | 50, 307 |
| TaqII | GACCGA | 2 cut(s) | 144, 1298 |
| TatI | WGTACW | 2 cut(s) | 2116, 2373 |
| Tru1I | TTAA | 8 cut(s) | 768, 936, 1235, 1706, 2111, 2157, 2199, 2223 |
| Tru9I | TTAA | 8 cut(s) | 768, 936, 1235, 1706, 2111, 2157, 2199, 2223 |
| TscAI | CASTG | 5 cut(s) | 621, 1171, 1269, 1497, 2343 |
| TseFI | GTSAC | 1 cut(s) | 1931 |
| TseI | GCWGC | 2 cut(s) | 1160, 1289 |
| Tsp45I | GTSAC | 1 cut(s) | 1931 |
| TspGWI | ACGGA | 1 cut(s) | 1070 |
| TspRI | CASTG | 5 cut(s) | 621, 1171, 1269, 1497, 2343 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1347 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2042 |
| VneI | GTGCAC | 1 cut(s) | 2031 |
| VpaK11BI | GGWCC | 2 cut(s) | 6, 1727 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2289 |
| XapI | RAATTY | 9 cut(s) | 283, 426, 604, 1048, 1180, 1469, 1518, 2195, 2305 |
| XbaI | TCTAGA | 1 cut(s) | 1294 |
| XceI | RCATGY | 2 cut(s) | 2031, 2145 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1039 |
| XmiI | GTMKAC | 1 cut(s) | 2047 |
| XmnI | GAANNNNTTC | 3 cut(s) | 465, 624, 1258 |
| XspI | CTAG | 7 cut(s) | 225, 915, 975, 1152, 1295, 1536, 1800 |
| Zsp2I | ATGCAT | 3 cut(s) | 221, 383, 457 |