Rorug06G0266600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000931
Physical Location & Seq
Forward (+)
41323045 .. 41324845
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0266600.1

Sequence Viewer

Length: 840 bp
ATGGTCCCGGGGTCTCGATGCTTGGTGCTGTCTGAGCAGGAAGATCTGGTGGCCGCGGCCGGTCGGGGTACGGACTGGAGCTTCGGGCGGTGGCTTGGGGTGGATTCTCGACCTCTGTTGCTGGCGGTCGAGGATTGCGACGGAGGTAGCAAAGTCAATTACCTTGGACTGGGGTTGATTGCGGCTTGGTGCGGCGAAGGTTACGGTGGACTGCTGGGTCAGTTGTCGACCGGCGTCGTTGAAGGGAGGCAAACTGGTGGTTGGCGGCTGCTGGCTGGGGTGCCCAAGTGGATGGGTGGCCTTTCCAATTCCAACTGGGCTTGGGTTGAAGACTTAAATCATCTCTTTGTTTCTGCCCTTTCTCCTCTAATGTTTGGAATTTGGCTAGAACATTTTCTTCGACCCCTTGTGCCTATAATTCCATCCAAGACTGGTTTCATCACATTTTTCTGGTGCGTAAGGACATTACTCTCATTGAGAACTGCATTTTTATTTGTTGGAAGATTTGGGAGGCCAAAAATAACTTCATCTTCAGGCAAATCCCTCCCCTCCCAAATATGGTCGTCCACTCTACTGCTACTATTGGAACAACTAAGAAGTCTCAATTCCCATGACTCTGACAAGACTCCTCGCCAAATGTATGGTGTTATTAGGTGGTCTTCGCCGCCAGATGATGTTTTCAAGCTCAATTTCGATGGTTCAGTGAATCACTCTCAGTTAGCAGCAGCTGGGTTTATCATCAGATACCACTCTGGCACCCTCATCATTGCTAGTACCCGAAAAATTGGTCTCGCTTTAATTCCAGTTGCTGAATGCAGTGCTATGAAGGATGGTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

30.42

Weight (kDa)

8.87

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 216
AccB1I GGYRCC 2 cut(s) 280, 755
AccI GTMKAC 1 cut(s) 227
AccII CGCG 1 cut(s) 56
AciI CCGC 8 cut(s) 54, 56, 88, 125, 182, 192, 265, 665
AcoI YGGCCR 2 cut(s) 51, 57
AcsI RAATTY 1 cut(s) 378
AcuI CTGAAG 1 cut(s) 516
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 2 cut(s) 70, 775
AfiI CCNNNNNNNGG 2 cut(s) 169, 558
AgsI TTSAA 3 cut(s) 242, 329, 682
AjuI GAANNNNNNNTTGG 4 cut(s) 419, 451, 508, 540
AluBI AGCT 3 cut(s) 81, 685, 728
AluI AGCT 3 cut(s) 81, 685, 728
Alw26I GTCTC 3 cut(s) 18, 605, 794
AlwNI CAGNNNCTG 2 cut(s) 728, 809
Ama87I CYCGRG 1 cut(s) 7
AoxI GGCC 4 cut(s) 51, 57, 298, 512
ApeKI GCWGC 3 cut(s) 268, 722, 725
ApoI RAATTY 1 cut(s) 378
ArsI GACNNNNNNTTYG 4 cut(s) 65, 97, 772, 804
Asp700I GAANNNNTTC 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 2 cut(s) 8, 9
AvaI CYCGRG 1 cut(s) 7
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 285
BanI GGYRCC 2 cut(s) 280, 755
BbsI GAAGAC 2 cut(s) 336, 651
BbvI GCAGC 3 cut(s) 255, 734, 737
BccI CCATC 4 cut(s) 286, 430, 689, 824
BcnI CCSGG 2 cut(s) 8, 9
BcoDI GTCTC 3 cut(s) 18, 605, 794
BfaI CTAG 2 cut(s) 386, 771
BglII AGATCT 1 cut(s) 43
BisI GCNGC 9 cut(s) 54, 57, 183, 193, 266, 269, 665, 723, 726
BlsI GCNGC 9 cut(s) 55, 58, 184, 194, 267, 270, 666, 724, 727
Bme1390I CCNGG 2 cut(s) 8, 9
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 6, 282, 757
BmrFI CCNGG 2 cut(s) 8, 9
BmrI ACTGGG 2 cut(s) 179, 325
BmsI GCATC 1 cut(s) 8
BmuI ACTGGG 2 cut(s) 179, 325
BoxI GACNNNNGTC 1 cut(s) 233
BpiI GAAGAC 2 cut(s) 336, 651
BpmI CTGGAG 1 cut(s) 97
BpuMI CCSGG 2 cut(s) 8, 9
BsaHI GRCGYC 1 cut(s) 234
BsaI GGTCTC 2 cut(s) 18, 794
BsaJI CCNNGG 4 cut(s) 7, 8, 54, 163
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 558
Bse118I RCCGGY 2 cut(s) 59, 230
Bse1I ACTGG 6 cut(s) 80, 174, 259, 320, 436, 803
Bse3DI GCAATG 1 cut(s) 765
BseDI CCNNGG 4 cut(s) 7, 8, 54, 163
BseGI GGATG 3 cut(s) 297, 422, 835
BseLI CCNNNNNNNGG 2 cut(s) 169, 558
BseMI GCAATG 1 cut(s) 765
BseMII CTCAG 2 cut(s) 24, 728
BseNI ACTGG 6 cut(s) 80, 174, 259, 320, 436, 803
BseRI GAGGAG 2 cut(s) 354, 618
BseSI GKGCMC 1 cut(s) 285
BseX3I CGGCCG 1 cut(s) 57
BseXI GCAGC 3 cut(s) 255, 734, 737
BseYI CCCAGC 3 cut(s) 214, 275, 728
Bsh1236I CGCG 1 cut(s) 56
Bsh1285I CGRYCG 4 cut(s) 60, 64, 129, 231
BshFI GGCC 4 cut(s) 53, 59, 300, 514
BshNI GGYRCC 2 cut(s) 280, 755
BsiEI CGRYCG 4 cut(s) 60, 64, 129, 231
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 3 cut(s) 8, 60, 231
BslI CCNNNNNNNGG 2 cut(s) 169, 558
BsmAI GTCTC 3 cut(s) 18, 605, 794
BsmI GAATGC 1 cut(s) 818
BsnI GGCC 4 cut(s) 53, 59, 300, 514
Bso31I GGTCTC 2 cut(s) 18, 794
BsoBI CYCGRG 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 8 cut(s) 54, 56, 88, 125, 182, 192, 265, 665
BspANI GGCC 4 cut(s) 53, 59, 300, 514
BspCNI CTCAG 2 cut(s) 25, 727
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 3 cut(s) 6, 282, 757
BspT107I GGYRCC 2 cut(s) 280, 755
BspTNI GGTCTC 2 cut(s) 18, 794
BsrDI GCAATG 1 cut(s) 765
BsrFI RCCGGY 2 cut(s) 59, 230
BsrI ACTGG 6 cut(s) 80, 174, 259, 320, 436, 803
BssAI RCCGGY 2 cut(s) 59, 230
BssECI CCNNGG 4 cut(s) 7, 8, 54, 163
BssMI GATC 1 cut(s) 43
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 123, 273
BstDEI CTNAG 3 cut(s) 33, 593, 714
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 3 cut(s) 297, 422, 835
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 1 cut(s) 46
BstMAI GTCTC 3 cut(s) 18, 605, 794
BstMBI GATC 1 cut(s) 43
BstMCI CGRYCG 4 cut(s) 60, 64, 129, 231
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstPAI GACNNNNGTC 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 6, 7
BstSLI GKGCMC 1 cut(s) 285
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 3 cut(s) 255, 734, 737
BstV2I GAAGAC 2 cut(s) 336, 651
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 2 cut(s) 292, 641
BstYI RGATCY 1 cut(s) 43
BstZI CGGCCG 1 cut(s) 57
BsuRI GGCC 4 cut(s) 53, 59, 300, 514
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 3 cut(s) 297, 422, 835
BtsI GCAGTG 1 cut(s) 823
BtsIMutI CAGTG 2 cut(s) 708, 823
Cac8I GCNNGC 2 cut(s) 123, 273
CaiI CAGNNNCTG 2 cut(s) 728, 809
Cfr10I RCCGGY 2 cut(s) 59, 230
Cfr13I GGNCC 1 cut(s) 4
Cfr42I CCGCGG 1 cut(s) 57
Cfr9I CCCGGG 1 cut(s) 7
CseI GACGC 1 cut(s) 223
Csp6I GTAC 2 cut(s) 69, 774
CviAII CATG 1 cut(s) 611
CviQI GTAC 2 cut(s) 69, 774
DdeI CTNAG 3 cut(s) 33, 593, 714
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
DrdI GACNNNNNNGTC 1 cut(s) 216
DseDI GACNNNNNNGTC 1 cut(s) 216
EaeI YGGCCR 2 cut(s) 51, 57
EagI CGGCCG 1 cut(s) 57
EclXI CGGCCG 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 163
Eco31I GGTCTC 2 cut(s) 18, 794
Eco47I GGWCC 1 cut(s) 4
Eco52I CGGCCG 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 1 cut(s) 614
FaiI YATR 5 cut(s) 416, 559, 612, 642, 824
FatI CATG 1 cut(s) 610
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 9 cut(s) 54, 57, 183, 193, 266, 269, 665, 723, 726
FokI GGATG 2 cut(s) 304, 409
Fsp4HI GCNGC 9 cut(s) 54, 57, 183, 193, 266, 269, 665, 723, 726
FspBI CTAG 2 cut(s) 386, 771
GluI GCNGC 9 cut(s) 54, 57, 183, 193, 266, 269, 665, 723, 726
GsaI CCCAGC 3 cut(s) 218, 279, 732
GsuI CTGGAG 1 cut(s) 97
HaeIII GGCC 4 cut(s) 53, 59, 300, 514
HapII CCGG 3 cut(s) 8, 60, 231
HgaI GACGC 1 cut(s) 223
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 1 cut(s) 614
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 4 cut(s) 104, 614, 625, 706
HpaII CCGG 3 cut(s) 8, 60, 231
Hpy166II GTNNAC 3 cut(s) 209, 228, 567
Hpy188I TCNGA 4 cut(s) 34, 619, 743, 839
Hpy188III TCNNGA 2 cut(s) 15, 108
Hpy8I GTNNAC 3 cut(s) 209, 228, 567
Hpy99I CGWCG 2 cut(s) 143, 239
HpyAV CCTTC 3 cut(s) 191, 236, 820
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 2 cut(s) 485, 816
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 3 cut(s) 33, 593, 714
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 1 cut(s) 614
KspI CCGCGG 1 cut(s) 57
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 78
Lsp1109I GCAGC 3 cut(s) 255, 734, 737
LweI GCATC 1 cut(s) 8
MaeI CTAG 2 cut(s) 386, 771
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 6 cut(s) 53, 341, 389, 513, 522, 651
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 8 cut(s) 157, 307, 378, 417, 604, 688, 783, 798
MlyI GAGTC 2 cut(s) 608, 619
MmeI TCCRAC 2 cut(s) 336, 478
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 2 cut(s) 335, 797
MspA1I CMGCKG 2 cut(s) 56, 728
MspI CCGG 3 cut(s) 8, 60, 231
MspR9I CCNGG 2 cut(s) 8, 9
Mva1269I GAATGC 1 cut(s) 818
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 34
NciI CCSGG 2 cut(s) 8, 9
NdeII GATC 1 cut(s) 43
NlaIII CATG 1 cut(s) 614
NlaIV GGNNCC 3 cut(s) 6, 282, 757
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PctI GAATGC 1 cut(s) 818
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 104, 706
PkrI GCNGC 9 cut(s) 55, 58, 184, 194, 267, 270, 666, 724, 727
PleI GAGTC 2 cut(s) 608, 619
PpsI GAGTC 2 cut(s) 608, 619
PshAI GACNNNNGTC 1 cut(s) 233
PspFI CCCAGC 3 cut(s) 214, 275, 728
PspN4I GGNNCC 3 cut(s) 6, 282, 757
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 2 cut(s) 728, 809
PsuI RGATCY 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 728
RsaI GTAC 2 cut(s) 70, 775
RsaNI GTAC 2 cut(s) 69, 774
SacII CCGCGG 1 cut(s) 57
SalI GTCGAC 1 cut(s) 226
SaqAI TTAA 2 cut(s) 335, 797
SatI GCNGC 9 cut(s) 54, 57, 183, 193, 266, 269, 665, 723, 726
Sau3AI GATC 1 cut(s) 43
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 608, 619
ScrFI CCNGG 2 cut(s) 8, 9
SduI GDGCHC 1 cut(s) 285
SetI ASST 8 cut(s) 83, 115, 148, 165, 202, 656, 687, 730
SfaNI GCATC 1 cut(s) 8
Sfr303I CCGCGG 1 cut(s) 57
SgrBI CCGCGG 1 cut(s) 57
SinI GGWCC 1 cut(s) 4
SmaI CCCGGG 1 cut(s) 9
Sse9I AATT 8 cut(s) 157, 307, 378, 417, 604, 688, 783, 798
SsiI CCGC 8 cut(s) 54, 56, 88, 125, 182, 192, 265, 665
SspMI CTAG 2 cut(s) 386, 771
StyD4I CCNGG 2 cut(s) 6, 7
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 6 cut(s) 16, 109, 129, 227, 400, 693
TasI AATT 8 cut(s) 157, 307, 378, 417, 604, 688, 783, 798
TauI GCSGC 6 cut(s) 56, 59, 185, 195, 268, 667
TfiI GAWTC 2 cut(s) 104, 706
Tru1I TTAA 2 cut(s) 335, 797
Tru9I TTAA 2 cut(s) 335, 797
TscAI CASTG 2 cut(s) 708, 823
TseI GCWGC 3 cut(s) 268, 722, 725
TspDTI ATGAA 3 cut(s) 427, 516, 839
TspGWI ACGGA 2 cut(s) 86, 156
TspMI CCCGGG 1 cut(s) 7
TspRI CASTG 2 cut(s) 708, 823
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 378
XmaI CCCGGG 1 cut(s) 7
XmiI GTMKAC 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 2 cut(s) 386, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.