Rh6CG390600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000931
Physical Location & Seq
Reverse (-)
57734348 .. 57740480
6133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG390600.1

Sequence Viewer

Length: 1695 bp
ATGGGGACCTTTTCTGTGAGAAAGAGGGTCAGGCTTGCTGAGGAATATTCACATTTTGAGGATCAATTGTTGTTGGATACGAATTATGAGAAGTTCTTGGGGTTAGTTCAGGTTGGTGATGAAAATTTGGACAATTTTTCTGTGGATCAAGCTACTTATGAGCCCAATTTAGATGTTCCAGAAACTTCGAAAAAATCTCAGGTGACTGAGAAGAATTTGAGGAAGGGTATGATTAGGGGAGAGATGAATGGCCTTGAGAAATCTGCTGTTCTTCTGACCACAGAAGTTAATGAGGGCCCAAGTAATGTTAGGTATGCTCTGAAGGAAAACAGGGCCACTGTGGAAAAAGAGGATCTCCGAGTGAACAAGAGTTTATTTGTGATGGAGAATGTAAAATTGGAACCTCTAGATTTTGATTCTGGTGGGATGAATCAGTGTTCCAATAAAAGAACTCACTTAGAAGCTTTTAACACTCAAAAATCTTTGAAAAGTGCAGTGGAGAATGTAAAAGTGGAAGCTCTGGATTCTGATTCTGGTTGGAACCGTGGGATAAGTGAGCGTTGCAGTAAAAGACCTTGTTTAGAGGCTTCTGACACTCCAAAGACGCTGAAAAGTTCTCGGGTGAAAAAGAAAAACAAAATTAACAGAACTTCAAGGAGATTTTTGAAGAAAGGAAAGATGAAGATAAATATTCCTAACAAGTCTGCTAGTCTTTTGCCTGAAAAAAAGACTGGGGTGAAGAAAAAGGTTAATGTGGAAGCTGCACATGCTGTTTCTGGTAGGTCAAATGTGCTCTCTAGCAAACAAAAAGGTTCCCGGATCCTACAATCTGCTCCGCGTAGGTGTAACCGTGGAGCTTTATCTATTCATATTGATCAGACCTATGAAACATTTCTCAACCTTGCTGTGATGTCTGGTGACATAATGATATATACACCCAGAAATGGTACAAGAAATATTTATGAGGAGGATATGGAGAGTTCATCAGATTCAGAAGAAACTGTACTAGACAACAATCGACGTGATGGATATCATCCCTCATATGTGAAAACCAAGGCCGCAACTAACAGAACTTTGAGGAGGGGTGTGATGAAGAAAAAGATGAGCTGCCCTAAGAACTACGAAGATACTTCCTCAGATTCGGATCTAAATGAACAGGACAGTCATCAACATGATGGATGTCGTGCCTCATTTGTGAAAAATAATACTGCAATTAATAGAACTATGAGAAAAACTGTGAGCCCAAGAGCTCGTAGGAGTACTCTGCAGAATAAAAACAGGAAGACTCCCACCGGAAATTTAGAGGTCCTCCGAGCAAAAAAGAGTTCAGTGGCAAAGAAGAAGAATATAAAAGAAACTCTGAATACTGTTAGTGCTGAATGTGATTTAGTAGATGAGAGTTATGAAGAATTCATAAGTTTCGTTGAGGTGGATGGTAAAAATTTGGTGTATACACCAAGCAATGGTGGACGAAAGATATATGAGGAGCAGGAGGCTACATCAGATGCAATGCACAGGGATTCACTTGATAGTTTTCATATAGTATGCCCCTTCTTCATTTTATCATTTTTTTTTTTTTTTGCTTTCTGCCTTGGTGCTATCACAGGACACACACAGAGACATGTGCATGCAGACATAACATACATTGGTTTGGGGCTTCTAAATTTGTTAATATCTGGTTGTGTCTACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

564

Amino Acids

63.68

Weight (kDa)

9.28

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1463
AccI GTMKAC 2 cut(s) 1451, 1686
AccII CGCG 1 cut(s) 838
AciI CCGC 2 cut(s) 836, 1059
AclWI GGATC 6 cut(s) 69, 153, 360, 814, 827, 1152
AcsI RAATTY 6 cut(s) 124, 214, 1297, 1409, 1441, 1663
AcuI CTGAAG 1 cut(s) 341
AfaI GTAC 3 cut(s) 949, 1005, 1261
AfiI CCNNNNNNNGG 2 cut(s) 944, 1463
AflIII ACRYGT 1 cut(s) 1621
AgsI TTSAA 3 cut(s) 487, 654, 667
AjiI CACGTC 1 cut(s) 1022
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 7 cut(s) 152, 464, 518, 761, 857, 1107, 1250
AluI AGCT 7 cut(s) 152, 464, 518, 761, 857, 1107, 1250
Alw21I GWGCWC 2 cut(s) 795, 1252
Alw26I GTCTC 1 cut(s) 1612
AlwI GGATC 6 cut(s) 69, 153, 360, 814, 827, 1152
Ama87I CYCGRG 1 cut(s) 618
AoxI GGCC 4 cut(s) 250, 295, 333, 1056
ApaI GGGCCC 1 cut(s) 299
ApeKI GCWGC 2 cut(s) 761, 1107
ApoI RAATTY 6 cut(s) 124, 214, 1297, 1409, 1441, 1663
AseI ATTAAT 1 cut(s) 1215
Asp700I GAANNNNTTC 1 cut(s) 891
AspS9I GGNCC 5 cut(s) 6, 295, 296, 333, 1306
AsuC2I CCSGG 1 cut(s) 817
AsuHPI GGTGA 5 cut(s) 128, 214, 634, 748, 929
AsuII TTCGAA 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 618
AvaII GGWCC 2 cut(s) 6, 1306
BaeGI GKGCMC 1 cut(s) 299
BamHI GGATCC 1 cut(s) 819
BanII GRGCYC 4 cut(s) 165, 299, 1244, 1252
BarI GAAGNNNNNNTAC 2 cut(s) 987, 1019
BbsI GAAGAC 1 cut(s) 1289
Bbv12I GWGCWC 2 cut(s) 795, 1252
BbvCI CCTCAGC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 748, 1094
BccI CCATC 4 cut(s) 376, 1019, 1169, 1427
BciVI GTATCC 1 cut(s) 70
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 1 cut(s) 817
BcoDI GTCTC 1 cut(s) 1612
BfaI CTAG 4 cut(s) 407, 708, 798, 1007
BfmI CTRYAG 1 cut(s) 1265
BfuI GTATCC 1 cut(s) 70
BisI GCNGC 3 cut(s) 762, 1059, 1108
BlsI GCNGC 3 cut(s) 763, 1060, 1109
BmcAI AGTACT 1 cut(s) 1261
Bme1390I CCNGG 1 cut(s) 817
Bme18I GGWCC 2 cut(s) 6, 1306
BmeT110I CYCGRG 1 cut(s) 618
BmgBI CACGTC 1 cut(s) 1022
BmgT120I GGNCC 5 cut(s) 6, 295, 296, 333, 1306
BmiI GGNNCC 6 cut(s) 7, 297, 402, 542, 814, 821
BmrFI CCNGG 1 cut(s) 817
BmrI ACTGGG 1 cut(s) 741
BmsI GCATC 1 cut(s) 1495
BmuI ACTGGG 1 cut(s) 741
BpiI GAAGAC 1 cut(s) 1289
Bpu10I CCTNAGC 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 817
BsaBI GATNNNNATC 2 cut(s) 1029, 1143
BsaJI CCNNGG 4 cut(s) 544, 850, 1053, 1591
BsaWI WCCGGW 1 cut(s) 1292
Bsc4I CCNNNNNNNGG 2 cut(s) 944, 1463
Bse1I ACTGG 1 cut(s) 736
Bse3DI GCAATG 2 cut(s) 1468, 1515
Bse8I GATNNNNATC 2 cut(s) 1029, 1143
BseDI CCNNGG 4 cut(s) 544, 850, 1053, 1591
BseGI GGATG 4 cut(s) 432, 1033, 1184, 1438
BseJI GATNNNNATC 2 cut(s) 1029, 1143
BseLI CCNNNNNNNGG 2 cut(s) 944, 1463
BseMI GCAATG 2 cut(s) 1468, 1515
BseMII CTCAG 4 cut(s) 30, 198, 212, 1149
BseNI ACTGG 1 cut(s) 736
BseRI GAGGAG 3 cut(s) 980, 1093, 1499
BseSI GKGCMC 1 cut(s) 299
BseXI GCAGC 2 cut(s) 748, 1094
BsgI GTGCAG 2 cut(s) 513, 747
Bsh1236I CGCG 1 cut(s) 838
BshFI GGCC 4 cut(s) 252, 297, 335, 1058
BsiHKAI GWGCWC 2 cut(s) 795, 1252
BsiHKCI CYCGRG 1 cut(s) 618
BsiSI CCGG 2 cut(s) 817, 1293
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 944, 1463
BsmAI GTCTC 1 cut(s) 1612
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 4 cut(s) 252, 297, 335, 1058
BsoBI CYCGRG 1 cut(s) 618
Bsp119I TTCGAA 1 cut(s) 188
Bsp120I GGGCCC 1 cut(s) 295
Bsp1286I GDGCHC 5 cut(s) 165, 299, 795, 1244, 1252
Bsp143I GATC 6 cut(s) 61, 145, 352, 819, 874, 1144
BspACI CCGC 2 cut(s) 836, 1059
BspANI GGCC 4 cut(s) 252, 297, 335, 1058
BspCNI CTCAG 4 cut(s) 31, 199, 211, 1148
BspFNI CGCG 1 cut(s) 838
BspLI GGNNCC 6 cut(s) 7, 297, 402, 542, 814, 821
BspMAI CTGCAG 1 cut(s) 1269
BspPI GGATC 6 cut(s) 69, 153, 360, 814, 827, 1152
BspT104I TTCGAA 1 cut(s) 188
BsrDI GCAATG 2 cut(s) 1468, 1515
BsrI ACTGG 1 cut(s) 736
BssECI CCNNGG 4 cut(s) 544, 850, 1053, 1591
BssMI GATC 6 cut(s) 61, 145, 352, 819, 874, 1144
BssNAI GTATAC 1 cut(s) 1452
BssT1I CCWWGG 2 cut(s) 1053, 1591
Bst1107I GTATAC 1 cut(s) 1452
Bst4CI ACNGT 8 cut(s) 340, 545, 851, 1003, 1163, 1237, 1369, 1691
BstBI TTCGAA 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 36, 1629
BstDEI CTNAG 6 cut(s) 39, 198, 207, 457, 1113, 1135
BstDSI CCRYGG 2 cut(s) 544, 850
BstF5I GGATG 4 cut(s) 432, 1033, 1184, 1438
BstFNI CGCG 1 cut(s) 838
BstKTI GATC 6 cut(s) 64, 148, 355, 822, 877, 1147
BstMAI GTCTC 1 cut(s) 1612
BstMBI GATC 6 cut(s) 61, 145, 352, 819, 874, 1144
BstMWI GCNNNNNNNGC 1 cut(s) 767
BstNSI RCATGY 3 cut(s) 770, 1625, 1631
BstSCI CCNGG 1 cut(s) 815
BstSFI CTRYAG 1 cut(s) 1265
BstSLI GKGCMC 1 cut(s) 299
BstUI CGCG 1 cut(s) 838
BstV1I GCAGC 2 cut(s) 748, 1094
BstV2I GAAGAC 1 cut(s) 1289
BstX2I RGATCY 3 cut(s) 352, 819, 1144
BstYI RGATCY 3 cut(s) 352, 819, 1144
BstZ17I GTATAC 1 cut(s) 1452
BsuI GTATCC 1 cut(s) 70
BsuRI GGCC 4 cut(s) 252, 297, 335, 1058
BtgI CCRYGG 2 cut(s) 544, 850
BtrI CACGTC 1 cut(s) 1022
BtsCI GGATG 4 cut(s) 432, 1033, 1184, 1438
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 4 cut(s) 336, 440, 501, 1335
Cac8I GCNNGC 2 cut(s) 36, 1629
Cfr13I GGNCC 5 cut(s) 6, 295, 296, 333, 1306
CseI GACGC 1 cut(s) 613
Csp6I GTAC 3 cut(s) 948, 1004, 1260
CviAII CATG 4 cut(s) 767, 1172, 1622, 1628
CviQI GTAC 3 cut(s) 948, 1004, 1260
DdeI CTNAG 6 cut(s) 39, 198, 207, 457, 1113, 1135
DpnI GATC 6 cut(s) 63, 147, 354, 821, 876, 1146
DpnII GATC 6 cut(s) 61, 145, 352, 819, 874, 1144
Ecl136II GAGCTC 1 cut(s) 1250
Eco130I CCWWGG 2 cut(s) 1053, 1591
Eco24I GRGCYC 4 cut(s) 165, 299, 1244, 1252
Eco32I GATATC 1 cut(s) 1031
Eco47I GGWCC 2 cut(s) 6, 1306
Eco53kI GAGCTC 1 cut(s) 1250
Eco57I CTGAAG 1 cut(s) 341
Eco88I CYCGRG 1 cut(s) 618
EcoICRI GAGCTC 1 cut(s) 1250
EcoO109I RGGNCCY 3 cut(s) 6, 295, 1306
EcoRI GAATTC 1 cut(s) 1409
EcoRV GATATC 1 cut(s) 1031
EcoT14I CCWWGG 2 cut(s) 1053, 1591
EcoT38I GRGCYC 4 cut(s) 165, 299, 1244, 1252
ErhI CCWWGG 2 cut(s) 1053, 1591
FaeI CATG 4 cut(s) 770, 1175, 1625, 1631
FaqI GGGAC 1 cut(s) 19
FatI CATG 4 cut(s) 766, 1171, 1621, 1627
FauNDI CATATG 1 cut(s) 1042
FbaI TGATCA 1 cut(s) 874
FblI GTMKAC 2 cut(s) 1451, 1686
Fnu4HI GCNGC 3 cut(s) 762, 1059, 1108
FokI GGATG 4 cut(s) 439, 1020, 1191, 1445
FriOI GRGCYC 4 cut(s) 165, 299, 1244, 1252
Fsp4HI GCNGC 3 cut(s) 762, 1059, 1108
FspBI CTAG 4 cut(s) 407, 708, 798, 1007
GluI GCNGC 3 cut(s) 762, 1059, 1108
HaeIII GGCC 4 cut(s) 252, 297, 335, 1058
HapII CCGG 2 cut(s) 817, 1293
HgaI GACGC 1 cut(s) 613
Hin1II CATG 4 cut(s) 770, 1175, 1625, 1631
HindIII AAGCTT 1 cut(s) 462
HinfI GANTC 8 cut(s) 416, 430, 524, 530, 989, 1139, 1285, 1520
HpaII CCGG 2 cut(s) 817, 1293
HphI GGTGA 5 cut(s) 128, 214, 634, 748, 929
Hpy166II GTNNAC 4 cut(s) 364, 1452, 1469, 1687
Hpy188III TCNNGA 3 cut(s) 179, 407, 521
Hpy8I GTNNAC 4 cut(s) 364, 1452, 1469, 1687
Hpy99I CGWCG 1 cut(s) 1023
HpyAV CCTTC 3 cut(s) 217, 316, 1561
HpyCH4III ACNGT 8 cut(s) 340, 545, 851, 1003, 1163, 1237, 1369, 1691
HpyCH4IV ACGT 1 cut(s) 1021
HpyCH4V TGCA 9 cut(s) 494, 564, 764, 1211, 1267, 1508, 1513, 1627, 1631
HpyF10VI GCNNNNNNNGC 1 cut(s) 767
HpyF3I CTNAG 6 cut(s) 39, 198, 207, 457, 1113, 1135
HpySE526I ACGT 1 cut(s) 1021
Hsp92II CATG 4 cut(s) 770, 1175, 1625, 1631
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 6 cut(s) 61, 145, 352, 819, 874, 1144
LmnI GCTCC 3 cut(s) 838, 854, 1486
Lsp1109I GCAGC 2 cut(s) 748, 1094
LweI GCATC 1 cut(s) 1495
MaeI CTAG 4 cut(s) 407, 708, 798, 1007
MaeII ACGT 1 cut(s) 1021
MaeIII GTNAC 3 cut(s) 202, 845, 917
MalI GATC 6 cut(s) 63, 147, 354, 821, 876, 1146
MboI GATC 6 cut(s) 61, 145, 352, 819, 874, 1144
MfeI CAATTG 1 cut(s) 65
MflI RGATCY 3 cut(s) 352, 819, 1144
MhlI GDGCHC 5 cut(s) 165, 299, 795, 1244, 1252
MlyI GAGTC 1 cut(s) 1279
MmeI TCCRAC 2 cut(s) 54, 518
MroXI GAANNNNTTC 1 cut(s) 891
MseI TTAA 7 cut(s) 288, 468, 642, 750, 1215, 1670, 1693
MslI CAYNNNNRTG 2 cut(s) 1170, 1626
MspI CCGG 2 cut(s) 817, 1293
MspR9I CCNGG 1 cut(s) 817
MunI CAATTG 1 cut(s) 65
MvnI CGCG 1 cut(s) 838
MwoI GCNNNNNNNGC 1 cut(s) 767
NciI CCSGG 1 cut(s) 817
NdeI CATATG 1 cut(s) 1042
NdeII GATC 6 cut(s) 61, 145, 352, 819, 874, 1144
NlaIII CATG 4 cut(s) 770, 1175, 1625, 1631
NlaIV GGNNCC 6 cut(s) 7, 297, 402, 542, 814, 821
NmuCI GTSAC 2 cut(s) 202, 917
NspI RCATGY 3 cut(s) 770, 1625, 1631
NspV TTCGAA 1 cut(s) 188
PaeI GCATGC 1 cut(s) 1631
PciI ACATGT 1 cut(s) 1621
PdmI GAANNNNTTC 1 cut(s) 891
PfeI GAWTC 7 cut(s) 416, 430, 524, 530, 989, 1139, 1520
PflMI CCANNNNNTGG 1 cut(s) 1463
PfoI TCCNGGA 1 cut(s) 815
PkrI GCNGC 3 cut(s) 763, 1060, 1109
PleI GAGTC 1 cut(s) 1279
PpsI GAGTC 1 cut(s) 1279
PpuMI RGGWCCY 2 cut(s) 6, 1306
PscI ACATGT 1 cut(s) 1621
PshBI ATTAAT 1 cut(s) 1215
Psp124BI GAGCTC 1 cut(s) 1252
Psp5II RGGWCCY 2 cut(s) 6, 1306
PspN4I GGNNCC 6 cut(s) 7, 297, 402, 542, 814, 821
PspOMI GGGCCC 1 cut(s) 295
PspPI GGNCC 5 cut(s) 6, 295, 296, 333, 1306
PspPPI RGGWCCY 2 cut(s) 6, 1306
PstI CTGCAG 1 cut(s) 1269
PsuI RGATCY 3 cut(s) 352, 819, 1144
RsaI GTAC 3 cut(s) 949, 1005, 1261
RsaNI GTAC 3 cut(s) 948, 1004, 1260
RseI CAYNNNNRTG 2 cut(s) 1170, 1626
SacI GAGCTC 1 cut(s) 1252
SaqAI TTAA 7 cut(s) 288, 468, 642, 750, 1215, 1670, 1693
SatI GCNGC 3 cut(s) 762, 1059, 1108
Sau3AI GATC 6 cut(s) 61, 145, 352, 819, 874, 1144
Sau96I GGNCC 5 cut(s) 6, 295, 296, 333, 1306
ScaI AGTACT 1 cut(s) 1261
SchI GAGTC 1 cut(s) 1279
ScrFI CCNGG 1 cut(s) 817
SduI GDGCHC 5 cut(s) 165, 299, 795, 1244, 1252
SfaNI GCATC 1 cut(s) 1495
SfcI CTRYAG 1 cut(s) 1265
SfuI TTCGAA 1 cut(s) 188
SinI GGWCC 2 cut(s) 6, 1306
SmiMI CAYNNNNRTG 2 cut(s) 1170, 1626
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
SphI GCATGC 1 cut(s) 1631
SsiI CCGC 2 cut(s) 836, 1059
SspI AATATT 3 cut(s) 47, 691, 958
SspMI CTAG 4 cut(s) 407, 708, 798, 1007
SstI GAGCTC 1 cut(s) 1252
StyD4I CCNGG 1 cut(s) 815
StyI CCWWGG 2 cut(s) 1053, 1591
TaaI ACNGT 8 cut(s) 340, 545, 851, 1003, 1163, 1237, 1369, 1691
TaiI ACGT 1 cut(s) 1024
TaqI TCGA 2 cut(s) 188, 1018
TatI WGTACW 2 cut(s) 1003, 1259
TauI GCSGC 1 cut(s) 1061
TfiI GAWTC 7 cut(s) 416, 430, 524, 530, 989, 1139, 1520
Tru1I TTAA 7 cut(s) 288, 468, 642, 750, 1215, 1670, 1693
Tru9I TTAA 7 cut(s) 288, 468, 642, 750, 1215, 1670, 1693
TscAI CASTG 4 cut(s) 343, 440, 501, 1335
TseFI GTSAC 2 cut(s) 202, 917
TseI GCWGC 2 cut(s) 761, 1107
Tsp45I GTSAC 2 cut(s) 202, 917
TspRI CASTG 4 cut(s) 343, 440, 501, 1335
Van91I CCANNNNNTGG 1 cut(s) 1463
VpaK11BI GGWCC 2 cut(s) 6, 1306
VspI ATTAAT 1 cut(s) 1215
XapI RAATTY 6 cut(s) 124, 214, 1297, 1409, 1441, 1663
XbaI TCTAGA 1 cut(s) 406
XceI RCATGY 3 cut(s) 770, 1625, 1631
XmiI GTMKAC 2 cut(s) 1451, 1686
XmnI GAANNNNTTC 1 cut(s) 891
XspI CTAG 4 cut(s) 407, 708, 798, 1007
ZrmI AGTACT 1 cut(s) 1261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.