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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 624 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 485 |
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AccI | GTMKAC | 1 cut(s) | 1232 |
| AccII | CGCG | 1 cut(s) | 1965 |
| AciI | CCGC | 9 cut(s) | 126, 437, 722, 1729, 1963, 1965, 1972, 1996, 2081 |
| AclWI | GGATC | 5 cut(s) | 73, 608, 621, 776, 789 |
| AcsI | RAATTY | 4 cut(s) | 808, 966, 1021, 1690 |
| AcuI | CTGAAG | 2 cut(s) | 1961, 2036 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 5 cut(s) | 213, 837, 991, 1465, 1862 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1613 |
| AgsI | TTSAA | 9 cut(s) | 203, 937, 971, 1183, 1249, 1664, 1831, 1987, 2071 |
| AhlI | ACTAGT | 1 cut(s) | 208 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 295, 327 |
| AluBI | AGCT | 7 cut(s) | 28, 251, 564, 871, 1323, 1361, 2040 |
| AluI | AGCT | 7 cut(s) | 28, 251, 564, 871, 1323, 1361, 2040 |
| Alw21I | GWGCWC | 2 cut(s) | 1325, 1386 |
| Alw26I | GTCTC | 1 cut(s) | 224 |
| AlwI | GGATC | 5 cut(s) | 73, 608, 621, 776, 789 |
| Ama87I | CYCGRG | 1 cut(s) | 1291 |
| AoxI | GGCC | 2 cut(s) | 1796, 2025 |
| ApeKI | GCWGC | 3 cut(s) | 1361, 1706, 1958 |
| ApoI | RAATTY | 4 cut(s) | 808, 966, 1021, 1690 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 416, 448, 452, 484 |
| AspLEI | GCGC | 1 cut(s) | 7 |
| AspS9I | GGNCC | 3 cut(s) | 1172, 1910, 2026 |
| AvaI | CYCGRG | 1 cut(s) | 1291 |
| AvaII | GGWCC | 2 cut(s) | 1172, 1910 |
| BamHI | GGATCC | 2 cut(s) | 613, 781 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| BanII | GRGCYC | 2 cut(s) | 1061, 1325 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 195, 227, 882, 914 |
| BauI | CACGAG | 1 cut(s) | 1743 |
| BbsI | GAAGAC | 3 cut(s) | 462, 1496, 1554 |
| Bbv12I | GWGCWC | 2 cut(s) | 1325, 1386 |
| BbvI | GCAGC | 3 cut(s) | 1348, 1693, 1970 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1433, 1467 |
| BciVI | GTATCC | 3 cut(s) | 170, 203, 999 |
| BclI | TGATCA | 1 cut(s) | 873 |
| BcoDI | GTCTC | 1 cut(s) | 224 |
| BcuI | ACTAGT | 1 cut(s) | 208 |
| BfaI | CTAG | 4 cut(s) | 209, 902, 1106, 1215 |
| BfmI | CTRYAG | 1 cut(s) | 399 |
| BfoI | RGCGCY | 1 cut(s) | 8 |
| BfuI | GTATCC | 3 cut(s) | 170, 203, 999 |
| BglII | AGATCT | 2 cut(s) | 1165, 1487 |
| BisI | GCNGC | 4 cut(s) | 127, 1362, 1707, 1959 |
| BlsI | GCNGC | 4 cut(s) | 128, 1363, 1708, 1960 |
| Bme18I | GGWCC | 2 cut(s) | 1172, 1910 |
| BmeT110I | CYCGRG | 1 cut(s) | 1291 |
| BmgT120I | GGNCC | 3 cut(s) | 1172, 1910, 2026 |
| BmiI | GGNNCC | 4 cut(s) | 6, 615, 783, 1173 |
| BmsI | GCATC | 1 cut(s) | 1705 |
| BpiI | GAAGAC | 3 cut(s) | 462, 1496, 1554 |
| BpmI | CTGGAG | 2 cut(s) | 1221, 1638 |
| BsaBI | GATNNNNATC | 2 cut(s) | 612, 780 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 3 cut(s) | 256, 1963, 2048 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1613 |
| Bse1I | ACTGG | 2 cut(s) | 843, 2015 |
| Bse3DI | GCAATG | 4 cut(s) | 136, 352, 562, 1009 |
| Bse8I | GATNNNNATC | 2 cut(s) | 612, 780 |
| BseDI | CCNNGG | 3 cut(s) | 256, 1963, 2048 |
| BseJI | GATNNNNATC | 2 cut(s) | 612, 780 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1613 |
| BseMI | GCAATG | 4 cut(s) | 136, 352, 562, 1009 |
| BseMII | CTCAG | 2 cut(s) | 959, 1044 |
| BseNI | ACTGG | 2 cut(s) | 843, 2015 |
| BseRI | GAGGAG | 3 cut(s) | 997, 1394, 1913 |
| BseXI | GCAGC | 3 cut(s) | 1348, 1693, 1970 |
| BsgI | GTGCAG | 3 cut(s) | 97, 175, 208 |
| Bsh1236I | CGCG | 1 cut(s) | 1965 |
| BshFI | GGCC | 2 cut(s) | 1798, 2027 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1325, 1386 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1291 |
| BslFI | GGGAC | 1 cut(s) | 922 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1613 |
| BsmAI | GTCTC | 1 cut(s) | 224 |
| BsmFI | GGGAC | 1 cut(s) | 922 |
| BsnI | GGCC | 2 cut(s) | 1798, 2027 |
| BsoBI | CYCGRG | 1 cut(s) | 1291 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1061, 1325, 1386 |
| Bsp143I | GATC | 7 cut(s) | 65, 307, 613, 781, 873, 1165, 1487 |
| Bsp19I | CCATGG | 2 cut(s) | 256, 2048 |
| BspACI | CCGC | 9 cut(s) | 126, 437, 722, 1729, 1963, 1965, 1972, 1996, 2081 |
| BspANI | GGCC | 2 cut(s) | 1798, 2027 |
| BspCNI | CTCAG | 2 cut(s) | 958, 1045 |
| BspFNI | CGCG | 1 cut(s) | 1965 |
| BspLI | GGNNCC | 4 cut(s) | 6, 615, 783, 1173 |
| BspMAI | CTGCAG | 1 cut(s) | 403 |
| BspPI | GGATC | 5 cut(s) | 73, 608, 621, 776, 789 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BsrDI | GCAATG | 4 cut(s) | 136, 352, 562, 1009 |
| BsrI | ACTGG | 2 cut(s) | 843, 2015 |
| BssECI | CCNNGG | 3 cut(s) | 256, 1963, 2048 |
| BssMI | GATC | 7 cut(s) | 65, 307, 613, 781, 873, 1165, 1487 |
| BssNAI | GTATAC | 1 cut(s) | 1233 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssSI | CACGAG | 1 cut(s) | 1743 |
| BssT1I | CCWWGG | 2 cut(s) | 256, 2048 |
| Bst1107I | GTATAC | 1 cut(s) | 1233 |
| Bst2BI | CACGAG | 1 cut(s) | 1743 |
| Bst4CI | ACNGT | 7 cut(s) | 35, 464, 713, 1069, 1532, 1724, 1764 |
| Bst6I | CTCTTC | 4 cut(s) | 77, 989, 1806, 1937 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstC8I | GCNNGC | 2 cut(s) | 598, 1963 |
| BstDEI | CTNAG | 3 cut(s) | 12, 945, 1053 |
| BstDSI | CCRYGG | 3 cut(s) | 256, 1963, 2048 |
| BstEII | GGTNACC | 1 cut(s) | 1967 |
| BstFNI | CGCG | 1 cut(s) | 1965 |
| BstH2I | RGCGCY | 1 cut(s) | 8 |
| BstHHI | GCGC | 1 cut(s) | 7 |
| BstKTI | GATC | 7 cut(s) | 68, 310, 616, 784, 876, 1168, 1490 |
| BstMAI | GTCTC | 1 cut(s) | 224 |
| BstMBI | GATC | 7 cut(s) | 65, 307, 613, 781, 873, 1165, 1487 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 561, 1715, 1971 |
| BstPI | GGTNACC | 1 cut(s) | 1967 |
| BstSFI | CTRYAG | 1 cut(s) | 399 |
| BstUI | CGCG | 1 cut(s) | 1965 |
| BstV1I | GCAGC | 3 cut(s) | 1348, 1693, 1970 |
| BstV2I | GAAGAC | 3 cut(s) | 462, 1496, 1554 |
| BstX2I | RGATCY | 4 cut(s) | 613, 781, 1165, 1487 |
| BstYI | RGATCY | 4 cut(s) | 613, 781, 1165, 1487 |
| BstZ17I | GTATAC | 1 cut(s) | 1233 |
| BsuI | GTATCC | 3 cut(s) | 170, 203, 999 |
| BsuRI | GGCC | 2 cut(s) | 1798, 2027 |
| BtgI | CCRYGG | 3 cut(s) | 256, 1963, 2048 |
| BtgZI | GCGATG | 1 cut(s) | 615 |
| BtsIMutI | CAGTG | 1 cut(s) | 1729 |
| Cac8I | GCNNGC | 2 cut(s) | 598, 1963 |
| CfoI | GCGC | 1 cut(s) | 7 |
| Cfr13I | GGNCC | 3 cut(s) | 1172, 1910, 2026 |
| Cfr42I | CCGCGG | 1 cut(s) | 1966 |
| Csp6I | GTAC | 5 cut(s) | 212, 836, 990, 1464, 1861 |
| CviAII | CATG | 3 cut(s) | 257, 802, 2049 |
| CviQI | GTAC | 5 cut(s) | 212, 836, 990, 1464, 1861 |
| DdeI | CTNAG | 3 cut(s) | 12, 945, 1053 |
| DinI | GGCGCC | 1 cut(s) | 6 |
| DpnI | GATC | 7 cut(s) | 67, 309, 615, 783, 875, 1167, 1489 |
| DpnII | GATC | 7 cut(s) | 65, 307, 613, 781, 873, 1165, 1487 |
| DraI | TTTAAA | 1 cut(s) | 39 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 485 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 485 |
| Eam1104I | CTCTTC | 4 cut(s) | 77, 989, 1806, 1937 |
| EarI | CTCTTC | 4 cut(s) | 77, 989, 1806, 1937 |
| EciI | GGCGGA | 1 cut(s) | 2070 |
| Ecl136II | GAGCTC | 1 cut(s) | 1323 |
| Eco130I | CCWWGG | 2 cut(s) | 256, 2048 |
| Eco147I | AGGCCT | 1 cut(s) | 1798 |
| Eco24I | GRGCYC | 2 cut(s) | 1061, 1325 |
| Eco47I | GGWCC | 2 cut(s) | 1172, 1910 |
| Eco53kI | GAGCTC | 1 cut(s) | 1323 |
| Eco57I | CTGAAG | 2 cut(s) | 1961, 2036 |
| Eco88I | CYCGRG | 1 cut(s) | 1291 |
| Eco91I | GGTNACC | 1 cut(s) | 1967 |
| EcoICRI | GAGCTC | 1 cut(s) | 1323 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1172 |
| EcoO65I | GGTNACC | 1 cut(s) | 1967 |
| EcoT14I | CCWWGG | 2 cut(s) | 256, 2048 |
| EcoT38I | GRGCYC | 2 cut(s) | 1061, 1325 |
| EgeI | GGCGCC | 1 cut(s) | 6 |
| EheI | GGCGCC | 1 cut(s) | 6 |
| ErhI | CCWWGG | 2 cut(s) | 256, 2048 |
| FaeI | CATG | 3 cut(s) | 260, 805, 2052 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 617, 649 |
| FaqI | GGGAC | 1 cut(s) | 922 |
| FatI | CATG | 3 cut(s) | 256, 801, 2048 |
| FauI | CCCGC | 2 cut(s) | 1970, 1989 |
| FbaI | TGATCA | 1 cut(s) | 873 |
| FblI | GTMKAC | 1 cut(s) | 1232 |
| Fnu4HI | GCNGC | 4 cut(s) | 127, 1362, 1707, 1959 |
| FriOI | GRGCYC | 2 cut(s) | 1061, 1325 |
| Fsp4HI | GCNGC | 4 cut(s) | 127, 1362, 1707, 1959 |
| FspBI | CTAG | 4 cut(s) | 209, 902, 1106, 1215 |
| GlaI | GCGC | 1 cut(s) | 6 |
| GluI | GCNGC | 4 cut(s) | 127, 1362, 1707, 1959 |
| GsuI | CTGGAG | 2 cut(s) | 1221, 1638 |
| HaeII | RGCGCY | 1 cut(s) | 8 |
| HaeIII | GGCC | 2 cut(s) | 1798, 2027 |
| HhaI | GCGC | 1 cut(s) | 7 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 3 cut(s) | 260, 805, 2052 |
| Hin6I | GCGC | 1 cut(s) | 5 |
| HinP1I | GCGC | 1 cut(s) | 5 |
| HincII | GTYRAC | 3 cut(s) | 382, 490, 526 |
| HindII | GTYRAC | 3 cut(s) | 382, 490, 526 |
| HindIII | AAGCTT | 1 cut(s) | 2038 |
| HinfI | GANTC | 7 cut(s) | 1039, 1112, 1474, 1786, 1840, 1987, 2057 |
| HpaI | GTTAAC | 1 cut(s) | 526 |
| Hpy166II | GTNNAC | 7 cut(s) | 382, 490, 526, 703, 1233, 1422, 1574 |
| Hpy188I | TCNGA | 5 cut(s) | 316, 868, 1684, 1910, 2089 |
| Hpy188III | TCNNGA | 9 cut(s) | 238, 617, 1043, 1106, 1238, 1655, 1745, 1828, 1939 |
| Hpy8I | GTNNAC | 7 cut(s) | 382, 490, 526, 703, 1233, 1422, 1574 |
| HpyAV | CCTTC | 4 cut(s) | 37, 197, 1815, 1923 |
| HpyCH4III | ACNGT | 7 cut(s) | 35, 464, 713, 1069, 1532, 1724, 1764 |
| HpyCH4IV | ACGT | 2 cut(s) | 384, 528 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 561, 1715, 1971 |
| HpyF3I | CTNAG | 3 cut(s) | 12, 945, 1053 |
| HpySE526I | ACGT | 2 cut(s) | 384, 528 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 3 cut(s) | 260, 805, 2052 |
| HspAI | GCGC | 1 cut(s) | 5 |
| KasI | GGCGCC | 1 cut(s) | 4 |
| Ksp22I | TGATCA | 1 cut(s) | 873 |
| KspAI | GTTAAC | 1 cut(s) | 526 |
| KspI | CCGCGG | 1 cut(s) | 1966 |
| Kzo9I | GATC | 7 cut(s) | 65, 307, 613, 781, 873, 1165, 1487 |
| LmnI | GCTCC | 2 cut(s) | 1320, 1381 |
| Lsp1109I | GCAGC | 3 cut(s) | 1348, 1693, 1970 |
| LweI | GCATC | 1 cut(s) | 1705 |
| MaeI | CTAG | 4 cut(s) | 209, 902, 1106, 1215 |
| MaeII | ACGT | 2 cut(s) | 384, 528 |
| MaeIII | GTNAC | 5 cut(s) | 94, 476, 1048, 1837, 1967 |
| MalI | GATC | 7 cut(s) | 67, 309, 615, 783, 875, 1167, 1489 |
| MboI | GATC | 7 cut(s) | 65, 307, 613, 781, 873, 1165, 1487 |
| MflI | RGATCY | 4 cut(s) | 613, 781, 1165, 1487 |
| MhlI | GDGCHC | 3 cut(s) | 1061, 1325, 1386 |
| Mly113I | GGCGCC | 1 cut(s) | 5 |
| MlyI | GAGTC | 3 cut(s) | 1483, 1834, 2051 |
| MmeI | TCCRAC | 1 cut(s) | 829 |
| MslI | CAYNNNNRTG | 1 cut(s) | 261 |
| MspA1I | CMGCKG | 1 cut(s) | 1965 |
| MvnI | CGCG | 1 cut(s) | 1965 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 561, 1715, 1971 |
| NarI | GGCGCC | 1 cut(s) | 5 |
| NcoI | CCATGG | 2 cut(s) | 256, 2048 |
| NdeII | GATC | 7 cut(s) | 65, 307, 613, 781, 873, 1165, 1487 |
| NlaIII | CATG | 3 cut(s) | 260, 805, 2052 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 615, 783, 1173 |
| NmuCI | GTSAC | 5 cut(s) | 94, 476, 1048, 1837, 1967 |
| PceI | AGGCCT | 1 cut(s) | 1798 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 307 |
| PfeI | GAWTC | 4 cut(s) | 1039, 1112, 1786, 1987 |
| PkrI | GCNGC | 4 cut(s) | 128, 1363, 1708, 1960 |
| PleI | GAGTC | 3 cut(s) | 1482, 1834, 2051 |
| PluTI | GGCGCC | 1 cut(s) | 8 |
| PpsI | GAGTC | 3 cut(s) | 1482, 1834, 2051 |
| PpuMI | RGGWCCY | 1 cut(s) | 1172 |
| PsiI | TTATAA | 1 cut(s) | 624 |
| Psp124BI | GAGCTC | 1 cut(s) | 1325 |
| Psp5II | RGGWCCY | 1 cut(s) | 1172 |
| PspEI | GGTNACC | 1 cut(s) | 1967 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 615, 783, 1173 |
| PspPI | GGNCC | 3 cut(s) | 1172, 1910, 2026 |
| PspPPI | RGGWCCY | 1 cut(s) | 1172 |
| PstI | CTGCAG | 1 cut(s) | 403 |
| PsuI | RGATCY | 4 cut(s) | 613, 781, 1165, 1487 |
| RsaI | GTAC | 5 cut(s) | 213, 837, 991, 1465, 1862 |
| RsaNI | GTAC | 5 cut(s) | 212, 836, 990, 1464, 1861 |
| RseI | CAYNNNNRTG | 1 cut(s) | 261 |
| SacI | GAGCTC | 1 cut(s) | 1325 |
| SacII | CCGCGG | 1 cut(s) | 1966 |
| SatI | GCNGC | 4 cut(s) | 127, 1362, 1707, 1959 |
| Sau3AI | GATC | 7 cut(s) | 65, 307, 613, 781, 873, 1165, 1487 |
| Sau96I | GGNCC | 3 cut(s) | 1172, 1910, 2026 |
| SchI | GAGTC | 3 cut(s) | 1483, 1834, 2051 |
| SduI | GDGCHC | 3 cut(s) | 1061, 1325, 1386 |
| SfaNI | GCATC | 1 cut(s) | 1705 |
| SfcI | CTRYAG | 1 cut(s) | 399 |
| SfoI | GGCGCC | 1 cut(s) | 6 |
| Sfr303I | CCGCGG | 1 cut(s) | 1966 |
| SgrBI | CCGCGG | 1 cut(s) | 1966 |
| SinI | GGWCC | 2 cut(s) | 1172, 1910 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 261 |
| SpeI | ACTAGT | 1 cut(s) | 208 |
| SseBI | AGGCCT | 1 cut(s) | 1798 |
| SsiI | CCGC | 9 cut(s) | 126, 437, 722, 1729, 1963, 1965, 1972, 1996, 2081 |
| SspDI | GGCGCC | 1 cut(s) | 4 |
| SspI | AATATT | 1 cut(s) | 1253 |
| SspMI | CTAG | 4 cut(s) | 209, 902, 1106, 1215 |
| SstI | GAGCTC | 1 cut(s) | 1325 |
| StuI | AGGCCT | 1 cut(s) | 1798 |
| StyI | CCWWGG | 2 cut(s) | 256, 2048 |
| TaaI | ACNGT | 7 cut(s) | 35, 464, 713, 1069, 1532, 1724, 1764 |
| TaiI | ACGT | 2 cut(s) | 387, 531 |
| TaqI | TCGA | 2 cut(s) | 1042, 1325 |
| TatI | WGTACW | 2 cut(s) | 835, 1463 |
| TauI | GCSGC | 1 cut(s) | 129 |
| TfiI | GAWTC | 4 cut(s) | 1039, 1112, 1786, 1987 |
| TscAI | CASTG | 1 cut(s) | 1729 |
| TseFI | GTSAC | 5 cut(s) | 94, 476, 1048, 1837, 1967 |
| TseI | GCWGC | 3 cut(s) | 1361, 1706, 1958 |
| Tsp45I | GTSAC | 5 cut(s) | 94, 476, 1048, 1837, 1967 |
| TspGWI | ACGGA | 2 cut(s) | 316, 1018 |
| TspRI | CASTG | 1 cut(s) | 1729 |
| VpaK11BI | GGWCC | 2 cut(s) | 1172, 1910 |
| XapI | RAATTY | 4 cut(s) | 808, 966, 1021, 1690 |
| XbaI | TCTAGA | 1 cut(s) | 1105 |
| XmiI | GTMKAC | 1 cut(s) | 1232 |
| XspI | CTAG | 4 cut(s) | 209, 902, 1106, 1215 |