Rh6DG378000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000931
Physical Location & Seq
Reverse (-)
57224598 .. 57227886
3289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG378000.1

Sequence Viewer

Length: 1674 bp
ATGGGGCCGGGTTCGGGGAGAAAGGTCATCAATTTAGAGGGAAGTGATGGTGAATTGGATGAGAGGACTGAGAGGCGTTTGAGGAGAAGGGGTTTAGCTAATGGAATTTACAATCCCAATTTGCGTCGCAGTACCCCGAAGAAAAGCAAAAAGTGTAATGCACAAGTGGAGAACCTAATGTTGGATAAGGATTATGAGAAATACCTGAGTTTGATTCAGCGGGGTGGGGACTTGAATGAACATTCTAGTGATCACGGTGTTAATGGGGATTGCGAGAATGAACATAATGATGATGGGAATGGACATTGTACTGGTGAAAATAATGATATTAGGTCTGTGGACGGTGATGAAAACAAGCATTCTGTTGATGACAATAATGATGCCAGGGTTGTGGATGGTAGTGGGAGCAAACATTCTGTTGATGATACTGTCAACTTGAAGTCTGTGGATCACGGTGGTGGTAGGAATGGACGATGTGGCGTGGATGATGGTGATGGTGGGAATGCTCATTTTGGTGATGGCAACATTCATGTTAATTCTTTGAATCATGGCGTTGATGATGATGATATGGATCCTCAGTATAAGATATTCTGGGACAATTTGAAGGAAGATGGAAATTCATACGTACTGGAGATGGTTCAAGAGGATGGACGTGTGAAACAGATAAGGTATCACCAAGGCGATGGTTTACCTGATGAGCTCGATCTAGATGCCATGCATTCCCAGGGGAAACAGAAGACTAAATTTAAAAACAGGGAGACTATGGCAAATTTAGAGGATGCCCCAAAGAAAAGGTTTTCAGTGAAGAAGAGGAATGTAAAATTGGAAGCTCTGGAACCTGTTTCAGATGGAACAAATGTGTGTTCTAGTAAACGACCTCGTTTAGAGGTTCCAAACACTCCAAAAAGTTTAGGAAGTTCTCCGCAGAAAGAGAAAACTGAGACTAGAAGAAATTCAAGGAGTGTCATTAAGAAGAGAAATTTAGAGGATCGTCCAGAGAAAAAGAATGGTCTTGAGAAAAAGAGTTCAATGTTGAAGAAGAATGTGAAGGAAGCAGATGCAGATCCTCTTTCTGGTAGAACAAATGGGCGTTCTCATAAACAGTCTGGTTCAAAATATCTTCGGTTCTCAGAGGGTGGGTGCAATAGTGAAGCTGAATCTGATTCTAATCTAACAGATGACAGCTATCAAGAGTTCTTAAGTTGTACTAAGGATGATGGGAAAGTTATGGTATTTACATCCAGAATTTGTGGACCATTAATATATGATTCAGATGAAGAAAGTTCATCGGATTCAGATGTGATCGTGCTCGACAGGGATCCACATGAGGGATACCGTACACCAATTAAGATTGATGTAGACAGTCGGCGGTCCACTGAAAGTCATTCCCAGTTTAGGCAAGGGATTATGCAGGATCTTAAAAGGCCTTACCACCTGGAAGAGTATACCAATCTCTTGGAAGACTGGTCTCGCCAAAGGGCAGCCACAGGTCATGATAGAAATCTGCGAAATGGAAATGTAAAATCATATGCACTGCCGGGGGAATTTGGGAAATCATATCAAGAGATGTACAGAGATCTGGCAGGAAAGATTCATGCAGTGACAGGCGATGATCGCCCTAGAAAGTTAAATCTTTTGCGTGGATTTTTCTACTGGTTGAAGGTAAGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

557

Amino Acids

62.68

Weight (kDa)

6.18

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 1359, 1445
AciI CCGC 3 cut(s) 220, 923, 1369
AclWI GGATC 8 cut(s) 456, 566, 579, 996, 1058, 1313, 1326, 1422
AcsI RAATTY 8 cut(s) 105, 616, 743, 769, 952, 979, 1245, 1544
AfaI GTAC 6 cut(s) 133, 310, 627, 1207, 1339, 1571
AfiI CCNNNNNNNGG 5 cut(s) 14, 181, 1073, 1328, 1395
AflII CTTAAG 1 cut(s) 1198
AflIII ACRYGT 1 cut(s) 652
AjiI CACGTC 1 cut(s) 653
AjnI CCWGG 3 cut(s) 383, 723, 1434
AjuI GAANNNNNNNTTGG 4 cut(s) 164, 196, 806, 838
AleI CACNNNNGTG 1 cut(s) 456
AluBI AGCT 5 cut(s) 98, 700, 830, 1154, 1185
AluI AGCT 5 cut(s) 98, 700, 830, 1154, 1185
Alw21I GWGCWC 2 cut(s) 702, 1311
Alw26I GTCTC 3 cut(s) 752, 935, 1473
AlwI GGATC 8 cut(s) 456, 566, 579, 996, 1058, 1313, 1326, 1422
AoxI GGCC 2 cut(s) 5, 1424
ApeKI GCWGC 1 cut(s) 1481
ApoI RAATTY 8 cut(s) 105, 616, 743, 769, 952, 979, 1245, 1544
AseI ATTAAT 1 cut(s) 1259
Asp700I GAANNNNTTC 1 cut(s) 952
AspS9I GGNCC 3 cut(s) 5, 1253, 1371
AsuC2I CCSGG 2 cut(s) 9, 1539
AsuHPI GGTGA 6 cut(s) 62, 326, 356, 503, 527, 665
AvaII GGWCC 2 cut(s) 1253, 1371
BamHI GGATCC 2 cut(s) 571, 1318
BanII GRGCYC 1 cut(s) 702
BbsI GAAGAC 2 cut(s) 743, 1467
Bbv12I GWGCWC 2 cut(s) 702, 1311
BbvI GCAGC 1 cut(s) 1493
BcgI CGANNNNNNTGC 2 cut(s) 692, 726
BciT130I CCWGG 3 cut(s) 385, 725, 1436
BciVI GTATCC 1 cut(s) 1325
BclI TGATCA 1 cut(s) 250
BcnI CCSGG 2 cut(s) 9, 1539
BcoDI GTCTC 3 cut(s) 752, 935, 1473
BfaI CTAG 5 cut(s) 246, 707, 867, 945, 1620
BfrI CTTAAG 1 cut(s) 1198
BfuI GTATCC 1 cut(s) 1325
BglII AGATCT 1 cut(s) 1576
BisI GCNGC 1 cut(s) 1482
BlsI GCNGC 1 cut(s) 1483
Bme1390I CCNGG 5 cut(s) 9, 385, 725, 1436, 1539
Bme18I GGWCC 2 cut(s) 1253, 1371
BmgBI CACGTC 1 cut(s) 653
BmgT120I GGNCC 3 cut(s) 5, 1253, 1371
BmiI GGNNCC 5 cut(s) 6, 573, 837, 891, 1320
BmrFI CCNGG 5 cut(s) 9, 385, 725, 1436, 1539
BmrI ACTGGG 1 cut(s) 1384
BmsI GCATC 4 cut(s) 370, 700, 769, 1048
BmuI ACTGGG 1 cut(s) 1384
BpiI GAAGAC 2 cut(s) 743, 1467
BpmI CTGGAG 1 cut(s) 650
BpuEI CTTGAG 1 cut(s) 1034
BpuMI CCSGG 2 cut(s) 9, 1539
BsaAI YACGTR 1 cut(s) 625
BsaBI GATNNNNATC 4 cut(s) 570, 1062, 1167, 1500
BsaI GGTCTC 1 cut(s) 1473
BsaJI CCNNGG 5 cut(s) 384, 676, 723, 724, 1538
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 5 cut(s) 14, 181, 1073, 1328, 1395
Bse1I ACTGG 5 cut(s) 316, 633, 1390, 1469, 1658
Bse8I GATNNNNATC 4 cut(s) 570, 1062, 1167, 1500
BseBI CCWGG 3 cut(s) 385, 725, 1436
BseDI CCNNGG 5 cut(s) 384, 676, 723, 724, 1538
BseGI GGATG 7 cut(s) 64, 400, 490, 652, 784, 1219, 1238
BseJI GATNNNNATC 4 cut(s) 570, 1062, 1167, 1500
BseLI CCNNNNNNNGG 5 cut(s) 14, 181, 1073, 1328, 1395
BseMII CTCAG 5 cut(s) 60, 197, 590, 930, 1143
BseNI ACTGG 5 cut(s) 316, 633, 1390, 1469, 1658
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 1493
BshFI GGCC 2 cut(s) 7, 1426
BsiHKAI GWGCWC 2 cut(s) 702, 1311
BsiSI CCGG 2 cut(s) 8, 1538
BslFI GGGAC 2 cut(s) 242, 608
BslI CCNNNNNNNGG 5 cut(s) 14, 181, 1073, 1328, 1395
BsmAI GTCTC 3 cut(s) 752, 935, 1473
BsmFI GGGAC 2 cut(s) 242, 608
BsmI GAATGC 3 cut(s) 358, 508, 718
BsnI GGCC 2 cut(s) 7, 1426
Bso31I GGTCTC 1 cut(s) 1473
Bsp1286I GDGCHC 2 cut(s) 702, 1311
Bsp1407I TGTACA 1 cut(s) 1569
BspACI CCGC 3 cut(s) 220, 923, 1369
BspANI GGCC 2 cut(s) 7, 1426
BspCNI CTCAG 5 cut(s) 61, 198, 589, 931, 1142
BspHI TCATGA 1 cut(s) 1492
BspLI GGNNCC 5 cut(s) 6, 573, 837, 891, 1320
BspPI GGATC 8 cut(s) 456, 566, 579, 996, 1058, 1313, 1326, 1422
BspTI CTTAAG 1 cut(s) 1198
BspTNI GGTCTC 1 cut(s) 1473
BsrGI TGTACA 1 cut(s) 1569
BsrI ACTGG 5 cut(s) 316, 633, 1390, 1469, 1658
BssECI CCNNGG 5 cut(s) 384, 676, 723, 724, 1538
BssNAI GTATAC 1 cut(s) 1446
BssT1I CCWWGG 1 cut(s) 676
Bst1107I GTATAC 1 cut(s) 1446
Bst2UI CCWGG 3 cut(s) 385, 725, 1436
Bst4CI ACNGT 7 cut(s) 257, 344, 430, 455, 1104, 1337, 1364
Bst6I CTCTTC 3 cut(s) 803, 968, 1434
BstAFI CTTAAG 1 cut(s) 1198
BstAUI TGTACA 1 cut(s) 1569
BstBAI YACGTR 1 cut(s) 625
BstDEI CTNAG 6 cut(s) 69, 206, 576, 939, 1129, 1209
BstF5I GGATG 7 cut(s) 64, 400, 490, 652, 784, 1219, 1238
BstMAI GTCTC 3 cut(s) 752, 935, 1473
BstMWI GCNNNNNNNGC 1 cut(s) 1614
BstNI CCWGG 3 cut(s) 385, 725, 1436
BstSCI CCNGG 5 cut(s) 7, 383, 723, 1434, 1537
BstSNI TACGTA 1 cut(s) 625
BstV1I GCAGC 1 cut(s) 1493
BstV2I GAAGAC 2 cut(s) 743, 1467
BstX2I RGATCY 5 cut(s) 571, 1063, 1318, 1414, 1576
BstXI CCANNNNNNTGG 3 cut(s) 391, 683, 1456
BstYI RGATCY 5 cut(s) 571, 1063, 1318, 1414, 1576
BstZ17I GTATAC 1 cut(s) 1446
BsuI GTATCC 1 cut(s) 1325
BsuRI GGCC 2 cut(s) 7, 1426
BtgZI GCGATG 2 cut(s) 696, 1623
BtrI CACGTC 1 cut(s) 653
BtsCI GGATG 7 cut(s) 64, 400, 490, 652, 784, 1219, 1238
BtsI GCAGTG 2 cut(s) 1532, 1605
BtsIMutI CAGTG 4 cut(s) 807, 1374, 1532, 1605
CciI TCATGA 1 cut(s) 1492
Cfr13I GGNCC 3 cut(s) 5, 1253, 1371
CseI GACGC 1 cut(s) 113
Csp6I GTAC 6 cut(s) 132, 309, 626, 1206, 1338, 1570
CviAII CATG 6 cut(s) 530, 548, 715, 1325, 1493, 1595
CviJI RGCY 8 cut(s) 7, 98, 700, 830, 1154, 1185, 1426, 1484
CviKI_1 RGCY 8 cut(s) 7, 98, 700, 830, 1154, 1185, 1426, 1484
CviQI GTAC 6 cut(s) 132, 309, 626, 1206, 1338, 1570
DdeI CTNAG 6 cut(s) 69, 206, 576, 939, 1129, 1209
DraI TTTAAA 1 cut(s) 748
Eam1104I CTCTTC 3 cut(s) 803, 968, 1434
EarI CTCTTC 3 cut(s) 803, 968, 1434
Ecl136II GAGCTC 1 cut(s) 700
Eco105I TACGTA 1 cut(s) 625
Eco130I CCWWGG 1 cut(s) 676
Eco147I AGGCCT 1 cut(s) 1426
Eco24I GRGCYC 1 cut(s) 702
Eco31I GGTCTC 1 cut(s) 1473
Eco47I GGWCC 2 cut(s) 1253, 1371
Eco53kI GAGCTC 1 cut(s) 700
EcoICRI GAGCTC 1 cut(s) 700
EcoRII CCWGG 3 cut(s) 383, 723, 1434
EcoT14I CCWWGG 1 cut(s) 676
EcoT22I ATGCAT 1 cut(s) 720
EcoT38I GRGCYC 1 cut(s) 702
ErhI CCWWGG 1 cut(s) 676
FaeI CATG 6 cut(s) 533, 551, 718, 1328, 1496, 1598
FaqI GGGAC 2 cut(s) 242, 608
FatI CATG 6 cut(s) 529, 547, 714, 1324, 1492, 1594
FauI CCCGC 1 cut(s) 213
FauNDI CATATG 1 cut(s) 1528
FbaI TGATCA 1 cut(s) 250
FblI GTMKAC 2 cut(s) 1359, 1445
Fnu4HI GCNGC 1 cut(s) 1482
FokI GGATG 7 cut(s) 71, 407, 497, 659, 791, 1225, 1226
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 1 cut(s) 1482
FspBI CTAG 5 cut(s) 246, 707, 867, 945, 1620
GluI GCNGC 1 cut(s) 1482
GsuI CTGGAG 1 cut(s) 650
HaeIII GGCC 2 cut(s) 7, 1426
HapII CCGG 2 cut(s) 8, 1538
HgaI GACGC 1 cut(s) 113
Hin1II CATG 6 cut(s) 533, 551, 718, 1328, 1496, 1598
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 7 cut(s) 214, 544, 1157, 1163, 1268, 1292, 1591
HpaII CCGG 2 cut(s) 8, 1538
HphI GGTGA 6 cut(s) 62, 326, 356, 503, 527, 665
Hpy166II GTNNAC 9 cut(s) 340, 433, 689, 872, 1253, 1340, 1360, 1374, 1446
Hpy188I TCNGA 6 cut(s) 847, 1132, 1162, 1273, 1291, 1297
Hpy188III TCNNGA 9 cut(s) 641, 707, 833, 995, 1013, 1190, 1242, 1493, 1562
Hpy8I GTNNAC 9 cut(s) 340, 433, 689, 872, 1253, 1340, 1360, 1374, 1446
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 4 cut(s) 81, 598, 1042, 1654
HpyCH4III ACNGT 7 cut(s) 257, 344, 430, 455, 1104, 1337, 1364
HpyCH4IV ACGT 2 cut(s) 624, 652
HpyCH4V TGCA 7 cut(s) 161, 718, 1061, 1143, 1411, 1532, 1598
HpyF10VI GCNNNNNNNGC 1 cut(s) 1614
HpyF3I CTNAG 6 cut(s) 69, 206, 576, 939, 1129, 1209
HpySE526I ACGT 2 cut(s) 624, 652
Hsp92II CATG 6 cut(s) 533, 551, 718, 1328, 1496, 1598
Ksp22I TGATCA 1 cut(s) 250
LmnI GCTCC 1 cut(s) 405
Lsp1109I GCAGC 1 cut(s) 1493
LweI GCATC 4 cut(s) 370, 700, 769, 1048
MaeI CTAG 5 cut(s) 246, 707, 867, 945, 1620
MaeII ACGT 2 cut(s) 624, 652
MaeIII GTNAC 1 cut(s) 1600
MflI RGATCY 5 cut(s) 571, 1063, 1318, 1414, 1576
MhlI GDGCHC 2 cut(s) 702, 1311
MmeI TCCRAC 1 cut(s) 162
Mph1103I ATGCAT 1 cut(s) 720
MroXI GAANNNNTTC 1 cut(s) 952
MseI TTAA 9 cut(s) 261, 534, 747, 969, 1199, 1259, 1347, 1419, 1628
MslI CAYNNNNRTG 4 cut(s) 246, 288, 456, 513
MspA1I CMGCKG 1 cut(s) 220
MspCI CTTAAG 1 cut(s) 1198
MspI CCGG 2 cut(s) 8, 1538
MspR9I CCNGG 5 cut(s) 9, 385, 725, 1436, 1539
Mva1269I GAATGC 3 cut(s) 358, 508, 718
MvaI CCWGG 3 cut(s) 385, 725, 1436
MwoI GCNNNNNNNGC 1 cut(s) 1614
NciI CCSGG 2 cut(s) 9, 1539
NdeI CATATG 1 cut(s) 1528
NlaIII CATG 6 cut(s) 533, 551, 718, 1328, 1496, 1598
NlaIV GGNNCC 5 cut(s) 6, 573, 837, 891, 1320
NmuCI GTSAC 1 cut(s) 1600
NsiI ATGCAT 1 cut(s) 720
OliI CACNNNNGTG 1 cut(s) 456
PagI TCATGA 1 cut(s) 1492
PasI CCCWGGG 1 cut(s) 724
PceI AGGCCT 1 cut(s) 1426
PctI GAATGC 3 cut(s) 358, 508, 718
PdmI GAANNNNTTC 1 cut(s) 952
PfeI GAWTC 7 cut(s) 214, 544, 1157, 1163, 1268, 1292, 1591
PkrI GCNGC 1 cut(s) 1483
Ppu21I YACGTR 1 cut(s) 625
PshBI ATTAAT 1 cut(s) 1259
Psp124BI GAGCTC 1 cut(s) 702
Psp6I CCWGG 3 cut(s) 383, 723, 1434
PspGI CCWGG 3 cut(s) 383, 723, 1434
PspN4I GGNNCC 5 cut(s) 6, 573, 837, 891, 1320
PspPI GGNCC 3 cut(s) 5, 1253, 1371
PsuI RGATCY 5 cut(s) 571, 1063, 1318, 1414, 1576
RsaI GTAC 6 cut(s) 133, 310, 627, 1207, 1339, 1571
RsaNI GTAC 6 cut(s) 132, 309, 626, 1206, 1338, 1570
RseI CAYNNNNRTG 4 cut(s) 246, 288, 456, 513
SacI GAGCTC 1 cut(s) 702
SaqAI TTAA 9 cut(s) 261, 534, 747, 969, 1199, 1259, 1347, 1419, 1628
SatI GCNGC 1 cut(s) 1482
Sau96I GGNCC 3 cut(s) 5, 1253, 1371
ScrFI CCNGG 5 cut(s) 9, 385, 725, 1436, 1539
SduI GDGCHC 2 cut(s) 702, 1311
SfaNI GCATC 4 cut(s) 370, 700, 769, 1048
SinI GGWCC 2 cut(s) 1253, 1371
SmiMI CAYNNNNRTG 4 cut(s) 246, 288, 456, 513
SmlI CTYRAG 2 cut(s) 1013, 1198
SmoI CTYRAG 2 cut(s) 1013, 1198
SnaBI TACGTA 1 cut(s) 625
SseBI AGGCCT 1 cut(s) 1426
SsiI CCGC 3 cut(s) 220, 923, 1369
SspMI CTAG 5 cut(s) 246, 707, 867, 945, 1620
SstI GAGCTC 1 cut(s) 702
StuI AGGCCT 1 cut(s) 1426
StyD4I CCNGG 5 cut(s) 7, 383, 723, 1434, 1537
StyI CCWWGG 1 cut(s) 676
TaaI ACNGT 7 cut(s) 257, 344, 430, 455, 1104, 1337, 1364
TaiI ACGT 2 cut(s) 627, 655
TaqI TCGA 2 cut(s) 702, 1311
TatI WGTACW 3 cut(s) 308, 1205, 1569
TfiI GAWTC 7 cut(s) 214, 544, 1157, 1163, 1268, 1292, 1591
Tru1I TTAA 9 cut(s) 261, 534, 747, 969, 1199, 1259, 1347, 1419, 1628
Tru9I TTAA 9 cut(s) 261, 534, 747, 969, 1199, 1259, 1347, 1419, 1628
TscAI CASTG 4 cut(s) 807, 1381, 1539, 1605
TseFI GTSAC 1 cut(s) 1600
TseI GCWGC 1 cut(s) 1481
Tsp45I GTSAC 1 cut(s) 1600
TspDTI ATGAA 8 cut(s) 252, 294, 363, 518, 609, 1275, 1290, 1583
TspRI CASTG 4 cut(s) 807, 1381, 1539, 1605
Vha464I CTTAAG 1 cut(s) 1198
VpaK11BI GGWCC 2 cut(s) 1253, 1371
VspI ATTAAT 1 cut(s) 1259
XapI RAATTY 8 cut(s) 105, 616, 743, 769, 952, 979, 1245, 1544
XbaI TCTAGA 1 cut(s) 706
XmiI GTMKAC 2 cut(s) 1359, 1445
XmnI GAANNNNTTC 1 cut(s) 952
XspI CTAG 5 cut(s) 246, 707, 867, 945, 1620
Zsp2I ATGCAT 1 cut(s) 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.