Rroxscaffold_7G00171140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000931
Physical Location & Seq
Forward (+)
11488540 .. 11494182
5643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00171140.1

Sequence Viewer

Length: 1758 bp
ATGGGGCCGGGTTCGGGGAGAAAGGTCATCGATTTAGAGGGAGGTGATTGTGAATTGGATGAGAGGACTGAGAGGCGTTTGAGGAGAAGGGGTATAGCTAATGGAATTTACAACCCCAATTTGCGTCGCAGTACCCCGAAGAAAAGTAAAAAGTGTAATGCACAAGTGGGGAACCTGATGTTGGATAAGGATTATGAGAAATACCTGAGTTTGATTCAGCGGGGTAGGGACTTGAATGAACATTCTAGTGATCATGGTGTTAATGGGGATTGCGAGAATGAACATAATGATGATGGGAATGAACATTGTACTCGTGAAAATAATGATATTAGGTCTGTGGACGGTGATGAAAACAAGCATTCTGTTGATGACAATAATGATGCCAGGGTTGTGGATGGTAGTGGGTGCGAACATTCTGTTGATGGTACTGTCAACTTGAAGTCTGTGGATCACGGTGGTGGTAGGAATGGACGATGTGGCGTGGATGATGGTGATGGTGGGAATGCTCATTTTGGTGATGGCAACATTCATGTTAATTCTTTGAATCATGGCGTTGATGATGATGATATGGATCCTCAGTATAAGATATTCTGGGACAATTTGAAGGAAGATGGAAATTCATACGTACTGGAGATGGTTCAAGAGGATGGACGTGTGAAGCAGATAAGGTATCACCAAGGCGATGGTTTACCTGACGAGCTCGATCTAGATGCCACGCATTCCCAGGGGAAACAGAAGACTGAATTTAAAAACAGGGAGACTATGGAAAAGTTAGAGGATGCCCCAGATAAAAGGTTTTCAGTGAAGAAGAGGAATGTCAAATTGGAAGCTCTGGAACCTATTTCAGATGGAACAAATGTGTGTTCTAGTAAGCGACCTCGTTTAGAGGTTCCAAACTGTCCAAAAAGTTTAGGAAGTTCTCCACAGAAAGAGAAAACTGAAACTAGAAGAAATTCAAGGAGTGTCATTAAGAAGAGAAATTTACAGGATCGTCCAGAGAAAAAGAATGGTCTTGAGAAAAAGAGTTCAATGTTGAAGAAGAATGTGAAGGAAGCAGATGCAGATCCTCTTTCTGGTAGAACAAATGGGCGTTCTCATAAACAGTCTGGTTCAAAATATCTTCGGTTCTCAGAGGGTGGGTGCAATAGTGAAGCTGAATCTGATTCTAATCAAACAGAGGACAGCTATCAAGAGTTCTTAAGTTGTACTAGGGATGATGGGAAAGTTATGGTATTTACATCCAGAATTTGTGGACCATTAATATATGATTCAGATGAAGAAAGTTCATCGGATTCAGATGTGATCGTGCTCGACAGGGATCCACATGAGGGATACCGTACACCAATTAAGATTGATGTAGACAGTCGGCGGTCCACTGAAAGTCATTCCCAGTTTAGGCAAGGGATTATGCAGGATCTTAAAAGGCCTTACCACCTAGAAGAGTATCTCAATCTCTTGGAAGACTGGTCTCGCCAAAGGGCAGCCGCAGGTCATGATAGAAATCTGCGAAATGGAAATGTAAAATCATATGCACTGCCGGGGGAATTTGGAAAATCATATCAAGAGATGTACAGAGTCGATGATCTGGCAGGAAAGATTGATGCAGTGACAGGCGATGATCGCCCTAGAAAGTTAAATCTTTTGCGTGGATTTTTCTACTGGTTGAAGAATATTTCCCAGGAAGGAAGCTTTAAACCTTGGAATGACAAAGCATGTTTGAAGGTGGTGCCGCAGACACTAAATAGGAGGACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

585

Amino Acids

66.13

Weight (kDa)

6.0

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1478
AccB1I GGYRCC 1 cut(s) 1726
AccI GTMKAC 1 cut(s) 1359
AciI CCGC 4 cut(s) 220, 1369, 1485, 1730
AclWI GGATC 8 cut(s) 456, 566, 579, 996, 1058, 1313, 1326, 1422
AcsI RAATTY 7 cut(s) 105, 616, 743, 952, 979, 1245, 1544
AfaI GTAC 7 cut(s) 133, 310, 427, 627, 1207, 1339, 1571
AfiI CCNNNNNNNGG 5 cut(s) 14, 181, 1073, 1328, 1395
AflII CTTAAG 1 cut(s) 1198
AflIII ACRYGT 1 cut(s) 652
AjiI CACGTC 1 cut(s) 653
AjnI CCWGG 3 cut(s) 383, 723, 1677
AjuI GAANNNNNNNTTGG 4 cut(s) 164, 196, 806, 838
AleI CACNNNNGTG 1 cut(s) 456
AluBI AGCT 6 cut(s) 98, 700, 830, 1154, 1185, 1689
AluI AGCT 6 cut(s) 98, 700, 830, 1154, 1185, 1689
Alw21I GWGCWC 2 cut(s) 702, 1311
Alw26I GTCTC 2 cut(s) 752, 1473
AlwI GGATC 8 cut(s) 456, 566, 579, 996, 1058, 1313, 1326, 1422
AoxI GGCC 2 cut(s) 5, 1424
ApeKI GCWGC 1 cut(s) 1481
ApoI RAATTY 7 cut(s) 105, 616, 743, 952, 979, 1245, 1544
AseI ATTAAT 1 cut(s) 1259
Asp700I GAANNNNTTC 1 cut(s) 952
AspS9I GGNCC 3 cut(s) 5, 1253, 1371
AsuC2I CCSGG 2 cut(s) 9, 1539
AsuHPI GGTGA 5 cut(s) 56, 356, 503, 527, 665
AvaII GGWCC 2 cut(s) 1253, 1371
BamHI GGATCC 2 cut(s) 571, 1318
BanI GGYRCC 1 cut(s) 1726
BanII GRGCYC 1 cut(s) 702
BauI CACGAG 1 cut(s) 312
BbsI GAAGAC 2 cut(s) 743, 1467
Bbv12I GWGCWC 2 cut(s) 702, 1311
BbvI GCAGC 1 cut(s) 1493
BcgI CGANNNNNNTGC 2 cut(s) 692, 726
BciT130I CCWGG 3 cut(s) 385, 725, 1679
BciVI GTATCC 1 cut(s) 1325
BclI TGATCA 1 cut(s) 250
BcnI CCSGG 2 cut(s) 9, 1539
BcoDI GTCTC 2 cut(s) 752, 1473
BfaI CTAG 7 cut(s) 246, 707, 867, 945, 1209, 1436, 1626
BfrI CTTAAG 1 cut(s) 1198
BfuAI ACCTGC 1 cut(s) 1478
BfuI GTATCC 1 cut(s) 1325
BisI GCNGC 3 cut(s) 1482, 1485, 1730
BlsI GCNGC 3 cut(s) 1483, 1486, 1731
Bme1390I CCNGG 5 cut(s) 9, 385, 725, 1539, 1679
Bme18I GGWCC 2 cut(s) 1253, 1371
BmgBI CACGTC 1 cut(s) 653
BmgT120I GGNCC 3 cut(s) 5, 1253, 1371
BmiI GGNNCC 7 cut(s) 6, 173, 573, 837, 891, 1320, 1728
BmrFI CCNGG 5 cut(s) 9, 385, 725, 1539, 1679
BmrI ACTGGG 1 cut(s) 1384
BmsI GCATC 5 cut(s) 370, 700, 769, 1048, 1591
BmuI ACTGGG 1 cut(s) 1384
BpiI GAAGAC 2 cut(s) 743, 1467
BpmI CTGGAG 1 cut(s) 650
BpuEI CTTGAG 1 cut(s) 1034
BpuMI CCSGG 2 cut(s) 9, 1539
Bsa29I ATCGAT 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 625
BsaBI GATNNNNATC 4 cut(s) 570, 1062, 1167, 1500
BsaI GGTCTC 1 cut(s) 1473
BsaJI CCNNGG 7 cut(s) 384, 676, 723, 724, 1538, 1677, 1697
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 5 cut(s) 14, 181, 1073, 1328, 1395
Bse1I ACTGG 4 cut(s) 633, 1390, 1469, 1664
Bse8I GATNNNNATC 4 cut(s) 570, 1062, 1167, 1500
BseBI CCWGG 3 cut(s) 385, 725, 1679
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 7 cut(s) 384, 676, 723, 724, 1538, 1677, 1697
BseGI GGATG 7 cut(s) 64, 400, 490, 652, 784, 1219, 1238
BseJI GATNNNNATC 4 cut(s) 570, 1062, 1167, 1500
BseLI CCNNNNNNNGG 5 cut(s) 14, 181, 1073, 1328, 1395
BseMII CTCAG 4 cut(s) 60, 197, 590, 1143
BseNI ACTGG 4 cut(s) 633, 1390, 1469, 1664
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 1493
BshFI GGCC 2 cut(s) 7, 1426
BshNI GGYRCC 1 cut(s) 1726
BshVI ATCGAT 1 cut(s) 30
BsiHKAI GWGCWC 2 cut(s) 702, 1311
BsiSI CCGG 2 cut(s) 8, 1538
BslFI GGGAC 2 cut(s) 242, 608
BslI CCNNNNNNNGG 5 cut(s) 14, 181, 1073, 1328, 1395
BsmAI GTCTC 2 cut(s) 752, 1473
BsmFI GGGAC 2 cut(s) 242, 608
BsmI GAATGC 3 cut(s) 358, 508, 718
BsnI GGCC 2 cut(s) 7, 1426
Bso31I GGTCTC 1 cut(s) 1473
Bsp1286I GDGCHC 2 cut(s) 702, 1311
Bsp1407I TGTACA 1 cut(s) 1569
BspACI CCGC 4 cut(s) 220, 1369, 1485, 1730
BspANI GGCC 2 cut(s) 7, 1426
BspCNI CTCAG 4 cut(s) 61, 198, 589, 1142
BspDI ATCGAT 1 cut(s) 30
BspHI TCATGA 1 cut(s) 1492
BspLI GGNNCC 7 cut(s) 6, 173, 573, 837, 891, 1320, 1728
BspMI ACCTGC 1 cut(s) 1478
BspPI GGATC 8 cut(s) 456, 566, 579, 996, 1058, 1313, 1326, 1422
BspT107I GGYRCC 1 cut(s) 1726
BspTI CTTAAG 1 cut(s) 1198
BspTNI GGTCTC 1 cut(s) 1473
BsrGI TGTACA 1 cut(s) 1569
BsrI ACTGG 4 cut(s) 633, 1390, 1469, 1664
BssECI CCNNGG 7 cut(s) 384, 676, 723, 724, 1538, 1677, 1697
BssSI CACGAG 1 cut(s) 312
BssT1I CCWWGG 2 cut(s) 676, 1697
Bst2BI CACGAG 1 cut(s) 312
Bst2UI CCWGG 3 cut(s) 385, 725, 1679
Bst4CI ACNGT 7 cut(s) 344, 430, 455, 899, 1104, 1337, 1364
Bst6I CTCTTC 3 cut(s) 803, 968, 1434
BstAFI CTTAAG 1 cut(s) 1198
BstAUI TGTACA 1 cut(s) 1569
BstBAI YACGTR 1 cut(s) 625
BstDEI CTNAG 4 cut(s) 69, 206, 576, 1129
BstF5I GGATG 7 cut(s) 64, 400, 490, 652, 784, 1219, 1238
BstMAI GTCTC 2 cut(s) 752, 1473
BstMWI GCNNNNNNNGC 1 cut(s) 1620
BstNI CCWGG 3 cut(s) 385, 725, 1679
BstNSI RCATGY 1 cut(s) 1716
BstSCI CCNGG 5 cut(s) 7, 383, 723, 1537, 1677
BstSNI TACGTA 1 cut(s) 625
BstV1I GCAGC 1 cut(s) 1493
BstV2I GAAGAC 2 cut(s) 743, 1467
BstX2I RGATCY 4 cut(s) 571, 1063, 1318, 1414
BstXI CCANNNNNNTGG 2 cut(s) 391, 683
BstYI RGATCY 4 cut(s) 571, 1063, 1318, 1414
Bsu15I ATCGAT 1 cut(s) 30
BsuI GTATCC 1 cut(s) 1325
BsuRI GGCC 2 cut(s) 7, 1426
BsuTUI ATCGAT 1 cut(s) 30
BtgZI GCGATG 2 cut(s) 696, 1629
BtrI CACGTC 1 cut(s) 653
BtsCI GGATG 7 cut(s) 64, 400, 490, 652, 784, 1219, 1238
BtsI GCAGTG 2 cut(s) 1532, 1611
BtsIMutI CAGTG 4 cut(s) 807, 1374, 1532, 1611
BveI ACCTGC 1 cut(s) 1478
CciI TCATGA 1 cut(s) 1492
Cfr13I GGNCC 3 cut(s) 5, 1253, 1371
ClaI ATCGAT 1 cut(s) 30
CseI GACGC 1 cut(s) 113
Csp6I GTAC 7 cut(s) 132, 309, 426, 626, 1206, 1338, 1570
CviAII CATG 6 cut(s) 254, 530, 548, 1325, 1493, 1713
CviJI RGCY 9 cut(s) 7, 98, 700, 830, 1154, 1185, 1426, 1484, 1689
CviKI_1 RGCY 9 cut(s) 7, 98, 700, 830, 1154, 1185, 1426, 1484, 1689
CviQI GTAC 7 cut(s) 132, 309, 426, 626, 1206, 1338, 1570
DdeI CTNAG 4 cut(s) 69, 206, 576, 1129
DraI TTTAAA 2 cut(s) 748, 1693
Eam1104I CTCTTC 3 cut(s) 803, 968, 1434
EarI CTCTTC 3 cut(s) 803, 968, 1434
Ecl136II GAGCTC 1 cut(s) 700
Eco105I TACGTA 1 cut(s) 625
Eco130I CCWWGG 2 cut(s) 676, 1697
Eco147I AGGCCT 1 cut(s) 1426
Eco24I GRGCYC 1 cut(s) 702
Eco31I GGTCTC 1 cut(s) 1473
Eco47I GGWCC 2 cut(s) 1253, 1371
Eco53kI GAGCTC 1 cut(s) 700
EcoICRI GAGCTC 1 cut(s) 700
EcoRII CCWGG 3 cut(s) 383, 723, 1677
EcoT14I CCWWGG 2 cut(s) 676, 1697
EcoT38I GRGCYC 1 cut(s) 702
ErhI CCWWGG 2 cut(s) 676, 1697
FaeI CATG 6 cut(s) 257, 533, 551, 1328, 1496, 1716
FaqI GGGAC 2 cut(s) 242, 608
FatI CATG 6 cut(s) 253, 529, 547, 1324, 1492, 1712
FauI CCCGC 1 cut(s) 213
FauNDI CATATG 1 cut(s) 1528
FbaI TGATCA 1 cut(s) 250
FblI GTMKAC 1 cut(s) 1359
Fnu4HI GCNGC 3 cut(s) 1482, 1485, 1730
FokI GGATG 7 cut(s) 71, 407, 497, 659, 791, 1225, 1226
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 3 cut(s) 1482, 1485, 1730
FspBI CTAG 7 cut(s) 246, 707, 867, 945, 1209, 1436, 1626
GluI GCNGC 3 cut(s) 1482, 1485, 1730
GsuI CTGGAG 1 cut(s) 650
HaeIII GGCC 2 cut(s) 7, 1426
HapII CCGG 2 cut(s) 8, 1538
HgaI GACGC 1 cut(s) 113
Hin1II CATG 6 cut(s) 257, 533, 551, 1328, 1496, 1716
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 1687
HinfI GANTC 7 cut(s) 214, 544, 1157, 1163, 1268, 1292, 1575
HpaII CCGG 2 cut(s) 8, 1538
HphI GGTGA 5 cut(s) 56, 356, 503, 527, 665
Hpy166II GTNNAC 7 cut(s) 340, 433, 689, 1253, 1340, 1360, 1374
Hpy188I TCNGA 6 cut(s) 847, 1132, 1162, 1273, 1291, 1297
Hpy8I GTNNAC 7 cut(s) 340, 433, 689, 1253, 1340, 1360, 1374
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 5 cut(s) 81, 598, 1042, 1676, 1714
HpyCH4III ACNGT 7 cut(s) 344, 430, 455, 899, 1104, 1337, 1364
HpyCH4IV ACGT 2 cut(s) 624, 652
HpyCH4V TGCA 6 cut(s) 161, 1061, 1143, 1411, 1532, 1604
HpyF10VI GCNNNNNNNGC 1 cut(s) 1620
HpyF3I CTNAG 4 cut(s) 69, 206, 576, 1129
HpySE526I ACGT 2 cut(s) 624, 652
Hsp92II CATG 6 cut(s) 257, 533, 551, 1328, 1496, 1716
Ksp22I TGATCA 1 cut(s) 250
Lsp1109I GCAGC 1 cut(s) 1493
LweI GCATC 5 cut(s) 370, 700, 769, 1048, 1591
MaeI CTAG 7 cut(s) 246, 707, 867, 945, 1209, 1436, 1626
MaeII ACGT 2 cut(s) 624, 652
MaeIII GTNAC 1 cut(s) 1606
MflI RGATCY 4 cut(s) 571, 1063, 1318, 1414
MhlI GDGCHC 2 cut(s) 702, 1311
MlyI GAGTC 1 cut(s) 1584
MmeI TCCRAC 1 cut(s) 162
MroXI GAANNNNTTC 1 cut(s) 952
MslI CAYNNNNRTG 4 cut(s) 246, 288, 456, 513
MspA1I CMGCKG 1 cut(s) 220
MspCI CTTAAG 1 cut(s) 1198
MspI CCGG 2 cut(s) 8, 1538
MspR9I CCNGG 5 cut(s) 9, 385, 725, 1539, 1679
Mva1269I GAATGC 3 cut(s) 358, 508, 718
MvaI CCWGG 3 cut(s) 385, 725, 1679
MwoI GCNNNNNNNGC 1 cut(s) 1620
NciI CCSGG 2 cut(s) 9, 1539
NdeI CATATG 1 cut(s) 1528
NlaIII CATG 6 cut(s) 257, 533, 551, 1328, 1496, 1716
NlaIV GGNNCC 7 cut(s) 6, 173, 573, 837, 891, 1320, 1728
NmuCI GTSAC 1 cut(s) 1606
NspI RCATGY 1 cut(s) 1716
OliI CACNNNNGTG 1 cut(s) 456
PagI TCATGA 1 cut(s) 1492
PasI CCCWGGG 1 cut(s) 724
PceI AGGCCT 1 cut(s) 1426
PctI GAATGC 3 cut(s) 358, 508, 718
PdmI GAANNNNTTC 1 cut(s) 952
PfeI GAWTC 6 cut(s) 214, 544, 1157, 1163, 1268, 1292
PkrI GCNGC 3 cut(s) 1483, 1486, 1731
PleI GAGTC 1 cut(s) 1583
PpsI GAGTC 1 cut(s) 1583
Ppu21I YACGTR 1 cut(s) 625
PshBI ATTAAT 1 cut(s) 1259
Psp124BI GAGCTC 1 cut(s) 702
Psp6I CCWGG 3 cut(s) 383, 723, 1677
PspGI CCWGG 3 cut(s) 383, 723, 1677
PspN4I GGNNCC 7 cut(s) 6, 173, 573, 837, 891, 1320, 1728
PspPI GGNCC 3 cut(s) 5, 1253, 1371
PsuI RGATCY 4 cut(s) 571, 1063, 1318, 1414
RsaI GTAC 7 cut(s) 133, 310, 427, 627, 1207, 1339, 1571
RsaNI GTAC 7 cut(s) 132, 309, 426, 626, 1206, 1338, 1570
RseI CAYNNNNRTG 4 cut(s) 246, 288, 456, 513
SacI GAGCTC 1 cut(s) 702
SatI GCNGC 3 cut(s) 1482, 1485, 1730
Sau96I GGNCC 3 cut(s) 5, 1253, 1371
SchI GAGTC 1 cut(s) 1584
ScrFI CCNGG 5 cut(s) 9, 385, 725, 1539, 1679
SduI GDGCHC 2 cut(s) 702, 1311
SfaNI GCATC 5 cut(s) 370, 700, 769, 1048, 1591
SinI GGWCC 2 cut(s) 1253, 1371
SmiMI CAYNNNNRTG 4 cut(s) 246, 288, 456, 513
SmlI CTYRAG 2 cut(s) 1013, 1198
SmoI CTYRAG 2 cut(s) 1013, 1198
SnaBI TACGTA 1 cut(s) 625
SseBI AGGCCT 1 cut(s) 1426
SsiI CCGC 4 cut(s) 220, 1369, 1485, 1730
SspI AATATT 1 cut(s) 1672
SspMI CTAG 7 cut(s) 246, 707, 867, 945, 1209, 1436, 1626
SstI GAGCTC 1 cut(s) 702
StuI AGGCCT 1 cut(s) 1426
StyD4I CCNGG 5 cut(s) 7, 383, 723, 1537, 1677
StyI CCWWGG 2 cut(s) 676, 1697
TaaI ACNGT 7 cut(s) 344, 430, 455, 899, 1104, 1337, 1364
TaiI ACGT 2 cut(s) 627, 655
TaqI TCGA 4 cut(s) 30, 702, 1311, 1578
TatI WGTACW 3 cut(s) 308, 1205, 1569
TauI GCSGC 2 cut(s) 1487, 1732
TfiI GAWTC 6 cut(s) 214, 544, 1157, 1163, 1268, 1292
TscAI CASTG 4 cut(s) 807, 1381, 1539, 1611
TseFI GTSAC 1 cut(s) 1606
TseI GCWGC 1 cut(s) 1481
Tsp45I GTSAC 1 cut(s) 1606
TspDTI ATGAA 8 cut(s) 252, 294, 315, 363, 518, 609, 1275, 1290
TspRI CASTG 4 cut(s) 807, 1381, 1539, 1611
Vha464I CTTAAG 1 cut(s) 1198
VpaK11BI GGWCC 2 cut(s) 1253, 1371
VspI ATTAAT 1 cut(s) 1259
XapI RAATTY 7 cut(s) 105, 616, 743, 952, 979, 1245, 1544
XbaI TCTAGA 1 cut(s) 706
XceI RCATGY 1 cut(s) 1716
XmiI GTMKAC 1 cut(s) 1359
XmnI GAANNNNTTC 1 cut(s) 952
XspI CTAG 7 cut(s) 246, 707, 867, 945, 1209, 1436, 1626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.