Rroxscaffold_7G00171150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000931
Physical Location & Seq
Forward (+)
11494738 .. 11498707
3970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00171150.1

Sequence Viewer

Length: 1920 bp
ATGGGGTCCACTCTGGAGAGGAAAAGGGTCAGGCTGATGGAGGATGATTCGAGAGTGGATAACGAGTGTGATAAGTTGGTGAGTTTAGTTCAGCATGGTGAGGATTCTGGTCATGATAATGTTGATGTTAGGTGTTTGGATTATGGTCTTCATGATGATGTGGACCCTCGGTCTAAGTTGCTCTTGGAACATTTGAGGGGAGATGGTTTGCCGAGGCGGATCAAGAGAAGATGCATTTCTAGTGAAGATGAGGATCCTCAGTATAAGTTGTTCTTGGAAAACTTGAGGGAAGATGGGAATTCATATGGATTGGTGGTTGTCCGAGACAATGGGGTTTCGGAATTGATAAGGTATCACCAAGAGGGTGGATATGCGAGGCGGATCATGAGAAGATGCATTTCTAAAGAAGATGTGGATCCTCAGTATAAGTTATTCTTGGAAAATTTGAGGGAAGATGGAAACTCATATGCATTTGAAGTTGTTCAAGAGAATGGGGTTTCGGAACTGATAAGGTATCACAGCAATGGCTTGGTGAAGCGGAGCAAGAGAAGATGCACTTCTATTGAAGATGTGGATCCTCAATATGCGTTGTTCTTGGAAAGTTTGAGGGAAGATGGAAATTCATATGCACTGGAAGTTGTTCGTGAGGGTGGGATTTCAGAATTGATAAGCTATCACCAAGACAATGGCTTGGGGAGGCTTGTGAAGAGAACATCTGTTTGTAATAAAAAGTTGGAAAACCTAATGTTGGTTGATAACTGTGAGAATACCTTGAGTTCAGTTAAGCATGGCCATGATGAGGATGAACACCCTGGTGATGACAATGGTGATATCTGGTCTGTGGATGATAGTTATAATGGGCATGGGTTTACGGGTGATGATAGTGATGTCGGGTCTCTGGATGATGGTGATAATGGGACTGAACACTCTACTAATGATGATATTGATTTTGAGTCTGTGCATGATGGTGATAATTGGAACGAACAGTGTAGTGATGACAATGTTCATATCAAGTCCTTGGGTGATGATGTTATGGAACCCAAGTTCAAGTTATTTGTGGAAAATTTGAGGGAGGATGAAAATATGAATGCACAGGAGATTGTTCAAGAAACTGGGATTTTGGAACACTTAAAGCATCACCAAAACAATGGATTACCAGATGAGCCTAGTTTAGCAGCCACTGAACCTATGAAGAATTCTTTGATGAAAGATAAGACTCAAATTGAAAACAGGTTCACTCTGGAAATTTTAAAGGATCTCCCAAAGAGAAAGAGTTCAGTGGTGAAGAAGAATGCAGAATTGGCAGCTCCAGATCCTGCTTTCGGTATGGCAAACGGGGTTTCCACACTTGCCAGTAAAAGACCTTGTCCGGAGGTTCCTAACAATCCAGAAGAGCTCAATTCAGATACTCCAGAAACTTTGAAAAGTCCTCAGGTCAAAGAGAAGCCTGTAATAGAAAACAAGGATATTCTGGAACTTATTGAGAAATTCCGAGAGAAAAGGAGTTCAGTGGTGAAGAAAAATGCAAAATTGGAAATTCTGAATCCTGTTTCTAGTAGGACAAGAGGGCATTCAAGTAAAAGGCCTCATTTAGAGGCTCATAATACTCCAGAAAGCTTCATAAGTTTGCCGTTGAGAGAGAAAATGGAAACTAAAAGAACTTTGAGGCTTATGAAAAAGGAAAAGGTAAAGATAAATAGACCTAAGAAGTCTGCTCATCTTTTAAATGAAGAAGAGACCAAGGGACCAAAGACTTTAAGAAATAAAAGAAGTGAATCTCTGCAGAGTTTAGAGGATCTTCAAGAGAAAAAAAGTTCTAGGGTGAAGAAGAATGTGAAGGGGAAGCTAAATATCCTTATTCCTATAGGAAGAACGAACTTCCTAACAAAAGACCTGGTTCAGAGGTTCTTCATTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

639

Amino Acids

72.87

Weight (kDa)

5.67

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 855
AccIII TCCGGA 1 cut(s) 1369
AciI CCGC 3 cut(s) 217, 379, 538
AcoI YGGCCR 1 cut(s) 790
AcsI RAATTY 8 cut(s) 298, 442, 619, 1063, 1195, 1245, 1487, 1536
AfiI CCNNNNNNNGG 3 cut(s) 748, 799, 1322
AgsI TTSAA 9 cut(s) 476, 485, 566, 1048, 1106, 1226, 1423, 1575, 1802
AhdI GACNNNNNGTC 1 cut(s) 169
AjnI CCWGG 2 cut(s) 811, 1893
AjuI GAANNNNNNNTTGG 2 cut(s) 1283, 1315
AleI CACNNNNGTG 1 cut(s) 813
AloI GAACNNNNNNTCC 2 cut(s) 1028, 1060
AluBI AGCT 5 cut(s) 672, 1307, 1396, 1617, 1846
AluI AGCT 5 cut(s) 672, 1307, 1396, 1617, 1846
Alw21I GWGCWC 1 cut(s) 1398
Alw26I GTCTC 3 cut(s) 318, 900, 1730
AlwNI CAGNNNCTG 2 cut(s) 1181, 1316
Aor13HI TCCGGA 1 cut(s) 1369
AoxI GGCC 2 cut(s) 790, 1583
ApeKI GCWGC 2 cut(s) 1175, 1304
ApoI RAATTY 8 cut(s) 298, 442, 619, 1063, 1195, 1245, 1487, 1536
Asp700I GAANNNNTTC 3 cut(s) 480, 639, 1273
AspS9I GGNCC 3 cut(s) 6, 163, 1745
AvaII GGWCC 3 cut(s) 6, 163, 1745
AxyI CCTNAGG 1 cut(s) 1431
BalI TGGCCA 1 cut(s) 792
BamHI GGATCC 3 cut(s) 253, 415, 574
BanII GRGCYC 1 cut(s) 1398
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 1398
BbvI GCAGC 2 cut(s) 1187, 1316
BccI CCATC 7 cut(s) 31, 197, 287, 449, 608, 899, 959
BceAI ACGGC 1 cut(s) 1615
BciT130I CCWGG 2 cut(s) 813, 1895
BcoDI GTCTC 3 cut(s) 318, 900, 1730
BfaI CTAG 4 cut(s) 240, 1167, 1554, 1818
BfmI CTRYAG 2 cut(s) 1781, 1863
BisI GCNGC 2 cut(s) 1176, 1305
BlsI GCNGC 2 cut(s) 1177, 1306
Bme1390I CCNGG 2 cut(s) 813, 1895
Bme18I GGWCC 3 cut(s) 6, 163, 1745
BmeRI GACNNNNNGTC 1 cut(s) 169
BmgT120I GGNCC 3 cut(s) 6, 163, 1745
BmiI GGNNCC 8 cut(s) 7, 165, 255, 417, 576, 1038, 1377, 1746
BmrFI CCNGG 2 cut(s) 813, 1895
BmrI ACTGGG 1 cut(s) 1122
BmsI GCATC 4 cut(s) 221, 383, 542, 1144
BmuI ACTGGG 1 cut(s) 1122
BpiI GAAGAC 1 cut(s) 140
BpmI CTGGAG 4 cut(s) 35, 1293, 1395, 1593
BpuEI CTTGAG 2 cut(s) 304, 793
BsaBI GATNNNNATC 3 cut(s) 252, 414, 573
BsaI GGTCTC 2 cut(s) 900, 1730
BsaJI CCNNGG 5 cut(s) 167, 212, 811, 1017, 1740
BsaWI WCCGGW 1 cut(s) 1369
Bsc4I CCNNNNNNNGG 3 cut(s) 748, 799, 1322
Bse1I ACTGG 3 cut(s) 636, 1117, 1353
Bse21I CCTNAGG 1 cut(s) 1431
Bse3DI GCAATG 1 cut(s) 529
Bse8I GATNNNNATC 3 cut(s) 252, 414, 573
BseAI TCCGGA 1 cut(s) 1369
BseBI CCWGG 2 cut(s) 813, 1895
BseDI CCNNGG 5 cut(s) 167, 212, 811, 1017, 1740
BseGI GGATG 5 cut(s) 49, 808, 850, 907, 1081
BseJI GATNNNNATC 3 cut(s) 252, 414, 573
BseLI CCNNNNNNNGG 3 cut(s) 748, 799, 1322
BseMI GCAATG 1 cut(s) 529
BseMII CTCAG 3 cut(s) 272, 434, 1445
BseNI ACTGG 3 cut(s) 636, 1117, 1353
BseXI GCAGC 2 cut(s) 1187, 1316
BshFI GGCC 2 cut(s) 792, 1585
BsiHKAI GWGCWC 1 cut(s) 1398
BsiSI CCGG 1 cut(s) 1370
BslFI GGGAC 2 cut(s) 931, 1758
BslI CCNNNNNNNGG 3 cut(s) 748, 799, 1322
BsmAI GTCTC 3 cut(s) 318, 900, 1730
BsmFI GGGAC 2 cut(s) 931, 1758
BsmI GAATGC 3 cut(s) 1093, 1297, 1570
BsnI GGCC 2 cut(s) 792, 1585
Bso31I GGTCTC 2 cut(s) 900, 1730
Bsp1286I GDGCHC 1 cut(s) 1398
Bsp13I TCCGGA 1 cut(s) 1369
Bsp143I GATC 8 cut(s) 219, 253, 381, 415, 574, 1255, 1312, 1795
BspACI CCGC 3 cut(s) 217, 379, 538
BspANI GGCC 2 cut(s) 792, 1585
BspCNI CTCAG 3 cut(s) 271, 433, 1444
BspEI TCCGGA 1 cut(s) 1369
BspHI TCATGA 3 cut(s) 112, 151, 384
BspLI GGNNCC 8 cut(s) 7, 165, 255, 417, 576, 1038, 1377, 1746
BspMAI CTGCAG 1 cut(s) 1785
BspQI GCTCTTC 1 cut(s) 1386
BspTNI GGTCTC 2 cut(s) 900, 1730
BsrDI GCAATG 1 cut(s) 529
BsrI ACTGG 3 cut(s) 636, 1117, 1353
BssECI CCNNGG 5 cut(s) 167, 212, 811, 1017, 1740
BssMI GATC 8 cut(s) 219, 253, 381, 415, 574, 1255, 1312, 1795
BssT1I CCWWGG 2 cut(s) 1017, 1740
Bst2UI CCWGG 2 cut(s) 813, 1895
Bst4CI ACNGT 2 cut(s) 761, 987
Bst6I CTCTTC 3 cut(s) 701, 1386, 1728
BstDEI CTNAG 5 cut(s) 174, 258, 420, 1431, 1704
BstF5I GGATG 5 cut(s) 49, 808, 850, 907, 1081
BstKTI GATC 8 cut(s) 222, 256, 384, 418, 577, 1258, 1315, 1798
BstMAI GTCTC 3 cut(s) 318, 900, 1730
BstMBI GATC 8 cut(s) 219, 253, 381, 415, 574, 1255, 1312, 1795
BstMWI GCNNNNNNNGC 1 cut(s) 1301
BstNI CCWGG 2 cut(s) 813, 1895
BstSCI CCNGG 2 cut(s) 811, 1893
BstSFI CTRYAG 2 cut(s) 1781, 1863
BstV1I GCAGC 2 cut(s) 1187, 1316
BstV2I GAAGAC 1 cut(s) 140
BstX2I RGATCY 6 cut(s) 253, 415, 574, 1255, 1312, 1795
BstXI CCANNNNNNTGG 3 cut(s) 365, 686, 1148
BstYI RGATCY 6 cut(s) 253, 415, 574, 1255, 1312, 1795
Bsu36I CCTNAGG 1 cut(s) 1431
BsuRI GGCC 2 cut(s) 792, 1585
BtsCI GGATG 5 cut(s) 49, 808, 850, 907, 1081
BtsIMutI CAGTG 5 cut(s) 629, 992, 1179, 1284, 1515
CaiI CAGNNNCTG 2 cut(s) 1181, 1316
CciI TCATGA 3 cut(s) 112, 151, 384
Cfr13I GGNCC 3 cut(s) 6, 163, 1745
CsiI ACCWGGT 1 cut(s) 1893
CviAII CATG 8 cut(s) 95, 113, 152, 385, 788, 794, 863, 962
DdeI CTNAG 5 cut(s) 174, 258, 420, 1431, 1704
DpnI GATC 8 cut(s) 221, 255, 383, 417, 576, 1257, 1314, 1797
DpnII GATC 8 cut(s) 219, 253, 381, 415, 574, 1255, 1312, 1795
DraI TTTAAA 2 cut(s) 1251, 1725
DriI GACNNNNNGTC 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 790
Eam1104I CTCTTC 3 cut(s) 701, 1386, 1728
Eam1105I GACNNNNNGTC 1 cut(s) 169
EarI CTCTTC 3 cut(s) 701, 1386, 1728
EciI GGCGGA 2 cut(s) 232, 394
Ecl136II GAGCTC 1 cut(s) 1396
Eco130I CCWWGG 2 cut(s) 1017, 1740
Eco147I AGGCCT 1 cut(s) 1585
Eco24I GRGCYC 1 cut(s) 1398
Eco31I GGTCTC 2 cut(s) 900, 1730
Eco32I GATATC 1 cut(s) 832
Eco47I GGWCC 3 cut(s) 6, 163, 1745
Eco53kI GAGCTC 1 cut(s) 1396
Eco81I CCTNAGG 1 cut(s) 1431
EcoICRI GAGCTC 1 cut(s) 1396
EcoRI GAATTC 2 cut(s) 298, 1195
EcoRII CCWGG 2 cut(s) 811, 1893
EcoRV GATATC 1 cut(s) 832
EcoT14I CCWWGG 2 cut(s) 1017, 1740
EcoT22I ATGCAT 3 cut(s) 236, 398, 472
EcoT38I GRGCYC 1 cut(s) 1398
ErhI CCWWGG 2 cut(s) 1017, 1740
FaeI CATG 8 cut(s) 98, 116, 155, 388, 791, 797, 866, 965
FalI AAGNNNNNCTT 8 cut(s) 167, 199, 257, 289, 419, 451, 541, 573
FaqI GGGAC 2 cut(s) 931, 1758
FatI CATG 8 cut(s) 94, 112, 151, 384, 787, 793, 862, 961
FauNDI CATATG 3 cut(s) 304, 466, 625
Fnu4HI GCNGC 2 cut(s) 1176, 1305
FokI GGATG 5 cut(s) 56, 815, 857, 914, 1088
FriOI GRGCYC 1 cut(s) 1398
Fsp4HI GCNGC 2 cut(s) 1176, 1305
FspBI CTAG 4 cut(s) 240, 1167, 1554, 1818
GluI GCNGC 2 cut(s) 1176, 1305
GsuI CTGGAG 4 cut(s) 35, 1293, 1395, 1593
HaeIII GGCC 2 cut(s) 792, 1585
HapII CCGG 1 cut(s) 1370
Hin1II CATG 8 cut(s) 98, 116, 155, 388, 791, 797, 866, 965
HindIII AAGCTT 1 cut(s) 1615
HinfI GANTC 6 cut(s) 47, 104, 953, 1216, 1543, 1775
HpaII CCGG 1 cut(s) 1370
Hpy166II GTNNAC 4 cut(s) 9, 163, 870, 1236
Hpy188I TCNGA 8 cut(s) 323, 340, 502, 661, 1405, 1493, 1542, 1902
Hpy8I GTNNAC 4 cut(s) 9, 163, 870, 1236
HpyAV CCTTC 1 cut(s) 1831
HpyCH4III ACNGT 2 cut(s) 761, 987
HpyF10VI GCNNNNNNNGC 1 cut(s) 1301
HpyF3I CTNAG 5 cut(s) 174, 258, 420, 1431, 1704
Hsp92II CATG 8 cut(s) 98, 116, 155, 388, 791, 797, 866, 965
Kpn2I TCCGGA 1 cut(s) 1369
Kzo9I GATC 8 cut(s) 219, 253, 381, 415, 574, 1255, 1312, 1795
LguI GCTCTTC 1 cut(s) 1386
LmnI GCTCC 2 cut(s) 540, 1312
Lsp1109I GCAGC 2 cut(s) 1187, 1316
LweI GCATC 4 cut(s) 221, 383, 542, 1144
MabI ACCWGGT 1 cut(s) 1893
MaeI CTAG 4 cut(s) 240, 1167, 1554, 1818
MalI GATC 8 cut(s) 221, 255, 383, 417, 576, 1257, 1314, 1797
MboI GATC 8 cut(s) 219, 253, 381, 415, 574, 1255, 1312, 1795
MflI RGATCY 6 cut(s) 253, 415, 574, 1255, 1312, 1795
MhlI GDGCHC 1 cut(s) 1398
MlsI TGGCCA 1 cut(s) 792
MluNI TGGCCA 1 cut(s) 792
MlyI GAGTC 2 cut(s) 962, 1210
MmeI TCCRAC 1 cut(s) 714
Mox20I TGGCCA 1 cut(s) 792
Mph1103I ATGCAT 3 cut(s) 236, 398, 472
MroI TCCGGA 1 cut(s) 1369
MroXI GAANNNNTTC 3 cut(s) 480, 639, 1273
MscI TGGCCA 1 cut(s) 792
MseI TTAA 5 cut(s) 783, 1130, 1250, 1724, 1757
MslI CAYNNNNRTG 6 cut(s) 117, 156, 522, 792, 813, 966
Msp20I TGGCCA 1 cut(s) 792
MspI CCGG 1 cut(s) 1370
MspR9I CCNGG 2 cut(s) 813, 1895
Mva1269I GAATGC 3 cut(s) 1093, 1297, 1570
MvaI CCWGG 2 cut(s) 813, 1895
MwoI GCNNNNNNNGC 1 cut(s) 1301
NdeI CATATG 3 cut(s) 304, 466, 625
NdeII GATC 8 cut(s) 219, 253, 381, 415, 574, 1255, 1312, 1795
NlaIII CATG 8 cut(s) 98, 116, 155, 388, 791, 797, 866, 965
NlaIV GGNNCC 8 cut(s) 7, 165, 255, 417, 576, 1038, 1377, 1746
NmeAIII GCCGAG 1 cut(s) 237
NsiI ATGCAT 3 cut(s) 236, 398, 472
OliI CACNNNNGTG 1 cut(s) 813
PagI TCATGA 3 cut(s) 112, 151, 384
PceI AGGCCT 1 cut(s) 1585
PciSI GCTCTTC 1 cut(s) 1386
PctI GAATGC 3 cut(s) 1093, 1297, 1570
PdmI GAANNNNTTC 3 cut(s) 480, 639, 1273
PfeI GAWTC 4 cut(s) 47, 104, 1543, 1775
PflFI GACNNNGTC 1 cut(s) 1365
PkrI GCNGC 2 cut(s) 1177, 1306
PleI GAGTC 2 cut(s) 961, 1210
PpsI GAGTC 2 cut(s) 961, 1210
PsiI TTATAA 1 cut(s) 855
Psp124BI GAGCTC 1 cut(s) 1398
Psp6I CCWGG 2 cut(s) 811, 1893
PspGI CCWGG 2 cut(s) 811, 1893
PspN4I GGNNCC 8 cut(s) 7, 165, 255, 417, 576, 1038, 1377, 1746
PspPI GGNCC 3 cut(s) 6, 163, 1745
PsrI GAACNNNNNNTAC 2 cut(s) 254, 286
PstI CTGCAG 1 cut(s) 1785
PstNI CAGNNNCTG 2 cut(s) 1181, 1316
PsuI RGATCY 6 cut(s) 253, 415, 574, 1255, 1312, 1795
PsyI GACNNNGTC 1 cut(s) 1365
RseI CAYNNNNRTG 6 cut(s) 117, 156, 522, 792, 813, 966
SacI GAGCTC 1 cut(s) 1398
SapI GCTCTTC 1 cut(s) 1386
SaqAI TTAA 5 cut(s) 783, 1130, 1250, 1724, 1757
SatI GCNGC 2 cut(s) 1176, 1305
Sau3AI GATC 8 cut(s) 219, 253, 381, 415, 574, 1255, 1312, 1795
Sau96I GGNCC 3 cut(s) 6, 163, 1745
SchI GAGTC 2 cut(s) 962, 1210
ScrFI CCNGG 2 cut(s) 813, 1895
SduI GDGCHC 1 cut(s) 1398
SexAI ACCWGGT 1 cut(s) 1893
SfaNI GCATC 4 cut(s) 221, 383, 542, 1144
SfcI CTRYAG 2 cut(s) 1781, 1863
SinI GGWCC 3 cut(s) 6, 163, 1745
SmiMI CAYNNNNRTG 6 cut(s) 117, 156, 522, 792, 813, 966
SmlI CTYRAG 2 cut(s) 283, 772
SmoI CTYRAG 2 cut(s) 283, 772
SseBI AGGCCT 1 cut(s) 1585
SsiI CCGC 3 cut(s) 217, 379, 538
SspMI CTAG 4 cut(s) 240, 1167, 1554, 1818
SstI GAGCTC 1 cut(s) 1398
StuI AGGCCT 1 cut(s) 1585
StyD4I CCNGG 2 cut(s) 811, 1893
StyI CCWWGG 2 cut(s) 1017, 1740
TaaI ACNGT 2 cut(s) 761, 987
TaqI TCGA 1 cut(s) 50
TaqII GACCGA 1 cut(s) 159
TfiI GAWTC 4 cut(s) 47, 104, 1543, 1775
Tru1I TTAA 5 cut(s) 783, 1130, 1250, 1724, 1757
Tru9I TTAA 5 cut(s) 783, 1130, 1250, 1724, 1757
TscAI CASTG 5 cut(s) 636, 992, 1186, 1284, 1515
TseI GCWGC 2 cut(s) 1175, 1304
TspRI CASTG 5 cut(s) 636, 992, 1186, 1284, 1515
Tth111I GACNNNGTC 1 cut(s) 1365
VpaK11BI GGWCC 3 cut(s) 6, 163, 1745
XapI RAATTY 8 cut(s) 298, 442, 619, 1063, 1195, 1245, 1487, 1536
XmnI GAANNNNTTC 3 cut(s) 480, 639, 1273
XspI CTAG 4 cut(s) 240, 1167, 1554, 1818
Zsp2I ATGCAT 3 cut(s) 236, 398, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.