Rw6G032990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000931
Physical Location & Seq
Reverse (-)
57204493 .. 57207574
3082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G032990.1

Sequence Viewer

Length: 1575 bp
ATGTTGGATAAGGATTATGAGAAATACCTGAGTTTGATTCAGCGGGGTCGGGAGTTGAATGAACATTCTAGTGATCACGGTATTAATGGGGATTGCGAGAATGAACATAATGATGATGGGAATGAACATCGTACTGGTGAAAATAATGATATTAGGTCTGTGGACGGTGATGGAAACAAGCATTCTGTTGATGACAATAATGATGCCAGGGTTGTGGATGGTAGTGGGAGCGAACATTCTGTTGATGATACTGTCAACTTGAAGTCTGTGGATCACAGTGGTGGTAGGAATGGACGATGTGGCGTGGATGATGGTGATGGTGGGAATGCTCATTTTGGTGATGGCAACATTCATGTTAATTCTTTGAATCATGGCGTCGATGATGATGATATGGATCCTCAGTATAAGATATTCTGGGACAATTTGAAGGAAGATGGAAATTCATACGTACTGGAGATGGTTCAAGAGGATGGACGTGTGAAACAGATAAGGTATCACCAAGGCGATGGTTTACCTGATGAGCTCGATCTAGATGCCACGCATTCCCAGGGCAAACAGAAGACTGAATTTAAAAATAGGGAGACTACGGAAAATTTAGAGGCTGCCCCAGAGAAAAGGTTTTCAGTGAGGAAGAGGAATGTAAAATTGGAAGCTCTGGAACCTATTTTAGACGGAACAAATGTGTGTTCTAGTAAACGACCTCGTTTAGAGGTTCCAAACACTCCAAAAAGTTTAGGAAGTTCTCCACAGAAAGAGAAAACTGAAACTAGAAGAAATTCAAGGAGTGTCATTAAGAAGAGAAATTTAGAGGATCGTCCGGCGAAAAAGAATGGTCTTGAGAAAAAGAGTTCAATGTTGAAGAAGAATGTGAAGGAAGCAGATGCAGATCCTCTTTCTGGTAGAGCAAATGGGCGTTCTCATAAACAGTCTGGTTCAAAATATCTTTGGTTCTCAGAGGGTGGGTGCAATAGTGAAGCTGAATCTGATTCTAATCTAACAGATGACAGCTATCAAGAGTTCTTAAGTTGTACTAAGGATGATGGGAAAGTTATGGTATTTACATCCAGAATTTGTGGACCATTAATATATGATTCAGATGAAGAAAGTTCATCAGATTCGGATGTGATCGTGCTCGACAGGGATCCACATGAGGGATACCGTACACCAATTAAGATTGATGTAGACAGTCGGCGGTCCACTGAAAGTCATTCCCAGTTTAGGCAAGGGATTATGCAGGATCTTAAAAGGCCTTACCACCTAGAAGAGTATATCAATCTCTTGGAAGACTGGTCTTGCCAAAGGCCAGCCACAGGTCATGATAGAAATCTACGAAATGGAAATGTAAAATCATATGCACTGCCGGGGGAATTTGGGAAATCATATCAAGAGATGTACAAAGATCTGGCAGGAAAGATTAATGCAGTGACAGGCGATGATCGCCCTAGAAAGTTAAATCTTTTGCGTGGATTTTTCTACTGGTTGAAGAATATTTCCCAGGAAGGAAGCTTTAAACCTTGGAATGACAAAGCATGTTTGAAGGTGGTGCCGCAGACACTAAATAGGAGGACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

524

Amino Acids

59.17

Weight (kDa)

5.55

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1543
AccI GTMKAC 1 cut(s) 1182
AciI CCGC 3 cut(s) 43, 1192, 1547
AclWI GGATC 8 cut(s) 279, 389, 402, 819, 881, 1136, 1149, 1245
AcsI RAATTY 7 cut(s) 439, 566, 592, 775, 802, 1068, 1367
AcyI GRCGYC 1 cut(s) 375
AfaI GTAC 5 cut(s) 133, 450, 1030, 1162, 1394
AfiI CCNNNNNNNGG 4 cut(s) 896, 1151, 1218, 1310
AflII CTTAAG 1 cut(s) 1021
AflIII ACRYGT 1 cut(s) 475
AjiI CACGTC 1 cut(s) 476
AjnI CCWGG 3 cut(s) 206, 546, 1494
AjuI GAANNNNNNNTTGG 2 cut(s) 629, 661
AleI CACNNNNGTG 1 cut(s) 279
AluBI AGCT 5 cut(s) 523, 653, 977, 1008, 1506
AluI AGCT 5 cut(s) 523, 653, 977, 1008, 1506
Alw21I GWGCWC 2 cut(s) 525, 1134
Alw26I GTCTC 1 cut(s) 575
AlwI GGATC 8 cut(s) 279, 389, 402, 819, 881, 1136, 1149, 1245
AoxI GGCC 2 cut(s) 1247, 1301
ApeKI GCWGC 1 cut(s) 602
ApoI RAATTY 7 cut(s) 439, 566, 592, 775, 802, 1068, 1367
AseI ATTAAT 3 cut(s) 84, 1082, 1416
Asp700I GAANNNNTTC 1 cut(s) 775
AspS9I GGNCC 2 cut(s) 1076, 1194
AsuC2I CCSGG 1 cut(s) 1362
AsuHPI GGTGA 5 cut(s) 149, 179, 326, 350, 488
AvaII GGWCC 2 cut(s) 1076, 1194
BamHI GGATCC 2 cut(s) 394, 1141
BanI GGYRCC 1 cut(s) 1543
BanII GRGCYC 1 cut(s) 525
BbsI GAAGAC 2 cut(s) 566, 1290
Bbv12I GWGCWC 2 cut(s) 525, 1134
BbvI GCAGC 1 cut(s) 589
BcgI CGANNNNNNTGC 2 cut(s) 515, 549
BciT130I CCWGG 3 cut(s) 208, 548, 1496
BciVI GTATCC 1 cut(s) 1148
BclI TGATCA 1 cut(s) 73
BcnI CCSGG 1 cut(s) 1362
BcoDI GTCTC 1 cut(s) 575
BfaI CTAG 6 cut(s) 69, 530, 690, 768, 1259, 1443
BfrI CTTAAG 1 cut(s) 1021
BfuI GTATCC 1 cut(s) 1148
BglII AGATCT 1 cut(s) 1399
BisI GCNGC 2 cut(s) 603, 1547
BlsI GCNGC 2 cut(s) 604, 1548
Bme1390I CCNGG 4 cut(s) 208, 548, 1362, 1496
Bme18I GGWCC 2 cut(s) 1076, 1194
BmgBI CACGTC 1 cut(s) 476
BmgT120I GGNCC 2 cut(s) 1076, 1194
BmiI GGNNCC 5 cut(s) 396, 660, 714, 1143, 1545
BmrFI CCNGG 4 cut(s) 208, 548, 1362, 1496
BmrI ACTGGG 1 cut(s) 1207
BmsI GCATC 3 cut(s) 193, 523, 871
BmuI ACTGGG 1 cut(s) 1207
BpiI GAAGAC 2 cut(s) 566, 1290
BpmI CTGGAG 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 857
BpuMI CCSGG 1 cut(s) 1362
BsaAI YACGTR 1 cut(s) 448
BsaBI GATNNNNATC 4 cut(s) 393, 885, 990, 1323
BsaHI GRCGYC 1 cut(s) 375
BsaJI CCNNGG 7 cut(s) 207, 499, 546, 547, 1361, 1494, 1514
Bsc4I CCNNNNNNNGG 4 cut(s) 896, 1151, 1218, 1310
Bse1I ACTGG 5 cut(s) 139, 456, 1213, 1292, 1481
Bse8I GATNNNNATC 4 cut(s) 393, 885, 990, 1323
BseBI CCWGG 3 cut(s) 208, 548, 1496
BseDI CCNNGG 7 cut(s) 207, 499, 546, 547, 1361, 1494, 1514
BseGI GGATG 6 cut(s) 223, 313, 475, 1042, 1061, 1126
BseJI GATNNNNATC 4 cut(s) 393, 885, 990, 1323
BseLI CCNNNNNNNGG 4 cut(s) 896, 1151, 1218, 1310
BseMII CTCAG 3 cut(s) 20, 413, 966
BseNI ACTGG 5 cut(s) 139, 456, 1213, 1292, 1481
BseXI GCAGC 1 cut(s) 589
BshFI GGCC 2 cut(s) 1249, 1303
BshNI GGYRCC 1 cut(s) 1543
BsiHKAI GWGCWC 2 cut(s) 525, 1134
BsiSI CCGG 2 cut(s) 818, 1361
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 4 cut(s) 896, 1151, 1218, 1310
BsmAI GTCTC 1 cut(s) 575
BsmFI GGGAC 1 cut(s) 431
BsmI GAATGC 3 cut(s) 181, 331, 541
BsnI GGCC 2 cut(s) 1249, 1303
Bsp1286I GDGCHC 2 cut(s) 525, 1134
Bsp1407I TGTACA 1 cut(s) 1392
BspACI CCGC 3 cut(s) 43, 1192, 1547
BspANI GGCC 2 cut(s) 1249, 1303
BspCNI CTCAG 3 cut(s) 21, 412, 965
BspHI TCATGA 1 cut(s) 1315
BspLI GGNNCC 5 cut(s) 396, 660, 714, 1143, 1545
BspPI GGATC 8 cut(s) 279, 389, 402, 819, 881, 1136, 1149, 1245
BspT107I GGYRCC 1 cut(s) 1543
BspTI CTTAAG 1 cut(s) 1021
BsrGI TGTACA 1 cut(s) 1392
BsrI ACTGG 5 cut(s) 139, 456, 1213, 1292, 1481
BssECI CCNNGG 7 cut(s) 207, 499, 546, 547, 1361, 1494, 1514
BssNI GRCGYC 1 cut(s) 375
BssT1I CCWWGG 2 cut(s) 499, 1514
Bst2UI CCWGG 3 cut(s) 208, 548, 1496
Bst4CI ACNGT 7 cut(s) 80, 167, 253, 278, 927, 1160, 1187
Bst6I CTCTTC 3 cut(s) 626, 791, 1257
BstACI GRCGYC 1 cut(s) 375
BstAFI CTTAAG 1 cut(s) 1021
BstAUI TGTACA 1 cut(s) 1392
BstBAI YACGTR 1 cut(s) 448
BstC8I GCNNGC 1 cut(s) 1305
BstDEI CTNAG 4 cut(s) 29, 399, 952, 1032
BstF5I GGATG 6 cut(s) 223, 313, 475, 1042, 1061, 1126
BstMAI GTCTC 1 cut(s) 575
BstMWI GCNNNNNNNGC 1 cut(s) 1437
BstNI CCWGG 3 cut(s) 208, 548, 1496
BstNSI RCATGY 1 cut(s) 1533
BstSCI CCNGG 4 cut(s) 206, 546, 1360, 1494
BstSNI TACGTA 1 cut(s) 448
BstV1I GCAGC 1 cut(s) 589
BstV2I GAAGAC 2 cut(s) 566, 1290
BstX2I RGATCY 5 cut(s) 394, 886, 1141, 1237, 1399
BstXI CCANNNNNNTGG 2 cut(s) 214, 506
BstYI RGATCY 5 cut(s) 394, 886, 1141, 1237, 1399
BsuI GTATCC 1 cut(s) 1148
BsuRI GGCC 2 cut(s) 1249, 1303
BtgZI GCGATG 2 cut(s) 519, 1446
BtrI CACGTC 1 cut(s) 476
BtsCI GGATG 6 cut(s) 223, 313, 475, 1042, 1061, 1126
BtsI GCAGTG 2 cut(s) 1355, 1428
BtsIMutI CAGTG 5 cut(s) 283, 630, 1197, 1355, 1428
Cac8I GCNNGC 1 cut(s) 1305
CciI TCATGA 1 cut(s) 1315
Cfr13I GGNCC 2 cut(s) 1076, 1194
CseI GACGC 1 cut(s) 364
Csp6I GTAC 5 cut(s) 132, 449, 1029, 1161, 1393
CviAII CATG 5 cut(s) 353, 371, 1148, 1316, 1530
CviJI RGCY 9 cut(s) 523, 602, 653, 977, 1008, 1249, 1303, 1307, 1506
CviKI_1 RGCY 9 cut(s) 523, 602, 653, 977, 1008, 1249, 1303, 1307, 1506
CviQI GTAC 5 cut(s) 132, 449, 1029, 1161, 1393
DdeI CTNAG 4 cut(s) 29, 399, 952, 1032
DraI TTTAAA 2 cut(s) 571, 1510
Eam1104I CTCTTC 3 cut(s) 626, 791, 1257
EarI CTCTTC 3 cut(s) 626, 791, 1257
Ecl136II GAGCTC 1 cut(s) 523
Eco105I TACGTA 1 cut(s) 448
Eco130I CCWWGG 2 cut(s) 499, 1514
Eco147I AGGCCT 1 cut(s) 1249
Eco24I GRGCYC 1 cut(s) 525
Eco47I GGWCC 2 cut(s) 1076, 1194
Eco53kI GAGCTC 1 cut(s) 523
EcoICRI GAGCTC 1 cut(s) 523
EcoRII CCWGG 3 cut(s) 206, 546, 1494
EcoT14I CCWWGG 2 cut(s) 499, 1514
EcoT38I GRGCYC 1 cut(s) 525
ErhI CCWWGG 2 cut(s) 499, 1514
FaeI CATG 5 cut(s) 356, 374, 1151, 1319, 1533
FaqI GGGAC 1 cut(s) 431
FatI CATG 5 cut(s) 352, 370, 1147, 1315, 1529
FauI CCCGC 1 cut(s) 36
FauNDI CATATG 1 cut(s) 1351
FbaI TGATCA 1 cut(s) 73
FblI GTMKAC 1 cut(s) 1182
Fnu4HI GCNGC 2 cut(s) 603, 1547
FokI GGATG 6 cut(s) 230, 320, 482, 1048, 1049, 1133
FriOI GRGCYC 1 cut(s) 525
Fsp4HI GCNGC 2 cut(s) 603, 1547
FspBI CTAG 6 cut(s) 69, 530, 690, 768, 1259, 1443
GluI GCNGC 2 cut(s) 603, 1547
GsuI CTGGAG 1 cut(s) 473
HaeIII GGCC 2 cut(s) 1249, 1303
HapII CCGG 2 cut(s) 818, 1361
HgaI GACGC 1 cut(s) 364
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 5 cut(s) 356, 374, 1151, 1319, 1533
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 1504
HinfI GANTC 6 cut(s) 37, 367, 980, 986, 1091, 1115
HpaII CCGG 2 cut(s) 818, 1361
HphI GGTGA 5 cut(s) 149, 179, 326, 350, 488
Hpy166II GTNNAC 8 cut(s) 163, 256, 512, 695, 1076, 1163, 1183, 1197
Hpy188I TCNGA 5 cut(s) 955, 985, 1096, 1114, 1120
Hpy8I GTNNAC 8 cut(s) 163, 256, 512, 695, 1076, 1163, 1183, 1197
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 4 cut(s) 421, 865, 1493, 1531
HpyCH4III ACNGT 7 cut(s) 80, 167, 253, 278, 927, 1160, 1187
HpyCH4IV ACGT 2 cut(s) 447, 475
HpyCH4V TGCA 5 cut(s) 884, 966, 1234, 1355, 1421
HpyF10VI GCNNNNNNNGC 1 cut(s) 1437
HpyF3I CTNAG 4 cut(s) 29, 399, 952, 1032
HpySE526I ACGT 2 cut(s) 447, 475
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 5 cut(s) 356, 374, 1151, 1319, 1533
Ksp22I TGATCA 1 cut(s) 73
LmnI GCTCC 1 cut(s) 228
Lsp1109I GCAGC 1 cut(s) 589
LweI GCATC 3 cut(s) 193, 523, 871
MaeI CTAG 6 cut(s) 69, 530, 690, 768, 1259, 1443
MaeII ACGT 2 cut(s) 447, 475
MaeIII GTNAC 1 cut(s) 1423
MflI RGATCY 5 cut(s) 394, 886, 1141, 1237, 1399
MhlI GDGCHC 2 cut(s) 525, 1134
MroXI GAANNNNTTC 1 cut(s) 775
MslI CAYNNNNRTG 4 cut(s) 69, 111, 279, 336
MspA1I CMGCKG 1 cut(s) 43
MspCI CTTAAG 1 cut(s) 1021
MspI CCGG 2 cut(s) 818, 1361
MspR9I CCNGG 4 cut(s) 208, 548, 1362, 1496
Mva1269I GAATGC 3 cut(s) 181, 331, 541
MvaI CCWGG 3 cut(s) 208, 548, 1496
MwoI GCNNNNNNNGC 1 cut(s) 1437
NciI CCSGG 1 cut(s) 1362
NdeI CATATG 1 cut(s) 1351
NlaIII CATG 5 cut(s) 356, 374, 1151, 1319, 1533
NlaIV GGNNCC 5 cut(s) 396, 660, 714, 1143, 1545
NmuCI GTSAC 1 cut(s) 1423
NspI RCATGY 1 cut(s) 1533
OliI CACNNNNGTG 1 cut(s) 279
PagI TCATGA 1 cut(s) 1315
PasI CCCWGGG 1 cut(s) 547
PceI AGGCCT 1 cut(s) 1249
PctI GAATGC 3 cut(s) 181, 331, 541
PdmI GAANNNNTTC 1 cut(s) 775
PfeI GAWTC 6 cut(s) 37, 367, 980, 986, 1091, 1115
PkrI GCNGC 2 cut(s) 604, 1548
Ppu21I YACGTR 1 cut(s) 448
PshBI ATTAAT 3 cut(s) 84, 1082, 1416
Psp124BI GAGCTC 1 cut(s) 525
Psp6I CCWGG 3 cut(s) 206, 546, 1494
PspGI CCWGG 3 cut(s) 206, 546, 1494
PspN4I GGNNCC 5 cut(s) 396, 660, 714, 1143, 1545
PspPI GGNCC 2 cut(s) 1076, 1194
PsuI RGATCY 5 cut(s) 394, 886, 1141, 1237, 1399
RsaI GTAC 5 cut(s) 133, 450, 1030, 1162, 1394
RsaNI GTAC 5 cut(s) 132, 449, 1029, 1161, 1393
RseI CAYNNNNRTG 4 cut(s) 69, 111, 279, 336
SacI GAGCTC 1 cut(s) 525
SatI GCNGC 2 cut(s) 603, 1547
Sau96I GGNCC 2 cut(s) 1076, 1194
ScrFI CCNGG 4 cut(s) 208, 548, 1362, 1496
SduI GDGCHC 2 cut(s) 525, 1134
SfaNI GCATC 3 cut(s) 193, 523, 871
SinI GGWCC 2 cut(s) 1076, 1194
SmiMI CAYNNNNRTG 4 cut(s) 69, 111, 279, 336
SmlI CTYRAG 2 cut(s) 836, 1021
SmoI CTYRAG 2 cut(s) 836, 1021
SnaBI TACGTA 1 cut(s) 448
SseBI AGGCCT 1 cut(s) 1249
SsiI CCGC 3 cut(s) 43, 1192, 1547
SspI AATATT 1 cut(s) 1489
SspMI CTAG 6 cut(s) 69, 530, 690, 768, 1259, 1443
SstI GAGCTC 1 cut(s) 525
StuI AGGCCT 1 cut(s) 1249
StyD4I CCNGG 4 cut(s) 206, 546, 1360, 1494
StyI CCWWGG 2 cut(s) 499, 1514
TaaI ACNGT 7 cut(s) 80, 167, 253, 278, 927, 1160, 1187
TaiI ACGT 2 cut(s) 450, 478
TaqI TCGA 3 cut(s) 378, 525, 1134
TatI WGTACW 2 cut(s) 1028, 1392
TauI GCSGC 1 cut(s) 1549
TfiI GAWTC 6 cut(s) 37, 367, 980, 986, 1091, 1115
TscAI CASTG 5 cut(s) 283, 630, 1204, 1362, 1428
TseFI GTSAC 1 cut(s) 1423
TseI GCWGC 1 cut(s) 602
Tsp45I GTSAC 1 cut(s) 1423
TspDTI ATGAA 7 cut(s) 75, 117, 138, 341, 432, 1098, 1113
TspGWI ACGGA 2 cut(s) 602, 687
TspRI CASTG 5 cut(s) 283, 630, 1204, 1362, 1428
Vha464I CTTAAG 1 cut(s) 1021
VpaK11BI GGWCC 2 cut(s) 1076, 1194
VspI ATTAAT 3 cut(s) 84, 1082, 1416
XapI RAATTY 7 cut(s) 439, 566, 592, 775, 802, 1068, 1367
XbaI TCTAGA 1 cut(s) 529
XceI RCATGY 1 cut(s) 1533
XmiI GTMKAC 1 cut(s) 1182
XmnI GAANNNNTTC 1 cut(s) 775
XspI CTAG 6 cut(s) 69, 530, 690, 768, 1259, 1443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.