Rh6CG390800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000931
Physical Location & Seq
Reverse (-)
57746475 .. 57748987
2513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG390800.1

Sequence Viewer

Length: 1752 bp
ATGGGGCCGGGTTCGGGGAGAAAGGTCATCAATTTAGAGGGAGGTGATGGTGAATTGGATGAGAGGACTGAGAGGCGTTTGAGGAGAAGGGGTATAGCTAATGGAATTTACAACCCCAATTTGCGTCGCAGTACCCCTAAGAAAAGCAGAAAGTGTAACGCACAAGTGGAGAACCTAATGTTGGATAAGGATTATGAGAAATACCTGAGTTTGATTCAGCGGGGTCGGGACTTGAATGAACATTCTAGTGATCACGGTATTAATGGGGATTGCGAGAATGAACATAATGATGATGGGAATGAACATCGTACTGGTGAAAATAATGATATTAGGTCTGTGGACGGTGATGGAAACAAGCATTCTGTTGATGACAATAATGATGCCAGGGTTGTGGATGGTAGTGGGAGCGAACATTCTGTTGATGATACTGTCAACTTGAAGTCTGTGGATCACGGTGGTGGTAGGAATGGACGATGTGGCGTGGATGATGGTGATGGTGGGAATGCTTATTTTGGTGATGGCAACATTCATGTTAATTCTTTGAATCATGCCGTCGATGATGATGATATTGATCCTCAGTATAAGATATTCTGGGACAATTTGAAGGAAGATGGAAATTCATACGTTCTGGAGATGGTTCAAGAGGATGGACGTGTGAAACAGATAAGGTATCACCAAGGTGATGGTTTACCTGATGAGCTCGATCTAGATGCCACGCATTCCCAGGGGAAACAGAAGACTGAATTTAAAAACAGGGAGACTATGGAAAATTTAGAGGATGCCCCAGAGAAAAGGTTTTCAGTGAAGAAGAAGAATGTAAAATTGGAAGCTCTGGAACCTGTTTCAGATGGAACAAATGTGTGTTCTAGTAAACGACCTCGTTTAGAGGTTCCAAACACTCCAAAAAGTTTAGGAAGTTCTCTGCAGAAAGACAAGACTGAAACTAGAAAAAATTCAAGGAGTGTCATTAAGAAGAGAAATTTAGAGGATCGTCCAGAGAAAAAGAATGGTCTTGAGAAAAAGAGTTCAATGTTGAAGAAGAATGTGAAGGAAGCAGGTGCAGATCCTCTTTCTGGTAGAACAAATGGGCGTTCTCATAAACAGTCTGGTTCAAAATATCTTCGGTTCTCAGAGGGTGGGTGCAATAGTGAAGCTGAATCTGATTCTAATCTAACAGATGACAGCTATCAAGAGTTCTTAAGTTGTACTAAGGATGATGGGAAAGTTATGGTATTTACATCCAGAATTTTTGGACCATTAATATATGATTCAGATGAAGAAAGTTCATCGGATTCAGATGTGATCGTGCTCGACAGGGATCCACATGAGGGATACCGTACACCAATTAAGATTGATGTAGACAGTCGGCGGTCCACTGAAAGTCATTCCCAGTTTAGGCAAGGGATTATGCAGGATCTTAAAAGGCCTTACCACCTAGAAGAGTATATCAATCTCTTGGAAGACTGGTCTCGCCAAAGGCCAGCCACAGGTCATGATAGAAATCTACGAAATGGAAATGTAAAATCATATGCACTGCCGGGGGAATTTGGGAAATCATATCAAGAGACGTACAAAGATCTGGCAGGAAAGATTGATGCAGTGACAGGCGATGATCGCCCTAGAAAGTTAAATCTTTTGCGTGGATTTTTCTACTGGTTGAAGAATATTTCCCAGGAAGGAAGCTTTAAACCTTGGAATGACAAAGCATGTTTGAAGGTGGTGCCGCAGACACTAAATAGGAGGACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

583

Amino Acids

65.79

Weight (kDa)

5.97

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1046
Acc36I ACCTGC 1 cut(s) 1046
AccB1I GGYRCC 1 cut(s) 1720
AccI GTMKAC 1 cut(s) 1359
AciI CCGC 3 cut(s) 220, 1369, 1724
AclWI GGATC 7 cut(s) 456, 566, 996, 1058, 1313, 1326, 1422
AcsI RAATTY 8 cut(s) 105, 616, 743, 769, 952, 979, 1245, 1544
AfaI GTAC 5 cut(s) 133, 310, 1207, 1339, 1571
AfiI CCNNNNNNNGG 6 cut(s) 14, 181, 1073, 1328, 1395, 1487
AflII CTTAAG 1 cut(s) 1198
AflIII ACRYGT 1 cut(s) 652
AjiI CACGTC 1 cut(s) 653
AjnI CCWGG 3 cut(s) 383, 723, 1671
AjuI GAANNNNNNNTTGG 4 cut(s) 164, 196, 806, 838
AleI CACNNNNGTG 2 cut(s) 456, 678
AluBI AGCT 6 cut(s) 98, 700, 830, 1154, 1185, 1683
AluI AGCT 6 cut(s) 98, 700, 830, 1154, 1185, 1683
Alw21I GWGCWC 2 cut(s) 702, 1311
Alw26I GTCTC 3 cut(s) 752, 1473, 1559
AlwI GGATC 7 cut(s) 456, 566, 996, 1058, 1313, 1326, 1422
AoxI GGCC 3 cut(s) 5, 1424, 1478
ApoI RAATTY 8 cut(s) 105, 616, 743, 769, 952, 979, 1245, 1544
AseI ATTAAT 2 cut(s) 261, 1259
Asp700I GAANNNNTTC 1 cut(s) 952
AspS9I GGNCC 3 cut(s) 5, 1253, 1371
AsuC2I CCSGG 2 cut(s) 9, 1539
AsuHPI GGTGA 8 cut(s) 56, 62, 326, 356, 503, 527, 665, 692
AvaII GGWCC 2 cut(s) 1253, 1371
BamHI GGATCC 1 cut(s) 1318
BanI GGYRCC 1 cut(s) 1720
BanII GRGCYC 1 cut(s) 702
BbsI GAAGAC 2 cut(s) 743, 1467
Bbv12I GWGCWC 2 cut(s) 702, 1311
BceAI ACGGC 1 cut(s) 536
BcgI CGANNNNNNTGC 2 cut(s) 692, 726
BciT130I CCWGG 3 cut(s) 385, 725, 1673
BciVI GTATCC 1 cut(s) 1325
BclI TGATCA 1 cut(s) 250
BcnI CCSGG 2 cut(s) 9, 1539
BcoDI GTCTC 3 cut(s) 752, 1473, 1559
BfaI CTAG 6 cut(s) 246, 707, 867, 945, 1436, 1620
BfmI CTRYAG 1 cut(s) 923
BfrI CTTAAG 1 cut(s) 1198
BfuAI ACCTGC 1 cut(s) 1046
BfuI GTATCC 1 cut(s) 1325
BglII AGATCT 1 cut(s) 1576
BisI GCNGC 1 cut(s) 1724
BlsI GCNGC 1 cut(s) 1725
Bme1390I CCNGG 5 cut(s) 9, 385, 725, 1539, 1673
Bme18I GGWCC 2 cut(s) 1253, 1371
BmgBI CACGTC 1 cut(s) 653
BmgT120I GGNCC 3 cut(s) 5, 1253, 1371
BmiI GGNNCC 5 cut(s) 6, 837, 891, 1320, 1722
BmrFI CCNGG 5 cut(s) 9, 385, 725, 1539, 1673
BmrI ACTGGG 1 cut(s) 1384
BmsI GCATC 4 cut(s) 370, 700, 769, 1585
BmuI ACTGGG 1 cut(s) 1384
BpiI GAAGAC 2 cut(s) 743, 1467
BpmI CTGGAG 1 cut(s) 650
BpuEI CTTGAG 1 cut(s) 1034
BpuMI CCSGG 2 cut(s) 9, 1539
BsaBI GATNNNNATC 3 cut(s) 570, 1167, 1500
BsaI GGTCTC 1 cut(s) 1473
BsaJI CCNNGG 7 cut(s) 384, 676, 723, 724, 1538, 1671, 1691
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 6 cut(s) 14, 181, 1073, 1328, 1395, 1487
Bse1I ACTGG 4 cut(s) 316, 1390, 1469, 1658
Bse8I GATNNNNATC 3 cut(s) 570, 1167, 1500
BseBI CCWGG 3 cut(s) 385, 725, 1673
BseDI CCNNGG 7 cut(s) 384, 676, 723, 724, 1538, 1671, 1691
BseGI GGATG 7 cut(s) 64, 400, 490, 652, 784, 1219, 1238
BseJI GATNNNNATC 3 cut(s) 570, 1167, 1500
BseLI CCNNNNNNNGG 6 cut(s) 14, 181, 1073, 1328, 1395, 1487
BseMII CTCAG 4 cut(s) 60, 197, 590, 1143
BseNI ACTGG 4 cut(s) 316, 1390, 1469, 1658
BseRI GAGGAG 1 cut(s) 97
BsgI GTGCAG 1 cut(s) 1080
BshFI GGCC 3 cut(s) 7, 1426, 1480
BshNI GGYRCC 1 cut(s) 1720
BsiHKAI GWGCWC 2 cut(s) 702, 1311
BsiSI CCGG 2 cut(s) 8, 1538
BslFI GGGAC 2 cut(s) 242, 608
BslI CCNNNNNNNGG 6 cut(s) 14, 181, 1073, 1328, 1395, 1487
BsmAI GTCTC 3 cut(s) 752, 1473, 1559
BsmBI CGTCTC 1 cut(s) 1559
BsmFI GGGAC 2 cut(s) 242, 608
BsmI GAATGC 3 cut(s) 358, 508, 718
BsnI GGCC 3 cut(s) 7, 1426, 1480
Bso31I GGTCTC 1 cut(s) 1473
Bsp1286I GDGCHC 2 cut(s) 702, 1311
BspACI CCGC 3 cut(s) 220, 1369, 1724
BspANI GGCC 3 cut(s) 7, 1426, 1480
BspCNI CTCAG 4 cut(s) 61, 198, 589, 1142
BspHI TCATGA 1 cut(s) 1492
BspLI GGNNCC 5 cut(s) 6, 837, 891, 1320, 1722
BspMAI CTGCAG 1 cut(s) 927
BspMI ACCTGC 1 cut(s) 1046
BspPI GGATC 7 cut(s) 456, 566, 996, 1058, 1313, 1326, 1422
BspT107I GGYRCC 1 cut(s) 1720
BspTI CTTAAG 1 cut(s) 1198
BspTNI GGTCTC 1 cut(s) 1473
BsrI ACTGG 4 cut(s) 316, 1390, 1469, 1658
BssECI CCNNGG 7 cut(s) 384, 676, 723, 724, 1538, 1671, 1691
BssT1I CCWWGG 2 cut(s) 676, 1691
Bst2UI CCWGG 3 cut(s) 385, 725, 1673
Bst4CI ACNGT 7 cut(s) 257, 344, 430, 455, 1104, 1337, 1364
Bst6I CTCTTC 2 cut(s) 968, 1434
BstAFI CTTAAG 1 cut(s) 1198
BstC8I GCNNGC 1 cut(s) 1482
BstDEI CTNAG 6 cut(s) 69, 138, 206, 576, 1129, 1209
BstF5I GGATG 7 cut(s) 64, 400, 490, 652, 784, 1219, 1238
BstMAI GTCTC 3 cut(s) 752, 1473, 1559
BstMWI GCNNNNNNNGC 1 cut(s) 1614
BstNI CCWGG 3 cut(s) 385, 725, 1673
BstNSI RCATGY 1 cut(s) 1710
BstSCI CCNGG 5 cut(s) 7, 383, 723, 1537, 1671
BstSFI CTRYAG 1 cut(s) 923
BstV2I GAAGAC 2 cut(s) 743, 1467
BstX2I RGATCY 4 cut(s) 1063, 1318, 1414, 1576
BstXI CCANNNNNNTGG 2 cut(s) 391, 683
BstYI RGATCY 4 cut(s) 1063, 1318, 1414, 1576
BsuI GTATCC 1 cut(s) 1325
BsuRI GGCC 3 cut(s) 7, 1426, 1480
BtgZI GCGATG 1 cut(s) 1623
BtrI CACGTC 1 cut(s) 653
BtsCI GGATG 7 cut(s) 64, 400, 490, 652, 784, 1219, 1238
BtsI GCAGTG 2 cut(s) 1532, 1605
BtsIMutI CAGTG 4 cut(s) 807, 1374, 1532, 1605
BveI ACCTGC 1 cut(s) 1046
Cac8I GCNNGC 1 cut(s) 1482
CciI TCATGA 1 cut(s) 1492
Cfr13I GGNCC 3 cut(s) 5, 1253, 1371
CseI GACGC 1 cut(s) 113
Csp6I GTAC 5 cut(s) 132, 309, 1206, 1338, 1570
CviAII CATG 5 cut(s) 530, 548, 1325, 1493, 1707
CviQI GTAC 5 cut(s) 132, 309, 1206, 1338, 1570
DdeI CTNAG 6 cut(s) 69, 138, 206, 576, 1129, 1209
DraI TTTAAA 2 cut(s) 748, 1687
Eam1104I CTCTTC 2 cut(s) 968, 1434
EarI CTCTTC 2 cut(s) 968, 1434
Ecl136II GAGCTC 1 cut(s) 700
Eco130I CCWWGG 2 cut(s) 676, 1691
Eco147I AGGCCT 1 cut(s) 1426
Eco24I GRGCYC 1 cut(s) 702
Eco31I GGTCTC 1 cut(s) 1473
Eco47I GGWCC 2 cut(s) 1253, 1371
Eco53kI GAGCTC 1 cut(s) 700
EcoICRI GAGCTC 1 cut(s) 700
EcoRII CCWGG 3 cut(s) 383, 723, 1671
EcoT14I CCWWGG 2 cut(s) 676, 1691
EcoT38I GRGCYC 1 cut(s) 702
ErhI CCWWGG 2 cut(s) 676, 1691
Esp3I CGTCTC 1 cut(s) 1559
FaeI CATG 5 cut(s) 533, 551, 1328, 1496, 1710
FaqI GGGAC 2 cut(s) 242, 608
FatI CATG 5 cut(s) 529, 547, 1324, 1492, 1706
FauI CCCGC 1 cut(s) 213
FauNDI CATATG 1 cut(s) 1528
FbaI TGATCA 1 cut(s) 250
FblI GTMKAC 1 cut(s) 1359
Fnu4HI GCNGC 1 cut(s) 1724
FokI GGATG 7 cut(s) 71, 407, 497, 659, 791, 1225, 1226
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 1 cut(s) 1724
FspBI CTAG 6 cut(s) 246, 707, 867, 945, 1436, 1620
GluI GCNGC 1 cut(s) 1724
GsuI CTGGAG 1 cut(s) 650
HaeIII GGCC 3 cut(s) 7, 1426, 1480
HapII CCGG 2 cut(s) 8, 1538
HgaI GACGC 1 cut(s) 113
Hin1II CATG 5 cut(s) 533, 551, 1328, 1496, 1710
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 1681
HinfI GANTC 6 cut(s) 214, 544, 1157, 1163, 1268, 1292
HpaII CCGG 2 cut(s) 8, 1538
HphI GGTGA 8 cut(s) 56, 62, 326, 356, 503, 527, 665, 692
Hpy166II GTNNAC 7 cut(s) 340, 433, 689, 872, 1340, 1360, 1374
Hpy188I TCNGA 6 cut(s) 847, 1132, 1162, 1273, 1291, 1297
Hpy8I GTNNAC 7 cut(s) 340, 433, 689, 872, 1340, 1360, 1374
Hpy99I CGWCG 2 cut(s) 129, 557
HpyAV CCTTC 5 cut(s) 81, 598, 1042, 1670, 1708
HpyCH4III ACNGT 7 cut(s) 257, 344, 430, 455, 1104, 1337, 1364
HpyCH4IV ACGT 3 cut(s) 624, 652, 1568
HpyCH4V TGCA 6 cut(s) 925, 1061, 1143, 1411, 1532, 1598
HpyF10VI GCNNNNNNNGC 1 cut(s) 1614
HpyF3I CTNAG 6 cut(s) 69, 138, 206, 576, 1129, 1209
HpySE526I ACGT 3 cut(s) 624, 652, 1568
Hsp92II CATG 5 cut(s) 533, 551, 1328, 1496, 1710
Ksp22I TGATCA 1 cut(s) 250
LmnI GCTCC 1 cut(s) 405
LweI GCATC 4 cut(s) 370, 700, 769, 1585
MaeI CTAG 6 cut(s) 246, 707, 867, 945, 1436, 1620
MaeII ACGT 3 cut(s) 624, 652, 1568
MaeIII GTNAC 2 cut(s) 155, 1600
MflI RGATCY 4 cut(s) 1063, 1318, 1414, 1576
MhlI GDGCHC 2 cut(s) 702, 1311
MmeI TCCRAC 1 cut(s) 162
MroXI GAANNNNTTC 1 cut(s) 952
MslI CAYNNNNRTG 4 cut(s) 246, 288, 456, 678
MspA1I CMGCKG 1 cut(s) 220
MspCI CTTAAG 1 cut(s) 1198
MspI CCGG 2 cut(s) 8, 1538
MspR9I CCNGG 5 cut(s) 9, 385, 725, 1539, 1673
Mva1269I GAATGC 3 cut(s) 358, 508, 718
MvaI CCWGG 3 cut(s) 385, 725, 1673
MwoI GCNNNNNNNGC 1 cut(s) 1614
NciI CCSGG 2 cut(s) 9, 1539
NdeI CATATG 1 cut(s) 1528
NlaIII CATG 5 cut(s) 533, 551, 1328, 1496, 1710
NlaIV GGNNCC 5 cut(s) 6, 837, 891, 1320, 1722
NmuCI GTSAC 1 cut(s) 1600
NspI RCATGY 1 cut(s) 1710
OliI CACNNNNGTG 2 cut(s) 456, 678
PagI TCATGA 1 cut(s) 1492
PaqCI CACCTGC 1 cut(s) 1046
PasI CCCWGGG 1 cut(s) 724
PceI AGGCCT 1 cut(s) 1426
PctI GAATGC 3 cut(s) 358, 508, 718
PdmI GAANNNNTTC 1 cut(s) 952
PfeI GAWTC 6 cut(s) 214, 544, 1157, 1163, 1268, 1292
PkrI GCNGC 1 cut(s) 1725
PshBI ATTAAT 2 cut(s) 261, 1259
Psp124BI GAGCTC 1 cut(s) 702
Psp6I CCWGG 3 cut(s) 383, 723, 1671
PspGI CCWGG 3 cut(s) 383, 723, 1671
PspN4I GGNNCC 5 cut(s) 6, 837, 891, 1320, 1722
PspPI GGNCC 3 cut(s) 5, 1253, 1371
PstI CTGCAG 1 cut(s) 927
PsuI RGATCY 4 cut(s) 1063, 1318, 1414, 1576
RsaI GTAC 5 cut(s) 133, 310, 1207, 1339, 1571
RsaNI GTAC 5 cut(s) 132, 309, 1206, 1338, 1570
RseI CAYNNNNRTG 4 cut(s) 246, 288, 456, 678
SacI GAGCTC 1 cut(s) 702
SatI GCNGC 1 cut(s) 1724
Sau96I GGNCC 3 cut(s) 5, 1253, 1371
ScrFI CCNGG 5 cut(s) 9, 385, 725, 1539, 1673
SduI GDGCHC 2 cut(s) 702, 1311
SfaNI GCATC 4 cut(s) 370, 700, 769, 1585
SfcI CTRYAG 1 cut(s) 923
SinI GGWCC 2 cut(s) 1253, 1371
SmiMI CAYNNNNRTG 4 cut(s) 246, 288, 456, 678
SmlI CTYRAG 2 cut(s) 1013, 1198
SmoI CTYRAG 2 cut(s) 1013, 1198
SseBI AGGCCT 1 cut(s) 1426
SsiI CCGC 3 cut(s) 220, 1369, 1724
SspI AATATT 1 cut(s) 1666
SspMI CTAG 6 cut(s) 246, 707, 867, 945, 1436, 1620
SstI GAGCTC 1 cut(s) 702
StuI AGGCCT 1 cut(s) 1426
StyD4I CCNGG 5 cut(s) 7, 383, 723, 1537, 1671
StyI CCWWGG 2 cut(s) 676, 1691
TaaI ACNGT 7 cut(s) 257, 344, 430, 455, 1104, 1337, 1364
TaiI ACGT 3 cut(s) 627, 655, 1571
TaqI TCGA 3 cut(s) 555, 702, 1311
TatI WGTACW 1 cut(s) 1205
TauI GCSGC 1 cut(s) 1726
TfiI GAWTC 6 cut(s) 214, 544, 1157, 1163, 1268, 1292
TscAI CASTG 4 cut(s) 807, 1381, 1539, 1605
TseFI GTSAC 1 cut(s) 1600
Tsp45I GTSAC 1 cut(s) 1600
TspDTI ATGAA 7 cut(s) 252, 294, 315, 518, 609, 1275, 1290
TspRI CASTG 4 cut(s) 807, 1381, 1539, 1605
Vha464I CTTAAG 1 cut(s) 1198
VpaK11BI GGWCC 2 cut(s) 1253, 1371
VspI ATTAAT 2 cut(s) 261, 1259
XapI RAATTY 8 cut(s) 105, 616, 743, 769, 952, 979, 1245, 1544
XbaI TCTAGA 1 cut(s) 706
XceI RCATGY 1 cut(s) 1710
XmiI GTMKAC 1 cut(s) 1359
XmnI GAANNNNTTC 1 cut(s) 952
XspI CTAG 6 cut(s) 246, 707, 867, 945, 1436, 1620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.