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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 204 |
| AccB1I | GGYRCC | 1 cut(s) | 204 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1529 |
| AccI | GTMKAC | 1 cut(s) | 1517 |
| AccII | CGCG | 1 cut(s) | 907 |
| AciI | CCGC | 2 cut(s) | 905, 1976 |
| AclWI | GGATC | 9 cut(s) | 153, 167, 180, 201, 429, 883, 896, 1218, 1680 |
| AcsI | RAATTY | 4 cut(s) | 124, 286, 1363, 1475 |
| AfaI | GTAC | 5 cut(s) | 206, 1018, 1074, 1688, 1823 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 214, 1013, 1529, 1654 |
| AgsI | TTSAA | 5 cut(s) | 556, 723, 736, 1775, 1963 |
| AjnI | CCWGG | 1 cut(s) | 1920 |
| AluBI | AGCT | 9 cut(s) | 152, 533, 587, 830, 1173, 1316, 1711, 1853, 1932 |
| AluI | AGCT | 9 cut(s) | 152, 533, 587, 830, 1173, 1316, 1711, 1853, 1932 |
| Alw21I | GWGCWC | 4 cut(s) | 353, 864, 1318, 1330 |
| Alw26I | GTCTC | 2 cut(s) | 941, 1745 |
| AlwI | GGATC | 9 cut(s) | 153, 167, 180, 201, 429, 883, 896, 1218, 1680 |
| Ama87I | CYCGRG | 1 cut(s) | 687 |
| AoxI | GGCC | 5 cut(s) | 322, 367, 402, 1682, 1736 |
| ApaI | GGGCCC | 1 cut(s) | 371 |
| ApeKI | GCWGC | 5 cut(s) | 830, 1127, 1173, 1850, 1972 |
| ApoI | RAATTY | 4 cut(s) | 124, 286, 1363, 1475 |
| AseI | ATTAAT | 1 cut(s) | 1281 |
| AsiSI | GCGATCGC | 1 cut(s) | 1864 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 960 |
| Asp718I | GGTACC | 1 cut(s) | 204 |
| AspS9I | GGNCC | 7 cut(s) | 6, 367, 368, 402, 923, 1372, 1736 |
| AsuC2I | CCSGG | 2 cut(s) | 886, 1889 |
| AsuHPI | GGTGA | 4 cut(s) | 128, 286, 703, 998 |
| AsuII | TTCGAA | 1 cut(s) | 260 |
| AvaI | CYCGRG | 1 cut(s) | 687 |
| AvaII | GGWCC | 3 cut(s) | 6, 923, 1372 |
| BaeGI | GKGCMC | 1 cut(s) | 371 |
| BamHI | GGATCC | 2 cut(s) | 172, 888 |
| BanI | GGYRCC | 1 cut(s) | 204 |
| BanII | GRGCYC | 4 cut(s) | 237, 371, 1310, 1318 |
| Bbv12I | GWGCWC | 4 cut(s) | 353, 864, 1318, 1330 |
| BbvCI | CCTCAGC | 1 cut(s) | 39 |
| BbvI | GCAGC | 5 cut(s) | 817, 1114, 1160, 1862, 1959 |
| BccI | CCATC | 4 cut(s) | 445, 1088, 1235, 1493 |
| BceAI | ACGGC | 2 cut(s) | 1669, 1873 |
| BciT130I | CCWGG | 1 cut(s) | 1922 |
| BciVI | GTATCC | 2 cut(s) | 70, 1606 |
| BcnI | CCSGG | 2 cut(s) | 886, 1889 |
| BcoDI | GTCTC | 2 cut(s) | 941, 1745 |
| BfaI | CTAG | 4 cut(s) | 476, 867, 1076, 1814 |
| BfmI | CTRYAG | 1 cut(s) | 1331 |
| BfuI | GTATCC | 2 cut(s) | 70, 1606 |
| BglII | AGATCT | 2 cut(s) | 1756, 1828 |
| BisI | GCNGC | 6 cut(s) | 831, 1128, 1174, 1851, 1973, 1976 |
| BlsI | GCNGC | 6 cut(s) | 832, 1129, 1175, 1852, 1974, 1977 |
| Bme1390I | CCNGG | 3 cut(s) | 886, 1889, 1922 |
| Bme18I | GGWCC | 3 cut(s) | 6, 923, 1372 |
| BmeT110I | CYCGRG | 1 cut(s) | 687 |
| BmgT120I | GGNCC | 7 cut(s) | 6, 367, 368, 402, 923, 1372, 1736 |
| BmiI | GGNNCC | 8 cut(s) | 7, 174, 206, 369, 471, 611, 883, 890 |
| BmrFI | CCNGG | 3 cut(s) | 886, 1889, 1922 |
| BmrI | ACTGGG | 2 cut(s) | 810, 1519 |
| BmsI | GCATC | 3 cut(s) | 1561, 1711, 1711 |
| BmuI | ACTGGG | 2 cut(s) | 810, 1519 |
| Bpu10I | CCTNAGC | 1 cut(s) | 39 |
| Bpu14I | TTCGAA | 1 cut(s) | 260 |
| BpuEI | CTTGAG | 2 cut(s) | 347, 1691 |
| BpuMI | CCSGG | 2 cut(s) | 886, 1889 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1098, 1209 |
| BsaI | GGTCTC | 1 cut(s) | 941 |
| BsaJI | CCNNGG | 7 cut(s) | 176, 613, 919, 1122, 1888, 1920, 1940 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 214, 1013, 1529, 1654 |
| Bse1I | ACTGG | 5 cut(s) | 805, 1363, 1514, 1648, 1907 |
| Bse3DI | GCAATG | 2 cut(s) | 1534, 1581 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1098, 1209 |
| BseBI | CCWGG | 1 cut(s) | 1922 |
| BseDI | CCNNGG | 7 cut(s) | 176, 613, 919, 1122, 1888, 1920, 1940 |
| BseGI | GGATG | 5 cut(s) | 67, 501, 810, 1250, 1504 |
| BseJI | GATNNNNATC | 2 cut(s) | 1098, 1209 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 214, 1013, 1529, 1654 |
| BseMI | GCAATG | 2 cut(s) | 1534, 1581 |
| BseMII | CTCAG | 5 cut(s) | 30, 284, 338, 1215, 1971 |
| BseNI | ACTGG | 5 cut(s) | 805, 1363, 1514, 1648, 1907 |
| BseRI | GAGGAG | 1 cut(s) | 1565 |
| BseSI | GKGCMC | 1 cut(s) | 371 |
| BseXI | GCAGC | 5 cut(s) | 817, 1114, 1160, 1862, 1959 |
| BseYI | CCCAGC | 1 cut(s) | 152 |
| BsgI | GTGCAG | 2 cut(s) | 582, 816 |
| Bsh1236I | CGCG | 1 cut(s) | 907 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1864 |
| BshFI | GGCC | 5 cut(s) | 324, 369, 404, 1684, 1738 |
| BshNI | GGYRCC | 1 cut(s) | 204 |
| BsiEI | CGRYCG | 1 cut(s) | 1864 |
| BsiHKAI | GWGCWC | 4 cut(s) | 353, 864, 1318, 1330 |
| BsiHKCI | CYCGRG | 1 cut(s) | 687 |
| BsiSI | CCGG | 2 cut(s) | 886, 1888 |
| BslFI | GGGAC | 3 cut(s) | 19, 1640, 1903 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 214, 1013, 1529, 1654 |
| BsmAI | GTCTC | 2 cut(s) | 941, 1745 |
| BsmFI | GGGAC | 3 cut(s) | 19, 1640, 1903 |
| BsnI | GGCC | 5 cut(s) | 324, 369, 404, 1684, 1738 |
| Bso31I | GGTCTC | 1 cut(s) | 941 |
| BsoBI | CYCGRG | 1 cut(s) | 687 |
| Bsp119I | TTCGAA | 1 cut(s) | 260 |
| Bsp120I | GGGCCC | 1 cut(s) | 367 |
| Bsp1286I | GDGCHC | 7 cut(s) | 237, 353, 371, 864, 1310, 1318, 1330 |
| Bsp1407I | TGTACA | 1 cut(s) | 1821 |
| Bsp19I | CCATGG | 1 cut(s) | 1940 |
| BspACI | CCGC | 2 cut(s) | 905, 1976 |
| BspANI | GGCC | 5 cut(s) | 324, 369, 404, 1684, 1738 |
| BspCNI | CTCAG | 5 cut(s) | 31, 283, 339, 1214, 1972 |
| BspFNI | CGCG | 1 cut(s) | 907 |
| BspLI | GGNNCC | 8 cut(s) | 7, 174, 206, 369, 471, 611, 883, 890 |
| BspMAI | CTGCAG | 1 cut(s) | 1335 |
| BspPI | GGATC | 9 cut(s) | 153, 167, 180, 201, 429, 883, 896, 1218, 1680 |
| BspQI | GCTCTTC | 1 cut(s) | 1692 |
| BspT104I | TTCGAA | 1 cut(s) | 260 |
| BspT107I | GGYRCC | 1 cut(s) | 204 |
| BspTNI | GGTCTC | 1 cut(s) | 941 |
| BsrDI | GCAATG | 2 cut(s) | 1534, 1581 |
| BsrGI | TGTACA | 1 cut(s) | 1821 |
| BsrI | ACTGG | 5 cut(s) | 805, 1363, 1514, 1648, 1907 |
| BssECI | CCNNGG | 7 cut(s) | 176, 613, 919, 1122, 1888, 1920, 1940 |
| BssNAI | GTATAC | 1 cut(s) | 1518 |
| BssT1I | CCWWGG | 2 cut(s) | 1122, 1940 |
| Bst1107I | GTATAC | 1 cut(s) | 1518 |
| Bst2UI | CCWGG | 1 cut(s) | 1922 |
| Bst4CI | ACNGT | 7 cut(s) | 614, 920, 1072, 1229, 1303, 1435, 1622 |
| Bst6I | CTCTTC | 2 cut(s) | 1029, 1692 |
| BstAUI | TGTACA | 1 cut(s) | 1821 |
| BstBI | TTCGAA | 1 cut(s) | 260 |
| BstC8I | GCNNGC | 1 cut(s) | 36 |
| BstDEI | CTNAG | 7 cut(s) | 39, 270, 347, 526, 1179, 1201, 1980 |
| BstDSI | CCRYGG | 3 cut(s) | 613, 919, 1940 |
| BstF5I | GGATG | 5 cut(s) | 67, 501, 810, 1250, 1504 |
| BstFNI | CGCG | 1 cut(s) | 907 |
| BstMAI | GTCTC | 2 cut(s) | 941, 1745 |
| BstMCI | CGRYCG | 1 cut(s) | 1864 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 836, 1708 |
| BstNI | CCWGG | 1 cut(s) | 1922 |
| BstNSI | RCATGY | 2 cut(s) | 839, 1728 |
| BstSCI | CCNGG | 3 cut(s) | 884, 1887, 1920 |
| BstSFI | CTRYAG | 1 cut(s) | 1331 |
| BstSLI | GKGCMC | 1 cut(s) | 371 |
| BstUI | CGCG | 1 cut(s) | 907 |
| BstV1I | GCAGC | 5 cut(s) | 817, 1114, 1160, 1862, 1959 |
| BstX2I | RGATCY | 7 cut(s) | 172, 421, 888, 1210, 1672, 1756, 1828 |
| BstYI | RGATCY | 7 cut(s) | 172, 421, 888, 1210, 1672, 1756, 1828 |
| BstZ17I | GTATAC | 1 cut(s) | 1518 |
| BsuI | GTATCC | 2 cut(s) | 70, 1606 |
| BsuRI | GGCC | 5 cut(s) | 324, 369, 404, 1684, 1738 |
| BtgI | CCRYGG | 3 cut(s) | 613, 919, 1940 |
| BtsCI | GGATG | 5 cut(s) | 67, 501, 810, 1250, 1504 |
| BtsI | GCAGTG | 1 cut(s) | 570 |
| BtsIMutI | CAGTG | 4 cut(s) | 509, 570, 1356, 1401 |
| Cac8I | GCNNGC | 1 cut(s) | 36 |
| Cfr13I | GGNCC | 7 cut(s) | 6, 367, 368, 402, 923, 1372, 1736 |
| CseI | GACGC | 1 cut(s) | 682 |
| Csp6I | GTAC | 5 cut(s) | 205, 1017, 1073, 1687, 1822 |
| CviAII | CATG | 5 cut(s) | 836, 1238, 1725, 1748, 1941 |
| CviQI | GTAC | 5 cut(s) | 205, 1017, 1073, 1687, 1822 |
| DdeI | CTNAG | 7 cut(s) | 39, 270, 347, 526, 1179, 1201, 1980 |
| DraI | TTTAAA | 1 cut(s) | 1878 |
| Eam1104I | CTCTTC | 2 cut(s) | 1029, 1692 |
| EarI | CTCTTC | 2 cut(s) | 1029, 1692 |
| Ecl136II | GAGCTC | 1 cut(s) | 1316 |
| Eco130I | CCWWGG | 2 cut(s) | 1122, 1940 |
| Eco24I | GRGCYC | 4 cut(s) | 237, 371, 1310, 1318 |
| Eco31I | GGTCTC | 1 cut(s) | 941 |
| Eco32I | GATATC | 1 cut(s) | 1100 |
| Eco47I | GGWCC | 3 cut(s) | 6, 923, 1372 |
| Eco53kI | GAGCTC | 1 cut(s) | 1316 |
| Eco88I | CYCGRG | 1 cut(s) | 687 |
| EcoICRI | GAGCTC | 1 cut(s) | 1316 |
| EcoO109I | RGGNCCY | 3 cut(s) | 6, 367, 1372 |
| EcoRI | GAATTC | 1 cut(s) | 1475 |
| EcoRII | CCWGG | 1 cut(s) | 1920 |
| EcoRV | GATATC | 1 cut(s) | 1100 |
| EcoT14I | CCWWGG | 2 cut(s) | 1122, 1940 |
| EcoT22I | ATGCAT | 1 cut(s) | 1726 |
| EcoT38I | GRGCYC | 4 cut(s) | 237, 371, 1310, 1318 |
| ErhI | CCWWGG | 2 cut(s) | 1122, 1940 |
| FaeI | CATG | 5 cut(s) | 839, 1241, 1728, 1751, 1944 |
| FaqI | GGGAC | 3 cut(s) | 19, 1640, 1903 |
| FatI | CATG | 5 cut(s) | 835, 1237, 1724, 1747, 1940 |
| FblI | GTMKAC | 1 cut(s) | 1517 |
| Fnu4HI | GCNGC | 6 cut(s) | 831, 1128, 1174, 1851, 1973, 1976 |
| FokI | GGATG | 5 cut(s) | 74, 508, 817, 1257, 1511 |
| FriOI | GRGCYC | 4 cut(s) | 237, 371, 1310, 1318 |
| Fsp4HI | GCNGC | 6 cut(s) | 831, 1128, 1174, 1851, 1973, 1976 |
| FspBI | CTAG | 4 cut(s) | 476, 867, 1076, 1814 |
| GluI | GCNGC | 6 cut(s) | 831, 1128, 1174, 1851, 1973, 1976 |
| GsaI | CCCAGC | 1 cut(s) | 156 |
| HaeIII | GGCC | 5 cut(s) | 324, 369, 404, 1684, 1738 |
| HapII | CCGG | 2 cut(s) | 886, 1888 |
| HgaI | GACGC | 1 cut(s) | 682 |
| Hin1II | CATG | 5 cut(s) | 839, 1241, 1728, 1751, 1944 |
| HindIII | AAGCTT | 2 cut(s) | 531, 1930 |
| HinfI | GANTC | 9 cut(s) | 485, 499, 593, 599, 1058, 1205, 1586, 1639, 1775 |
| HpaII | CCGG | 2 cut(s) | 886, 1888 |
| HphI | GGTGA | 4 cut(s) | 128, 286, 703, 998 |
| Hpy166II | GTNNAC | 5 cut(s) | 433, 923, 1518, 1535, 1822 |
| Hpy188III | TCNNGA | 3 cut(s) | 251, 476, 590 |
| Hpy8I | GTNNAC | 5 cut(s) | 433, 923, 1518, 1535, 1822 |
| Hpy99I | CGWCG | 1 cut(s) | 1092 |
| HpyAV | CCTTC | 5 cut(s) | 289, 1663, 1674, 1919, 1939 |
| HpyCH4III | ACNGT | 7 cut(s) | 614, 920, 1072, 1229, 1303, 1435, 1622 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 836, 1708 |
| HpyF3I | CTNAG | 7 cut(s) | 39, 270, 347, 526, 1179, 1201, 1980 |
| Hsp92II | CATG | 5 cut(s) | 839, 1241, 1728, 1751, 1944 |
| KpnI | GGTACC | 1 cut(s) | 208 |
| LguI | GCTCTTC | 1 cut(s) | 1692 |
| LmnI | GCTCC | 2 cut(s) | 907, 1552 |
| Lsp1109I | GCAGC | 5 cut(s) | 817, 1114, 1160, 1862, 1959 |
| LweI | GCATC | 3 cut(s) | 1561, 1711, 1711 |
| MaeI | CTAG | 4 cut(s) | 476, 867, 1076, 1814 |
| MaeIII | GTNAC | 4 cut(s) | 16, 914, 986, 1742 |
| MflI | RGATCY | 7 cut(s) | 172, 421, 888, 1210, 1672, 1756, 1828 |
| MhlI | GDGCHC | 7 cut(s) | 237, 353, 371, 864, 1310, 1318, 1330 |
| MluCI | AATT | 9 cut(s) | 65, 124, 133, 238, 286, 708, 1278, 1363, 1475 |
| MlyI | GAGTC | 1 cut(s) | 1648 |
| MmeI | TCCRAC | 2 cut(s) | 54, 587 |
| Mph1103I | ATGCAT | 1 cut(s) | 1726 |
| MroXI | GAANNNNTTC | 1 cut(s) | 960 |
| MseI | TTAA | 8 cut(s) | 224, 360, 537, 711, 819, 1281, 1764, 1877 |
| MslI | CAYNNNNRTG | 2 cut(s) | 942, 1236 |
| MspI | CCGG | 2 cut(s) | 886, 1888 |
| MspR9I | CCNGG | 3 cut(s) | 886, 1889, 1922 |
| MvaI | CCWGG | 1 cut(s) | 1922 |
| MvnI | CGCG | 1 cut(s) | 907 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 836, 1708 |
| NciI | CCSGG | 2 cut(s) | 886, 1889 |
| NcoI | CCATGG | 1 cut(s) | 1940 |
| NlaIII | CATG | 5 cut(s) | 839, 1241, 1728, 1751, 1944 |
| NlaIV | GGNNCC | 8 cut(s) | 7, 174, 206, 369, 471, 611, 883, 890 |
| NmuCI | GTSAC | 3 cut(s) | 16, 986, 1742 |
| NsiI | ATGCAT | 1 cut(s) | 1726 |
| NspI | RCATGY | 2 cut(s) | 839, 1728 |
| NspV | TTCGAA | 1 cut(s) | 260 |
| PciSI | GCTCTTC | 1 cut(s) | 1692 |
| PdmI | GAANNNNTTC | 1 cut(s) | 960 |
| PfeI | GAWTC | 8 cut(s) | 485, 499, 593, 599, 1058, 1205, 1586, 1775 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1529 |
| PfoI | TCCNGGA | 1 cut(s) | 884 |
| PkrI | GCNGC | 6 cut(s) | 832, 1129, 1175, 1852, 1974, 1977 |
| Ple19I | CGATCG | 1 cut(s) | 1864 |
| PleI | GAGTC | 1 cut(s) | 1647 |
| PpsI | GAGTC | 1 cut(s) | 1647 |
| PpuMI | RGGWCCY | 2 cut(s) | 6, 1372 |
| PshBI | ATTAAT | 1 cut(s) | 1281 |
| Psp124BI | GAGCTC | 1 cut(s) | 1318 |
| Psp5II | RGGWCCY | 2 cut(s) | 6, 1372 |
| Psp6I | CCWGG | 1 cut(s) | 1920 |
| PspFI | CCCAGC | 1 cut(s) | 152 |
| PspGI | CCWGG | 1 cut(s) | 1920 |
| PspN4I | GGNNCC | 8 cut(s) | 7, 174, 206, 369, 471, 611, 883, 890 |
| PspOMI | GGGCCC | 1 cut(s) | 367 |
| PspPI | GGNCC | 7 cut(s) | 6, 367, 368, 402, 923, 1372, 1736 |
| PspPPI | RGGWCCY | 2 cut(s) | 6, 1372 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1056, 1088 |
| PstI | CTGCAG | 1 cut(s) | 1335 |
| PsuI | RGATCY | 7 cut(s) | 172, 421, 888, 1210, 1672, 1756, 1828 |
| PvuI | CGATCG | 1 cut(s) | 1864 |
| RgaI | GCGATCGC | 1 cut(s) | 1864 |
| RsaI | GTAC | 5 cut(s) | 206, 1018, 1074, 1688, 1823 |
| RsaNI | GTAC | 5 cut(s) | 205, 1017, 1073, 1687, 1822 |
| RseI | CAYNNNNRTG | 2 cut(s) | 942, 1236 |
| SacI | GAGCTC | 1 cut(s) | 1318 |
| SapI | GCTCTTC | 1 cut(s) | 1692 |
| SaqAI | TTAA | 8 cut(s) | 224, 360, 537, 711, 819, 1281, 1764, 1877 |
| SatI | GCNGC | 6 cut(s) | 831, 1128, 1174, 1851, 1973, 1976 |
| Sau96I | GGNCC | 7 cut(s) | 6, 367, 368, 402, 923, 1372, 1736 |
| SchI | GAGTC | 1 cut(s) | 1648 |
| ScrFI | CCNGG | 3 cut(s) | 886, 1889, 1922 |
| SduI | GDGCHC | 7 cut(s) | 237, 353, 371, 864, 1310, 1318, 1330 |
| SfaAI | GCGATCGC | 1 cut(s) | 1864 |
| SfaNI | GCATC | 3 cut(s) | 1561, 1711, 1711 |
| SfcI | CTRYAG | 1 cut(s) | 1331 |
| SfuI | TTCGAA | 1 cut(s) | 260 |
| SgfI | GCGATCGC | 1 cut(s) | 1864 |
| SinI | GGWCC | 3 cut(s) | 6, 923, 1372 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 942, 1236 |
| SmlI | CTYRAG | 2 cut(s) | 326, 1706 |
| SmoI | CTYRAG | 2 cut(s) | 326, 1706 |
| Sse9I | AATT | 9 cut(s) | 65, 124, 133, 238, 286, 708, 1278, 1363, 1475 |
| SsiI | CCGC | 2 cut(s) | 905, 1976 |
| SspI | AATATT | 3 cut(s) | 47, 760, 1027 |
| SspMI | CTAG | 4 cut(s) | 476, 867, 1076, 1814 |
| SstI | GAGCTC | 1 cut(s) | 1318 |
| StyD4I | CCNGG | 3 cut(s) | 884, 1887, 1920 |
| StyI | CCWWGG | 2 cut(s) | 1122, 1940 |
| TaaI | ACNGT | 7 cut(s) | 614, 920, 1072, 1229, 1303, 1435, 1622 |
| TaqI | TCGA | 2 cut(s) | 260, 1087 |
| TasI | AATT | 9 cut(s) | 65, 124, 133, 238, 286, 708, 1278, 1363, 1475 |
| TatI | WGTACW | 2 cut(s) | 1072, 1821 |
| TauI | GCSGC | 1 cut(s) | 1978 |
| TfiI | GAWTC | 8 cut(s) | 485, 499, 593, 599, 1058, 1205, 1586, 1775 |
| Tru1I | TTAA | 8 cut(s) | 224, 360, 537, 711, 819, 1281, 1764, 1877 |
| Tru9I | TTAA | 8 cut(s) | 224, 360, 537, 711, 819, 1281, 1764, 1877 |
| TscAI | CASTG | 4 cut(s) | 509, 570, 1363, 1401 |
| TseFI | GTSAC | 3 cut(s) | 16, 986, 1742 |
| TseI | GCWGC | 5 cut(s) | 830, 1127, 1173, 1850, 1972 |
| Tsp45I | GTSAC | 3 cut(s) | 16, 986, 1742 |
| TspRI | CASTG | 4 cut(s) | 509, 570, 1363, 1401 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1529 |
| VpaK11BI | GGWCC | 3 cut(s) | 6, 923, 1372 |
| VspI | ATTAAT | 1 cut(s) | 1281 |
| XapI | RAATTY | 4 cut(s) | 124, 286, 1363, 1475 |
| XbaI | TCTAGA | 1 cut(s) | 475 |
| XceI | RCATGY | 2 cut(s) | 839, 1728 |
| XmiI | GTMKAC | 1 cut(s) | 1517 |
| XmnI | GAANNNNTTC | 1 cut(s) | 960 |
| XspI | CTAG | 4 cut(s) | 476, 867, 1076, 1814 |
| Zsp2I | ATGCAT | 1 cut(s) | 1726 |