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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 906 |
| AccB1I | GGYRCC | 1 cut(s) | 2707 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2234, 2575 |
| AccI | GTMKAC | 1 cut(s) | 2239 |
| AciI | CCGC | 7 cut(s) | 268, 589, 623, 745, 1478, 2626, 2711 |
| AcsI | RAATTY | 7 cut(s) | 331, 349, 493, 511, 670, 1237, 1369 |
| AcuI | CTGAAG | 2 cut(s) | 636, 1758 |
| AfaI | GTAC | 5 cut(s) | 1409, 2096, 2310, 2341, 2567 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 15, 1524, 1718, 2234, 2330, 2483, 2575 |
| AjnI | CCWGG | 2 cut(s) | 2059, 2658 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2424, 2456 |
| AluBI | AGCT | 8 cut(s) | 240, 1352, 1561, 2169, 2440, 2449, 2613, 2670 |
| AluI | AGCT | 8 cut(s) | 240, 1352, 1561, 2169, 2440, 2449, 2613, 2670 |
| Alw21I | GWGCWC | 2 cut(s) | 915, 1563 |
| Alw26I | GTCTC | 5 cut(s) | 692, 742, 1265, 1895, 2135 |
| Ama87I | CYCGRG | 1 cut(s) | 1596 |
| AoxI | GGCC | 6 cut(s) | 5, 1338, 1526, 1748, 2420, 2474 |
| ApaI | GGGCCC | 1 cut(s) | 9 |
| ApoI | RAATTY | 7 cut(s) | 331, 349, 493, 511, 670, 1237, 1369 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 782, 814, 2654, 2686 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 369, 531, 1447, 2439 |
| AspS9I | GGNCC | 3 cut(s) | 5, 6, 976 |
| AsuII | TTCGAA | 2 cut(s) | 109, 1095 |
| AvaI | CYCGRG | 1 cut(s) | 1596 |
| AvaII | GGWCC | 1 cut(s) | 976 |
| BaeGI | GKGCMC | 1 cut(s) | 9 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2086, 2119 |
| BamHI | GGATCC | 5 cut(s) | 142, 625, 1210, 1429, 2320 |
| BanI | GGYRCC | 1 cut(s) | 2707 |
| BanII | GRGCYC | 2 cut(s) | 9, 1563 |
| BauI | CACGAG | 1 cut(s) | 1374 |
| BbsI | GAAGAC | 4 cut(s) | 795, 963, 1922, 2463 |
| Bbv12I | GWGCWC | 2 cut(s) | 915, 1563 |
| BceAI | ACGGC | 1 cut(s) | 2435 |
| BciT130I | CCWGG | 2 cut(s) | 2061, 2660 |
| BclI | TGATCA | 1 cut(s) | 2586 |
| BcoDI | GTCTC | 5 cut(s) | 692, 742, 1265, 1895, 2135 |
| BfaI | CTAG | 4 cut(s) | 129, 1044, 1164, 2151 |
| BfmI | CTRYAG | 1 cut(s) | 1946 |
| BglII | AGATCT | 2 cut(s) | 764, 2572 |
| BisI | GCNGC | 2 cut(s) | 1479, 2711 |
| BlsI | GCNGC | 2 cut(s) | 1480, 2712 |
| Bme1390I | CCNGG | 2 cut(s) | 2061, 2660 |
| Bme18I | GGWCC | 1 cut(s) | 976 |
| BmeT110I | CYCGRG | 1 cut(s) | 1596 |
| BmgT120I | GGNCC | 3 cut(s) | 5, 6, 976 |
| BmrFI | CCNGG | 2 cut(s) | 2061, 2660 |
| BmrI | ACTGGG | 1 cut(s) | 1296 |
| BmsI | GCATC | 8 cut(s) | 272, 434, 445, 457, 593, 610, 708, 2677 |
| BmuI | ACTGGG | 1 cut(s) | 1296 |
| BoxI | GACNNNNGTC | 4 cut(s) | 936, 1056, 2245, 2334 |
| BpiI | GAAGAC | 4 cut(s) | 795, 963, 1922, 2463 |
| BpmI | CTGGAG | 5 cut(s) | 704, 1556, 1560, 2333, 2482 |
| Bpu14I | TTCGAA | 2 cut(s) | 109, 1095 |
| BpuEI | CTTGAG | 3 cut(s) | 193, 844, 2429 |
| BsaBI | GATNNNNATC | 4 cut(s) | 141, 303, 624, 1113 |
| BsaI | GGTCTC | 1 cut(s) | 1895 |
| BsaJI | CCNNGG | 5 cut(s) | 146, 1595, 1905, 2658, 2678 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 15, 1524, 1718, 2234, 2330, 2483, 2575 |
| Bse1I | ACTGG | 8 cut(s) | 687, 979, 1291, 1341, 1518, 2316, 2465, 2645 |
| Bse3DI | GCAATG | 1 cut(s) | 850 |
| Bse8I | GATNNNNATC | 4 cut(s) | 141, 303, 624, 1113 |
| BseBI | CCWGG | 2 cut(s) | 2061, 2660 |
| BseDI | CCNNGG | 5 cut(s) | 146, 1595, 1905, 2658, 2678 |
| BseJI | GATNNNNATC | 4 cut(s) | 141, 303, 624, 1113 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 15, 1524, 1718, 2234, 2330, 2483, 2575 |
| BseMI | GCAATG | 1 cut(s) | 850 |
| BseMII | CTCAG | 3 cut(s) | 485, 644, 1576 |
| BseNI | ACTGG | 8 cut(s) | 687, 979, 1291, 1341, 1518, 2316, 2465, 2645 |
| BseSI | GKGCMC | 1 cut(s) | 9 |
| BsgI | GTGCAG | 1 cut(s) | 1692 |
| BshFI | GGCC | 6 cut(s) | 7, 1340, 1528, 1750, 2422, 2476 |
| BshNI | GGYRCC | 1 cut(s) | 2707 |
| BsiHKAI | GWGCWC | 2 cut(s) | 915, 1563 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1596 |
| BslFI | GGGAC | 1 cut(s) | 2364 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 15, 1524, 1718, 2234, 2330, 2483, 2575 |
| BsmAI | GTCTC | 5 cut(s) | 692, 742, 1265, 1895, 2135 |
| BsmBI | CGTCTC | 1 cut(s) | 742 |
| BsmFI | GGGAC | 1 cut(s) | 2364 |
| BsmI | GAATGC | 2 cut(s) | 1471, 1735 |
| BsnI | GGCC | 6 cut(s) | 7, 1340, 1528, 1750, 2422, 2476 |
| Bso31I | GGTCTC | 1 cut(s) | 1895 |
| BsoBI | CYCGRG | 1 cut(s) | 1596 |
| Bsp119I | TTCGAA | 2 cut(s) | 109, 1095 |
| Bsp120I | GGGCCC | 1 cut(s) | 5 |
| Bsp1286I | GDGCHC | 3 cut(s) | 9, 915, 1563 |
| BspACI | CCGC | 7 cut(s) | 268, 589, 623, 745, 1478, 2626, 2711 |
| BspANI | GGCC | 6 cut(s) | 7, 1340, 1528, 1750, 2422, 2476 |
| BspCNI | CTCAG | 3 cut(s) | 484, 643, 1575 |
| BspQI | GCTCTTC | 2 cut(s) | 1551, 2430 |
| BspT104I | TTCGAA | 2 cut(s) | 109, 1095 |
| BspT107I | GGYRCC | 1 cut(s) | 2707 |
| BspTNI | GGTCTC | 1 cut(s) | 1895 |
| BsrDI | GCAATG | 1 cut(s) | 850 |
| BsrI | ACTGG | 8 cut(s) | 687, 979, 1291, 1341, 1518, 2316, 2465, 2645 |
| BssECI | CCNNGG | 5 cut(s) | 146, 1595, 1905, 2658, 2678 |
| BssSI | CACGAG | 1 cut(s) | 1374 |
| BssT1I | CCWWGG | 2 cut(s) | 1905, 2678 |
| Bst2BI | CACGAG | 1 cut(s) | 1374 |
| Bst2UI | CCWGG | 2 cut(s) | 2061, 2660 |
| Bst4CI | ACNGT | 5 cut(s) | 962, 1041, 1101, 1161, 2718 |
| Bst6I | CTCTTC | 3 cut(s) | 1551, 1893, 2430 |
| BstBI | TTCGAA | 2 cut(s) | 109, 1095 |
| BstC8I | GCNNGC | 2 cut(s) | 743, 2478 |
| BstDEI | CTNAG | 5 cut(s) | 471, 630, 1562, 2183, 2452 |
| BstEII | GGTNACC | 1 cut(s) | 1326 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2481 |
| BstMAI | GTCTC | 5 cut(s) | 692, 742, 1265, 1895, 2135 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 727, 1475, 2446 |
| BstNI | CCWGG | 2 cut(s) | 2061, 2660 |
| BstPAI | GACNNNNGTC | 4 cut(s) | 936, 1056, 2245, 2334 |
| BstPI | GGTNACC | 1 cut(s) | 1326 |
| BstSCI | CCNGG | 2 cut(s) | 2059, 2658 |
| BstSFI | CTRYAG | 1 cut(s) | 1946 |
| BstSLI | GKGCMC | 1 cut(s) | 9 |
| BstV2I | GAAGAC | 4 cut(s) | 795, 963, 1922, 2463 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1322 |
| BsuRI | GGCC | 6 cut(s) | 7, 1340, 1528, 1750, 2422, 2476 |
| BtsI | GCAGTG | 1 cut(s) | 1680 |
| BtsIMutI | CAGTG | 7 cut(s) | 680, 996, 1106, 1458, 1680, 1796, 2528 |
| Cac8I | GCNNGC | 2 cut(s) | 743, 2478 |
| Cfr13I | GGNCC | 3 cut(s) | 5, 6, 976 |
| CsiI | ACCWGGT | 1 cut(s) | 2059 |
| Csp6I | GTAC | 5 cut(s) | 1408, 2095, 2309, 2340, 2566 |
| CviAII | CATG | 8 cut(s) | 325, 839, 886, 1016, 1136, 1181, 1883, 2489 |
| CviQI | GTAC | 5 cut(s) | 1408, 2095, 2309, 2340, 2566 |
| DdeI | CTNAG | 5 cut(s) | 471, 630, 1562, 2183, 2452 |
| Eam1104I | CTCTTC | 3 cut(s) | 1551, 1893, 2430 |
| EarI | CTCTTC | 3 cut(s) | 1551, 1893, 2430 |
| EciI | GGCGGA | 1 cut(s) | 283 |
| Ecl136II | GAGCTC | 1 cut(s) | 1561 |
| Eco130I | CCWWGG | 2 cut(s) | 1905, 2678 |
| Eco147I | AGGCCT | 3 cut(s) | 1528, 1750, 2476 |
| Eco24I | GRGCYC | 2 cut(s) | 9, 1563 |
| Eco31I | GGTCTC | 1 cut(s) | 1895 |
| Eco32I | GATATC | 2 cut(s) | 883, 1310 |
| Eco47I | GGWCC | 1 cut(s) | 976 |
| Eco53kI | GAGCTC | 1 cut(s) | 1561 |
| Eco57I | CTGAAG | 2 cut(s) | 636, 1758 |
| Eco88I | CYCGRG | 1 cut(s) | 1596 |
| Eco91I | GGTNACC | 1 cut(s) | 1326 |
| EcoICRI | GAGCTC | 1 cut(s) | 1561 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2481 |
| EcoO109I | RGGNCCY | 1 cut(s) | 5 |
| EcoO65I | GGTNACC | 1 cut(s) | 1326 |
| EcoRI | GAATTC | 2 cut(s) | 349, 1369 |
| EcoRII | CCWGG | 2 cut(s) | 2059, 2658 |
| EcoRV | GATATC | 2 cut(s) | 883, 1310 |
| EcoT14I | CCWWGG | 2 cut(s) | 1905, 2678 |
| EcoT22I | ATGCAT | 4 cut(s) | 199, 287, 361, 449 |
| EcoT38I | GRGCYC | 2 cut(s) | 9, 1563 |
| ErhI | CCWWGG | 2 cut(s) | 1905, 2678 |
| Esp3I | CGTCTC | 1 cut(s) | 742 |
| FaeI | CATG | 8 cut(s) | 328, 842, 889, 1019, 1139, 1184, 1886, 2492 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 146, 178, 470, 502, 629, 661, 2424, 2456 |
| FaqI | GGGAC | 1 cut(s) | 2364 |
| FatI | CATG | 8 cut(s) | 324, 838, 885, 1015, 1135, 1180, 1882, 2488 |
| FauI | CCCGC | 1 cut(s) | 2619 |
| FauNDI | CATATG | 5 cut(s) | 193, 355, 676, 2221, 2251 |
| FbaI | TGATCA | 1 cut(s) | 2586 |
| FblI | GTMKAC | 1 cut(s) | 2239 |
| Fnu4HI | GCNGC | 2 cut(s) | 1479, 2711 |
| FriOI | GRGCYC | 2 cut(s) | 9, 1563 |
| Fsp4HI | GCNGC | 2 cut(s) | 1479, 2711 |
| FspBI | CTAG | 4 cut(s) | 129, 1044, 1164, 2151 |
| GluI | GCNGC | 2 cut(s) | 1479, 2711 |
| GsuI | CTGGAG | 5 cut(s) | 704, 1556, 1560, 2333, 2482 |
| HaeIII | GGCC | 6 cut(s) | 7, 1340, 1528, 1750, 2422, 2476 |
| Hin1II | CATG | 8 cut(s) | 328, 842, 889, 1019, 1139, 1184, 1886, 2492 |
| HincII | GTYRAC | 1 cut(s) | 1075 |
| HindII | GTYRAC | 1 cut(s) | 1075 |
| HindIII | AAGCTT | 2 cut(s) | 2611, 2668 |
| HinfI | GANTC | 9 cut(s) | 1472, 1708, 1940, 2147, 2246, 2284, 2294, 2357, 2631 |
| Hpy166II | GTNNAC | 3 cut(s) | 1075, 1410, 2240 |
| Hpy8I | GTNNAC | 3 cut(s) | 1075, 1410, 2240 |
| HpyAV | CCTTC | 6 cut(s) | 258, 420, 967, 2003, 2347, 2401 |
| HpyCH4III | ACNGT | 5 cut(s) | 962, 1041, 1101, 1161, 2718 |
| HpyCH4IV | ACGT | 1 cut(s) | 2522 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 727, 1475, 2446 |
| HpyF3I | CTNAG | 5 cut(s) | 471, 630, 1562, 2183, 2452 |
| HpySE526I | ACGT | 1 cut(s) | 2522 |
| Hsp92II | CATG | 8 cut(s) | 328, 842, 889, 1019, 1139, 1184, 1886, 2492 |
| Ksp22I | TGATCA | 1 cut(s) | 2586 |
| LguI | GCTCTTC | 2 cut(s) | 1551, 2430 |
| LmnI | GCTCC | 1 cut(s) | 591 |
| LweI | GCATC | 8 cut(s) | 272, 434, 445, 457, 593, 610, 708, 2677 |
| MabI | ACCWGGT | 1 cut(s) | 2059 |
| MaeI | CTAG | 4 cut(s) | 129, 1044, 1164, 2151 |
| MaeII | ACGT | 1 cut(s) | 2522 |
| MaeIII | GTNAC | 3 cut(s) | 706, 1326, 2465 |
| MfeI | CAATTG | 1 cut(s) | 2325 |
| MhlI | GDGCHC | 3 cut(s) | 9, 915, 1563 |
| MlyI | GAGTC | 2 cut(s) | 2255, 2293 |
| MmeI | TCCRAC | 2 cut(s) | 765, 1010 |
| Mph1103I | ATGCAT | 4 cut(s) | 199, 287, 361, 449 |
| MroXI | GAANNNNTTC | 4 cut(s) | 369, 531, 1447, 2439 |
| MseI | TTAA | 7 cut(s) | 834, 1005, 1185, 2303, 2349, 2415, 2615 |
| MslI | CAYNNNNRTG | 6 cut(s) | 411, 573, 843, 864, 1020, 1140 |
| MspA1I | CMGCKG | 1 cut(s) | 1478 |
| MspR9I | CCNGG | 2 cut(s) | 2061, 2660 |
| MunI | CAATTG | 1 cut(s) | 2325 |
| Mva1269I | GAATGC | 2 cut(s) | 1471, 1735 |
| MvaI | CCWGG | 2 cut(s) | 2061, 2660 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 727, 1475, 2446 |
| NdeI | CATATG | 5 cut(s) | 193, 355, 676, 2221, 2251 |
| NlaIII | CATG | 8 cut(s) | 328, 842, 889, 1019, 1139, 1184, 1886, 2492 |
| NmeAIII | GCCGAG | 2 cut(s) | 127, 1682 |
| NsiI | ATGCAT | 4 cut(s) | 199, 287, 361, 449 |
| NspV | TTCGAA | 2 cut(s) | 109, 1095 |
| PceI | AGGCCT | 3 cut(s) | 1528, 1750, 2476 |
| PciSI | GCTCTTC | 2 cut(s) | 1551, 2430 |
| PctI | GAATGC | 2 cut(s) | 1471, 1735 |
| PdmI | GAANNNNTTC | 4 cut(s) | 369, 531, 1447, 2439 |
| PfeI | GAWTC | 7 cut(s) | 1472, 1708, 1940, 2147, 2294, 2357, 2631 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2234, 2575 |
| PkrI | GCNGC | 2 cut(s) | 1480, 2712 |
| PleI | GAGTC | 2 cut(s) | 2254, 2292 |
| PpsI | GAGTC | 2 cut(s) | 2254, 2292 |
| PshAI | GACNNNNGTC | 4 cut(s) | 936, 1056, 2245, 2334 |
| PsiI | TTATAA | 1 cut(s) | 906 |
| Psp124BI | GAGCTC | 1 cut(s) | 1563 |
| Psp6I | CCWGG | 2 cut(s) | 2059, 2658 |
| PspEI | GGTNACC | 1 cut(s) | 1326 |
| PspGI | CCWGG | 2 cut(s) | 2059, 2658 |
| PspOMI | GGGCCC | 1 cut(s) | 5 |
| PspPI | GGNCC | 3 cut(s) | 5, 6, 976 |
| PsrI | GAACNNNNNNTAC | 6 cut(s) | 305, 337, 467, 499, 626, 658 |
| RsaI | GTAC | 5 cut(s) | 1409, 2096, 2310, 2341, 2567 |
| RsaNI | GTAC | 5 cut(s) | 1408, 2095, 2309, 2340, 2566 |
| RseI | CAYNNNNRTG | 6 cut(s) | 411, 573, 843, 864, 1020, 1140 |
| SacI | GAGCTC | 1 cut(s) | 1563 |
| SapI | GCTCTTC | 2 cut(s) | 1551, 2430 |
| SaqAI | TTAA | 7 cut(s) | 834, 1005, 1185, 2303, 2349, 2415, 2615 |
| SatI | GCNGC | 2 cut(s) | 1479, 2711 |
| Sau96I | GGNCC | 3 cut(s) | 5, 6, 976 |
| SchI | GAGTC | 2 cut(s) | 2255, 2293 |
| ScrFI | CCNGG | 2 cut(s) | 2061, 2660 |
| SduI | GDGCHC | 3 cut(s) | 9, 915, 1563 |
| SexAI | ACCWGGT | 1 cut(s) | 2059 |
| SfaNI | GCATC | 8 cut(s) | 272, 434, 445, 457, 593, 610, 708, 2677 |
| SfcI | CTRYAG | 1 cut(s) | 1946 |
| SfuI | TTCGAA | 2 cut(s) | 109, 1095 |
| SinI | GGWCC | 1 cut(s) | 976 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 411, 573, 843, 864, 1020, 1140 |
| SmlI | CTYRAG | 3 cut(s) | 172, 823, 2444 |
| SmoI | CTYRAG | 3 cut(s) | 172, 823, 2444 |
| SseBI | AGGCCT | 3 cut(s) | 1528, 1750, 2476 |
| SsiI | CCGC | 7 cut(s) | 268, 589, 623, 745, 1478, 2626, 2711 |
| SspI | AATATT | 1 cut(s) | 1633 |
| SspMI | CTAG | 4 cut(s) | 129, 1044, 1164, 2151 |
| SstI | GAGCTC | 1 cut(s) | 1563 |
| StuI | AGGCCT | 3 cut(s) | 1528, 1750, 2476 |
| StyD4I | CCNGG | 2 cut(s) | 2059, 2658 |
| StyI | CCWWGG | 2 cut(s) | 1905, 2678 |
| TaaI | ACNGT | 5 cut(s) | 962, 1041, 1101, 1161, 2718 |
| TaiI | ACGT | 1 cut(s) | 2525 |
| TaqI | TCGA | 2 cut(s) | 109, 1095 |
| TatI | WGTACW | 1 cut(s) | 2308 |
| TauI | GCSGC | 2 cut(s) | 1481, 2713 |
| TfiI | GAWTC | 7 cut(s) | 1472, 1708, 1940, 2147, 2294, 2357, 2631 |
| Tru1I | TTAA | 7 cut(s) | 834, 1005, 1185, 2303, 2349, 2415, 2615 |
| Tru9I | TTAA | 7 cut(s) | 834, 1005, 1185, 2303, 2349, 2415, 2615 |
| TscAI | CASTG | 7 cut(s) | 687, 1003, 1106, 1458, 1680, 1803, 2535 |
| TspGWI | ACGGA | 4 cut(s) | 725, 930, 1180, 2346 |
| TspRI | CASTG | 7 cut(s) | 687, 1003, 1106, 1458, 1680, 1803, 2535 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2234, 2575 |
| VpaK11BI | GGWCC | 1 cut(s) | 976 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2481 |
| XapI | RAATTY | 7 cut(s) | 331, 349, 493, 511, 670, 1237, 1369 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1228 |
| XmiI | GTMKAC | 1 cut(s) | 2239 |
| XmnI | GAANNNNTTC | 4 cut(s) | 369, 531, 1447, 2439 |
| XspI | CTAG | 4 cut(s) | 129, 1044, 1164, 2151 |
| Zsp2I | ATGCAT | 4 cut(s) | 199, 287, 361, 449 |