AT3G07730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000931
Physical Location & Seq
Forward (+)
2467862 .. 2469801
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07730.2

Sequence Viewer

Length: 1422 bp
ATGAAGAAGAAAGCCATTGTGATTGATGATGGATATACAAGGTTTATGGTGAATGAAATGTCTGAAAAAATCGATGTTCCAATTATCTGTCTTGACGAAGATGATGATGATGATGATCTTATGGTTGATAAGGAGTACAACGTCTTCTTGGATCATCTTCGAAGAGGTGATAAGAAAAGTTCAAGCACTCGCCTTGAAGTTGACAATGGAGCATCTGACATTCGTAGATTAAAGATCTTTTCTTGTGATTCAAAGAGATCTAAGCTTGGGAATGAGAATCCAGTGAAGAACAGAGTTAATCAACAGAGCAAGAGGAAAACTGTTGGAGTTGAGGTTGAAAGAGTTAAAATCCGAGAAATCATTCAAAGAGACAACAGAGTTGCTGAACGAAGAAAGCGGAGGATCGCAGAGTTAGAAGCTGCAAAGACTTCAAGAGACGTTCCTTCACTCGAAACCCAACAAGAAGACATTCAACAACGAGACAACAAAGTTAGGAAACTTTCCGAGTCAAAGGCTGAGACTTTAAGAAGAGATGATGTTCCATTGGTTAAAACTCAAGAAGACATTCAAAGAGACAACAGAGTTGCTGAACGAAGAAAGAGGAAATGTGACGATGCTTTAATAAAAGATGTTCCATTGGTTAGAACTGAAGAAGACAAGAGGGTTGCTGTGGAGATTGATCACGTAGAGCGAGTACATAGAGTTACAGAGGTTAATGATGTAGATGAGACTTCTTCAAGGAGCAAAGAAGTTTTTGTAGGGAGAAGGAAGAAGAATGAGGGGAGTGAAGCGGTTGTGGATAAGGATTACATGAGGTACCTCACATGGCTTGTAGATTCTCTTAGCGATTCGACAACTGAGCCAATGGAAAATCTTCAGAAAGATGATATGGATACTCTAAAAGAATCGACAATGGTACCTGAATTGGATCCACTAGTAGAAGTGAAGGTTGAACCACATGATGATTGGTCTGATTATATAATTGCGATGGGTGATTCCCCTTTTTTGGATGGAGAGGAGTGTACACCGTTTGTGGCGTCCAAGAAAGTGGTTGATCTTGATGAAGGAAGCAAAGAGAATGAAAGTAGTAGCAGTTGGTTTAGAAAGGAGCTAATGGATGTTTTGAAAAATCCATATGATGAAGGAGAGATGAAGCAGCTCCATCGTTACGTATCAATCCATAAAAAAATGACTCGATGCAGAGAACTACGAAAGGGAAGAGGATCTGATTATGAGACTGACGAACTGGGACAATCTTATCTAGAAAGTTTCCCTGATTTCGAAAAAGAATACAAGCTTGTGGTTGGTGTTGATAAGGCAAGAGCTTTGAAGTTGCTGCGTGGCTTTTTCTTTTACTTGAAATATGTTTCTCATGATGGTGTTTTCAAGCCTTGGGAGAAGACTCAAAGTTGGCAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

473

Amino Acids

55.32

Weight (kDa)

5.5

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 816, 916
AccB1I GGYRCC 2 cut(s) 816, 916
AciI CCGC 2 cut(s) 397, 791
AclWI GGATC 5 cut(s) 159, 410, 923, 936, 1231
AcuI CTGAAG 2 cut(s) 669, 860
AcyI GRCGYC 1 cut(s) 1037
AfaI GTAC 5 cut(s) 137, 696, 818, 918, 1024
AfiI CCNNNNNNNGG 1 cut(s) 1006
AhlI ACTAGT 1 cut(s) 934
AluBI AGCT 6 cut(s) 265, 419, 1111, 1159, 1297, 1325
AluI AGCT 6 cut(s) 265, 419, 1111, 1159, 1297, 1325
Alw26I GTCTC 7 cut(s) 363, 429, 474, 512, 567, 722, 1229
AlwI GGATC 5 cut(s) 159, 410, 923, 936, 1231
ApeKI GCWGC 3 cut(s) 419, 1156, 1336
Asp700I GAANNNNTTC 4 cut(s) 360, 468, 564, 873
Asp718I GGTACC 2 cut(s) 816, 916
AsuHPI GGTGA 3 cut(s) 61, 179, 1004
AsuII TTCGAA 2 cut(s) 160, 1281
BaeI ACNNNNGTAYC 2 cut(s) 900, 933
BamHI GGATCC 1 cut(s) 928
BanI GGYRCC 2 cut(s) 816, 916
BarI GAAGNNNNNNTAC 2 cut(s) 128, 160
BbsI GAAGAC 5 cut(s) 136, 471, 567, 660, 1406
BbvI GCAGC 3 cut(s) 406, 1168, 1323
BccI CCATC 5 cut(s) 23, 982, 1004, 1170, 1370
BcgI CGANNNNNNTGC 2 cut(s) 1145, 1179
BciVI GTATCC 1 cut(s) 886
BclI TGATCA 1 cut(s) 679
BcoDI GTCTC 7 cut(s) 363, 429, 474, 512, 567, 722, 1229
BcuI ACTAGT 1 cut(s) 934
BfaI CTAG 2 cut(s) 935, 1262
BfuI GTATCC 1 cut(s) 886
BglII AGATCT 2 cut(s) 234, 257
BisI GCNGC 3 cut(s) 420, 1157, 1337
BlsI GCNGC 3 cut(s) 421, 1158, 1338
BmiI GGNNCC 3 cut(s) 818, 918, 930
BmrI ACTGGG 1 cut(s) 1256
BmsI GCATC 3 cut(s) 221, 604, 1187
BmuI ACTGGG 1 cut(s) 1256
BpiI GAAGAC 5 cut(s) 136, 471, 567, 660, 1406
Bpu14I TTCGAA 2 cut(s) 160, 1281
BpuEI CTTGAG 1 cut(s) 540
Bsa29I ATCGAT 1 cut(s) 72
BsaAI YACGTR 2 cut(s) 685, 1171
BsaBI GATNNNNATC 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 1037
BsaJI CCNNGG 1 cut(s) 1391
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 1 cut(s) 1006
Bse1I ACTGG 2 cut(s) 281, 1251
Bse8I GATNNNNATC 1 cut(s) 114
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 1391
BseGI GGATG 2 cut(s) 1015, 1123
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 1006
BseMII CTCAG 2 cut(s) 507, 849
BseNI ACTGG 2 cut(s) 281, 1251
BseRI GAGGAG 1 cut(s) 1031
BseXI GCAGC 3 cut(s) 406, 1168, 1323
BshNI GGYRCC 2 cut(s) 816, 916
BshVI ATCGAT 1 cut(s) 72
BslFI GGGAC 1 cut(s) 1263
BslI CCNNNNNNNGG 1 cut(s) 1006
BsmAI GTCTC 7 cut(s) 363, 429, 474, 512, 567, 722, 1229
BsmBI CGTCTC 1 cut(s) 429
BsmFI GGGAC 1 cut(s) 1263
Bsp119I TTCGAA 2 cut(s) 160, 1281
Bsp1407I TGTACA 1 cut(s) 1022
Bsp143I GATC 9 cut(s) 115, 151, 234, 257, 402, 679, 928, 1054, 1223
BspACI CCGC 2 cut(s) 397, 791
BspCNI CTCAG 2 cut(s) 508, 850
BspDI ATCGAT 1 cut(s) 72
BspHI TCATGA 1 cut(s) 1372
BspLI GGNNCC 3 cut(s) 818, 918, 930
BspPI GGATC 5 cut(s) 159, 410, 923, 936, 1231
BspT104I TTCGAA 2 cut(s) 160, 1281
BspT107I GGYRCC 2 cut(s) 816, 916
BsrGI TGTACA 1 cut(s) 1022
BsrI ACTGG 2 cut(s) 281, 1251
BssECI CCNNGG 1 cut(s) 1391
BssMI GATC 9 cut(s) 115, 151, 234, 257, 402, 679, 928, 1054, 1223
BssNI GRCGYC 1 cut(s) 1037
BssT1I CCWWGG 1 cut(s) 1391
Bst4CI ACNGT 2 cut(s) 322, 1029
Bst6I CTCTTC 3 cut(s) 157, 523, 1213
BstACI GRCGYC 1 cut(s) 1037
BstAUI TGTACA 1 cut(s) 1022
BstBAI YACGTR 2 cut(s) 685, 1171
BstBI TTCGAA 2 cut(s) 160, 1281
BstDEI CTNAG 5 cut(s) 261, 516, 842, 858, 1419
BstF5I GGATG 2 cut(s) 1015, 1123
BstKTI GATC 9 cut(s) 118, 154, 237, 260, 405, 682, 931, 1057, 1226
BstMAI GTCTC 7 cut(s) 363, 429, 474, 512, 567, 722, 1229
BstMBI GATC 9 cut(s) 115, 151, 234, 257, 402, 679, 928, 1054, 1223
BstSNI TACGTA 1 cut(s) 1171
BstV1I GCAGC 3 cut(s) 406, 1168, 1323
BstV2I GAAGAC 5 cut(s) 136, 471, 567, 660, 1406
BstX2I RGATCY 4 cut(s) 234, 257, 928, 1223
BstXI CCANNNNNNTGG 1 cut(s) 1048
BstYI RGATCY 4 cut(s) 234, 257, 928, 1223
Bsu15I ATCGAT 1 cut(s) 72
BsuI GTATCC 1 cut(s) 886
BsuTUI ATCGAT 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 1001
BtsCI GGATG 2 cut(s) 1015, 1123
BtsIMutI CAGTG 1 cut(s) 288
CciI TCATGA 1 cut(s) 1372
ClaI ATCGAT 1 cut(s) 72
CseI GACGC 1 cut(s) 1026
Csp6I GTAC 5 cut(s) 136, 695, 817, 917, 1023
CviAII CATG 4 cut(s) 811, 825, 959, 1373
CviQI GTAC 5 cut(s) 136, 695, 817, 917, 1023
DdeI CTNAG 5 cut(s) 261, 516, 842, 858, 1419
DpnI GATC 9 cut(s) 117, 153, 236, 259, 404, 681, 930, 1056, 1225
DpnII GATC 9 cut(s) 115, 151, 234, 257, 402, 679, 928, 1054, 1223
Eam1104I CTCTTC 3 cut(s) 157, 523, 1213
EarI CTCTTC 3 cut(s) 157, 523, 1213
Eco105I TACGTA 1 cut(s) 1171
Eco130I CCWWGG 1 cut(s) 1391
Eco57I CTGAAG 2 cut(s) 669, 860
EcoT14I CCWWGG 1 cut(s) 1391
ErhI CCWWGG 1 cut(s) 1391
Esp3I CGTCTC 1 cut(s) 429
FaeI CATG 4 cut(s) 814, 828, 962, 1376
FaqI GGGAC 1 cut(s) 1263
FatI CATG 4 cut(s) 810, 824, 958, 1372
FauNDI CATATG 1 cut(s) 1135
FbaI TGATCA 1 cut(s) 679
Fnu4HI GCNGC 3 cut(s) 420, 1157, 1337
FokI GGATG 2 cut(s) 1022, 1130
Fsp4HI GCNGC 3 cut(s) 420, 1157, 1337
FspBI CTAG 2 cut(s) 935, 1262
GluI GCNGC 3 cut(s) 420, 1157, 1337
HgaI GACGC 1 cut(s) 1026
Hin1I GRCGYC 1 cut(s) 1037
Hin1II CATG 4 cut(s) 814, 828, 962, 1376
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 2 cut(s) 263, 1295
HinfI GANTC 9 cut(s) 248, 277, 506, 836, 848, 905, 995, 1192, 1402
HphI GGTGA 3 cut(s) 61, 179, 1004
Hpy166II GTNNAC 3 cut(s) 202, 1023, 1025
Hpy188I TCNGA 7 cut(s) 64, 217, 353, 505, 879, 973, 1228
Hpy188III TCNNGA 6 cut(s) 92, 432, 557, 1058, 1262, 1373
Hpy8I GTNNAC 3 cut(s) 202, 1023, 1025
HpyAV CCTTC 5 cut(s) 453, 759, 940, 1058, 1136
HpyCH4III ACNGT 2 cut(s) 322, 1029
HpyCH4IV ACGT 4 cut(s) 141, 438, 684, 1170
HpyCH4V TGCA 2 cut(s) 422, 1200
HpyF3I CTNAG 5 cut(s) 261, 516, 842, 858, 1419
HpySE526I ACGT 4 cut(s) 141, 438, 684, 1170
Hsp92I GRCGYC 1 cut(s) 1037
Hsp92II CATG 4 cut(s) 814, 828, 962, 1376
KpnI GGTACC 2 cut(s) 820, 920
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 9 cut(s) 115, 151, 234, 257, 402, 679, 928, 1054, 1223
LmnI GCTCC 4 cut(s) 209, 741, 1108, 1164
LpnPI CCDG 4 cut(s) 294, 933, 1232, 1287
Lsp1109I GCAGC 3 cut(s) 406, 1168, 1323
LweI GCATC 3 cut(s) 221, 604, 1187
MaeI CTAG 2 cut(s) 935, 1262
MaeII ACGT 4 cut(s) 141, 438, 684, 1170
MaeIII GTNAC 3 cut(s) 608, 703, 1166
MalI GATC 9 cut(s) 117, 153, 236, 259, 404, 681, 930, 1056, 1225
MboI GATC 9 cut(s) 115, 151, 234, 257, 402, 679, 928, 1054, 1223
MflI RGATCY 4 cut(s) 234, 257, 928, 1223
MluCI AATT 3 cut(s) 81, 923, 981
MlyI GAGTC 3 cut(s) 515, 1186, 1396
MmeI TCCRAC 1 cut(s) 304
MroXI GAANNNNTTC 4 cut(s) 360, 468, 564, 873
MseI TTAA 7 cut(s) 230, 297, 345, 524, 549, 620, 714
MslI CAYNNNNRTG 1 cut(s) 1377
NdeI CATATG 1 cut(s) 1135
NdeII GATC 9 cut(s) 115, 151, 234, 257, 402, 679, 928, 1054, 1223
NlaIII CATG 4 cut(s) 814, 828, 962, 1376
NlaIV GGNNCC 3 cut(s) 818, 918, 930
NmuCI GTSAC 1 cut(s) 608
NspV TTCGAA 2 cut(s) 160, 1281
PagI TCATGA 1 cut(s) 1372
PdmI GAANNNNTTC 4 cut(s) 360, 468, 564, 873
PfeI GAWTC 6 cut(s) 248, 277, 836, 848, 905, 995
PkrI GCNGC 3 cut(s) 421, 1158, 1338
PleI GAGTC 3 cut(s) 514, 1186, 1396
PpsI GAGTC 3 cut(s) 514, 1186, 1396
Ppu21I YACGTR 2 cut(s) 685, 1171
PspN4I GGNNCC 3 cut(s) 818, 918, 930
PsuI RGATCY 4 cut(s) 234, 257, 928, 1223
RsaI GTAC 5 cut(s) 137, 696, 818, 918, 1024
RsaNI GTAC 5 cut(s) 136, 695, 817, 917, 1023
RseI CAYNNNNRTG 1 cut(s) 1377
SaqAI TTAA 7 cut(s) 230, 297, 345, 524, 549, 620, 714
SatI GCNGC 3 cut(s) 420, 1157, 1337
Sau3AI GATC 9 cut(s) 115, 151, 234, 257, 402, 679, 928, 1054, 1223
SchI GAGTC 3 cut(s) 515, 1186, 1396
SfaNI GCATC 3 cut(s) 221, 604, 1187
SfuI TTCGAA 2 cut(s) 160, 1281
SmiMI CAYNNNNRTG 1 cut(s) 1377
SmlI CTYRAG 1 cut(s) 555
SmoI CTYRAG 1 cut(s) 555
SnaBI TACGTA 1 cut(s) 1171
SpeI ACTAGT 1 cut(s) 934
Sse9I AATT 3 cut(s) 81, 923, 981
SsiI CCGC 2 cut(s) 397, 791
SspMI CTAG 2 cut(s) 935, 1262
StyI CCWWGG 1 cut(s) 1391
TaaI ACNGT 2 cut(s) 322, 1029
TaiI ACGT 4 cut(s) 144, 441, 687, 1173
TaqI TCGA 7 cut(s) 72, 160, 450, 851, 908, 1195, 1281
TasI AATT 3 cut(s) 81, 923, 981
TatI WGTACW 3 cut(s) 135, 694, 1022
TfiI GAWTC 6 cut(s) 248, 277, 836, 848, 905, 995
Tru1I TTAA 7 cut(s) 230, 297, 345, 524, 549, 620, 714
Tru9I TTAA 7 cut(s) 230, 297, 345, 524, 549, 620, 714
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 1 cut(s) 608
TseI GCWGC 3 cut(s) 419, 1156, 1336
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 6 cut(s) 17, 69, 1077, 1095, 1155, 1166
TspRI CASTG 1 cut(s) 288
XbaI TCTAGA 1 cut(s) 1261
XcmI CCANNNNNNNNNTGG 1 cut(s) 963
XmnI GAANNNNTTC 4 cut(s) 360, 468, 564, 873
XspI CTAG 2 cut(s) 935, 1262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.