Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000931

Physical Location & Seq

Genomic Coordinates Reverse (-)

41296976 .. 41297534

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0266300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCCAATATACCCCTCTGTGGGAAGCAAAGACTGCTCAAGTTGTATTCAAGACGCTGCAAAAGAAATTCGGCAACGTTGTCCAGACCAAGCAGCTGCAACGATTTGAATGTGACTGACCCTGAGAAGTTTGTCAAAGAACTAGGAGCTCTGGTGGATAATATTAAAGCACAAGCTATGGAGCCAAAGAATCTAGGATTTGGGAAAGGTGAGACCAAGTTGTCACCATTGACGACACTCTATGCCTTTGGGCAATGCACAAGGGACTTGGCTAAGCTAGATTGTTCTCAGTGCTTGGCCAATGCAGTGGGATACTACGAAACCATTTGTGGCAATCGAAGGGGATGTCGAGTTCTGTATGGTAGTTGCTATGTCAGATATGAGCTCTATCCAATTTTCTACCCTGTTGGTTCCAACAGTAGTATGAATGTTGTGGCTGATGAAACTAAAATGACTCTAGTTAATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.34

Weight (kDa)

9.07

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	33 - 129	8.5e-14	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21560 AT1G21560 AT1G21560 AT1G21560 AT1G21560 AT1G21560 AT1G77270 AT1G77270 AT3G07730 AT3G07730 AT4G01170
fragaria_vesca	FvH4_2g27970 FvH4_2g27970 FvH4_2g27970 FvH4_2g27970 FvH4_2g27970 FvH4_2g27970 FvH4_2g27980 FvH4_2g27990
malus_domestica	MD08G1159900.v1.1 MD15G1133200.v1.1
prunus_persica	Prupe.1G488800_v2.0.a1 Prupe.1G488800_v2.0.a1 Prupe.3G258400_v2.0.a1 Prupe.3G258400_v2.0.a1 Prupe.3G258400_v2.0.a1
pyrus_communis	pycom08g13470 pycom15g12010
rosa_chinensis	RchiOBHm_Chr6g0296791 RchiOBHm_Chr6g0296801 RchiOBHm_Chr6g0296811
rosa_laevigata	RLG00000011656 RLG00000011657 RLG00000011658
rosa_multiflora	Rmu_co8494021.1_g000001 Rmu_sc0009816.1_g000014 Rmu_ssc0000192.1_g000013 Rmu_ssc0000192.1_g000014
rosa_roxburghii	Rroxscaffold_7G00171140 Rroxscaffold_7G00171150 Rroxscaffold_7G00171160
rosa_rugosa	Rorug03G0248200 Rorug06G0266300 Rorug06G0266400 Rorug06G0266500 Rorug06G0266600 Rorug06G0266700 Rorug06G0266800 Rorug06G0266800
rosa_samantha	Rh6AG377300 Rh6AG377400 Rh6AG377500 Rh6BG385500 Rh6BG385600 Rh6BG385700 Rh6CG390600 Rh6CG390700 Rh6CG390800 Rh6DG377800 Rh6DG377900 Rh6DG378000
rosa_wichuraiana	Rw6G032970 Rw6G032980 Rw6G032990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	220
AclI	AACGTT	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	20, 21
AgsI	TTSAA	2 cut(s)	51, 109
AloI	GAACNNNNNNTCC	2 cut(s)	336, 368
AluBI	AGCT	5 cut(s)	96, 149, 176, 277, 385
AluI	AGCT	5 cut(s)	96, 149, 176, 277, 385
Alw21I	GWGCWC	2 cut(s)	151, 387
Alw26I	GTCTC	1 cut(s)	206
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	3 cut(s)	57, 93, 96
ApoI	RAATTY	1 cut(s)	67
ArsI	GACNNNNNNTTYG	2 cut(s)	331, 363
AsuHPI	GGTGA	2 cut(s)	216, 221
BalI	TGGCCA	1 cut(s)	299
BanII	GRGCYC	2 cut(s)	151, 387
Bbv12I	GWGCWC	2 cut(s)	151, 387
BbvI	GCAGC	3 cut(s)	44, 83, 105
BciVI	GTATCC	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	4 cut(s)	143, 194, 278, 458
BfuI	GTATCC	1 cut(s)	305
BisI	GCNGC	3 cut(s)	58, 94, 97
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	3 cut(s)	59, 95, 98
BmiI	GGNNCC	2 cut(s)	183, 412
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 21
Bse3DI	GCAATG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	350
BseLI	CCNNNNNNNGG	2 cut(s)	20, 21
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	2 cut(s)	114, 302
BseXI	GCAGC	3 cut(s)	44, 83, 105
BshFI	GGCC	1 cut(s)	299
BsiHKAI	GWGCWC	2 cut(s)	151, 387
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	20, 21
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	299
Bso31I	GGTCTC	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	151, 387
Bsp1720I	GCTNAGC	1 cut(s)	273
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	2 cut(s)	115, 301
BspLI	GGNNCC	2 cut(s)	183, 412
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	419
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstDEI	CTNAG	3 cut(s)	123, 273, 288
BstF5I	GGATG	1 cut(s)	350
BstMAI	GTCTC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstV1I	GCAGC	3 cut(s)	44, 83, 105
BstXI	CCANNNNNNTGG	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	350
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	2 cut(s)	296, 312
CseI	GACGC	1 cut(s)	63
CviJI	RGCY	9 cut(s)	96, 149, 176, 184, 272, 277, 299, 385, 437
CviKI_1	RGCY	9 cut(s)	96, 149, 176, 184, 272, 277, 299, 385, 437
DdeI	CTNAG	3 cut(s)	123, 273, 288
DrdI	GACNNNNNNGTC	1 cut(s)	220
DseDI	GACNNNNNNGTC	1 cut(s)	220
EaeI	YGGCCR	1 cut(s)	297
Ecl136II	GAGCTC	2 cut(s)	149, 385
Eco24I	GRGCYC	2 cut(s)	151, 387
Eco31I	GGTCTC	1 cut(s)	206
Eco53kI	GAGCTC	2 cut(s)	149, 385
EcoICRI	GAGCTC	2 cut(s)	149, 385
EcoT38I	GRGCYC	2 cut(s)	151, 387
FaiI	YATR	8 cut(s)	11, 179, 243, 360, 372, 381, 425, 469
FaqI	GGGAC	1 cut(s)	278
Fnu4HI	GCNGC	3 cut(s)	58, 94, 97
FokI	GGATG	1 cut(s)	357
FriOI	GRGCYC	2 cut(s)	151, 387
Fsp4HI	GCNGC	3 cut(s)	58, 94, 97
FspBI	CTAG	4 cut(s)	143, 194, 278, 458
GluI	GCNGC	3 cut(s)	58, 94, 97
HaeIII	GGCC	1 cut(s)	299
HgaI	GACGC	1 cut(s)	63
HinfI	GANTC	2 cut(s)	190, 454
HphI	GGTGA	2 cut(s)	216, 221
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	2 cut(s)	51, 84
HpyAV	CCTTC	1 cut(s)	333
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	4 cut(s)	60, 99, 258, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	3 cut(s)	123, 273, 288
HpySE526I	ACGT	1 cut(s)	77
LmnI	GCTCC	2 cut(s)	146, 181
LpnPI	CCDG	4 cut(s)	97, 135, 137, 417
Lsp1109I	GCAGC	3 cut(s)	44, 83, 105
MaeI	CTAG	4 cut(s)	143, 194, 278, 458
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	2 cut(s)	112, 222
MhlI	GDGCHC	2 cut(s)	151, 387
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	2 cut(s)	67, 393
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	448
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	1 cut(s)	26
Mox20I	TGGCCA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	2 cut(s)	165, 462
Msp20I	TGGCCA	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	34
NlaIV	GGNNCC	2 cut(s)	183, 412
NmuCI	GTSAC	2 cut(s)	112, 222
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	3 cut(s)	59, 95, 98
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
Psp124BI	GAGCTC	2 cut(s)	151, 387
Psp1406I	AACGTT	1 cut(s)	77
PspN4I	GGNNCC	2 cut(s)	183, 412
PvuII	CAGCTG	1 cut(s)	96
SacI	GAGCTC	2 cut(s)	151, 387
SaqAI	TTAA	2 cut(s)	165, 462
SatI	GCNGC	3 cut(s)	58, 94, 97
SchI	GAGTC	1 cut(s)	448
SduI	GDGCHC	2 cut(s)	151, 387
SetI	ASST	7 cut(s)	80, 98, 151, 178, 211, 279, 387
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	2 cut(s)	67, 393
SspI	AATATT	1 cut(s)	163
SspMI	CTAG	4 cut(s)	143, 194, 278, 458
SstI	GAGCTC	2 cut(s)	151, 387
TaaI	ACNGT	1 cut(s)	419
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	2 cut(s)	337, 349
TasI	AATT	2 cut(s)	67, 393
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	2 cut(s)	165, 462
Tru9I	TTAA	2 cut(s)	165, 462
TscAI	CASTG	2 cut(s)	296, 312
TseFI	GTSAC	2 cut(s)	112, 222
TseI	GCWGC	3 cut(s)	57, 93, 96
Tsp45I	GTSAC	2 cut(s)	112, 222
TspDTI	ATGAA	2 cut(s)	440, 456
TspRI	CASTG	2 cut(s)	296, 312
XapI	RAATTY	1 cut(s)	67
XspI	CTAG	4 cut(s)	143, 194, 278, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.